Wall clock time and date at job start Tue Mar 31 2020 13:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35650 * 116.99899 * 2 1 4 4 C 1.39346 * 120.53707 * 359.73089 * 3 2 1 5 5 C 1.38313 * 118.43298 * 179.73105 * 4 3 2 6 6 C 1.38757 * 119.44691 * 0.55786 * 5 4 3 7 7 N 1.31378 * 121.07114 * 359.70222 * 6 5 4 8 8 C 1.32862 * 121.68926 * 359.97438 * 7 6 5 9 9 C 1.47828 * 119.77835 * 180.02562 * 8 7 6 10 10 O 1.21556 * 120.00350 * 141.87955 * 9 8 7 11 11 N 1.34776 * 120.00014 * 321.87057 * 9 8 7 12 12 C 1.47154 * 120.98506 * 3.99284 * 11 9 8 13 13 C 1.53292 * 108.38519 * 230.51178 * 12 11 9 14 14 O 1.42960 * 109.22113 * 307.69218 * 13 12 11 15 15 C 1.42961 * 114.16727 * 62.58234 * 14 13 12 16 16 H 1.08999 * 109.51133 * 57.34158 * 15 14 13 17 17 C 1.53002 * 109.51560 * 177.44559 * 15 14 13 18 18 N 1.46507 * 109.46821 * 299.99744 * 17 15 14 19 19 C 1.36935 * 120.00030 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99721 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00255 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99784 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47196 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47205 * 119.99532 * 23 21 19 26 26 H 1.48502 * 109.47022 * 239.99651 * 23 21 19 27 27 C 1.47153 * 120.98183 * 183.70444 * 11 9 8 28 28 H 1.08994 * 109.47233 * 59.99687 * 1 2 3 29 29 H 1.09002 * 109.46507 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46964 * 299.99640 * 1 2 3 31 31 H 1.07995 * 120.78307 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.27104 * 180.26034 * 5 4 3 33 33 H 1.08000 * 119.46402 * 179.72050 * 6 5 4 34 34 H 1.09002 * 109.67650 * 350.22812 * 12 11 9 35 35 H 1.08992 * 109.68328 * 110.74749 * 12 11 9 36 36 H 1.08995 * 109.51663 * 67.61687 * 13 12 11 37 37 H 1.09003 * 109.51563 * 187.76944 * 13 12 11 38 38 H 1.08997 * 109.46896 * 59.99680 * 17 15 14 39 39 H 1.08994 * 109.47200 * 180.02562 * 17 15 14 40 40 H 0.97003 * 119.99842 * 0.02562 * 18 17 15 41 41 H 0.97000 * 120.00286 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.68256 * 249.21144 * 27 11 9 43 43 H 1.08998 * 109.68248 * 9.76817 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0056 5 6 1.9696 3.5929 0.0003 6 6 3.3571 3.6012 -0.0001 7 7 4.0419 2.4801 -0.0003 8 6 3.4409 1.2951 0.0005 9 6 4.2531 0.0600 0.0009 10 8 3.8954 -0.9026 0.6513 11 7 5.3903 0.0010 -0.7201 12 6 5.8895 1.1801 -1.4454 13 6 6.1859 0.7682 -2.8919 14 8 7.0351 -0.3819 -2.8892 15 6 6.4527 -1.5380 -2.2826 16 1 5.5199 -1.7844 -2.7898 17 6 7.4219 -2.7167 -2.3939 18 7 7.6951 -2.9924 -3.8066 19 6 8.5417 -4.0109 -4.1542 20 1 9.0077 -4.6113 -3.3868 21 6 8.8011 -4.2719 -5.4927 22 7 8.2327 -3.5405 -6.4278 23 14 9.9554 -5.6618 -5.9667 24 1 10.4594 -6.3274 -4.7386 25 1 9.2248 -6.6493 -6.8011 26 1 11.1003 -5.1134 -6.7373 27 6 6.1728 -1.2427 -0.8002 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2174 2.3527 -0.0105 32 1 1.4194 4.5222 0.0004 33 1 3.8826 4.5447 -0.0001 34 1 5.1331 1.9648 -1.4349 35 1 6.8017 1.5431 -0.9722 36 1 5.2522 0.5302 -3.4013 37 1 6.6849 1.5879 -3.4089 38 1 8.3537 -2.4702 -1.8850 39 1 6.9770 -3.5978 -1.9316 40 1 7.2768 -2.4528 -4.4958 41 1 8.4136 -3.7230 -7.3631 42 1 7.1135 -1.1197 -0.2636 43 1 5.6042 -2.0630 -0.3623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755014013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:37 Heat of formation + Delta-G solvation = -39.298427 kcal Electronic energy + Delta-G solvation = -27256.373860 eV Core-core repulsion = 23303.753638 eV Total energy + Delta-G solvation = -3952.620223 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.39761 -39.81384 -38.58238 -38.04637 -34.94860 -34.28561 -32.89004 -32.03168 -31.24515 -30.04455 -28.14601 -27.79827 -26.00047 -24.43935 -23.47506 -23.16618 -22.31527 -20.85684 -19.92534 -18.46361 -17.85341 -17.41677 -17.01223 -16.57955 -16.21114 -15.99913 -15.57338 -15.26061 -14.96037 -14.81375 -14.42380 -14.36361 -14.02288 -13.90978 -13.77861 -13.13438 -13.00986 -12.90653 -12.59847 -12.35483 -12.09360 -11.94995 -11.77032 -11.44713 -10.90437 -10.81845 -10.76242 -10.45918 -10.39637 -10.25709 -10.00046 -9.79842 -9.67648 -9.49979 -8.89503 -8.80993 -8.38450 -6.82258 -5.67005 -2.95225 0.33985 0.76261 2.54278 2.68254 2.81690 3.34668 3.49719 3.54918 3.57493 3.85964 4.09627 4.13642 4.23030 4.46411 4.64680 4.66531 4.71424 4.73013 4.84684 4.94895 5.09843 5.14671 5.27350 5.33906 5.38024 5.47364 5.50361 5.65799 5.67984 5.77992 5.87892 5.94667 5.98618 6.08337 6.35097 6.44884 6.64556 6.73874 6.78438 7.27338 7.37840 7.57760 7.78277 8.08509 8.51250 9.62955 10.21012 10.57269 11.55983 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.002709 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.006434 B =10332.956901 C =10742.716992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.284 6.284 3 C 0.134 3.866 4 C -0.172 4.172 5 C -0.109 4.109 6 C 0.055 3.945 7 N -0.415 5.415 8 C 0.051 3.949 9 C 0.579 3.421 10 O -0.520 6.520 11 N -0.597 5.597 12 C 0.070 3.930 13 C 0.044 3.956 14 O -0.357 6.357 15 C 0.074 3.926 16 H 0.062 0.938 17 C 0.163 3.837 18 N -0.726 5.726 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.086 3.914 28 H 0.058 0.942 29 H 0.107 0.893 30 H 0.058 0.942 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.167 0.833 34 H 0.111 0.889 35 H 0.079 0.921 36 H 0.049 0.951 37 H 0.103 0.897 38 H 0.029 0.971 39 H 0.036 0.964 40 H 0.388 0.612 41 H 0.253 0.747 42 H 0.080 0.920 43 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.706 18.491 14.448 29.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.194 6.194 3 C 0.083 3.917 4 C -0.199 4.199 5 C -0.129 4.129 6 C -0.105 4.105 7 N -0.127 5.127 8 C -0.087 4.087 9 C 0.365 3.635 10 O -0.395 6.395 11 N -0.330 5.330 12 C -0.053 4.053 13 C -0.035 4.035 14 O -0.275 6.275 15 C 0.015 3.985 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.371 5.371 19 C -0.368 4.368 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.581 5.581 23 Si 0.739 3.261 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.036 4.036 28 H 0.077 0.923 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.165 0.835 32 H 0.161 0.839 33 H 0.185 0.815 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.067 0.933 37 H 0.121 0.879 38 H 0.047 0.953 39 H 0.054 0.946 40 H 0.222 0.778 41 H 0.063 0.937 42 H 0.099 0.901 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.615 17.576 14.745 28.327 hybrid contribution -0.995 -0.154 -0.492 1.120 sum -17.610 17.422 14.253 28.579 Atomic orbital electron populations 1.23230 0.77866 1.04970 1.01305 1.86309 1.21579 1.24880 1.86627 1.19967 0.92135 0.85835 0.93726 1.21756 1.01158 0.91739 1.05229 1.22202 0.95762 0.98432 0.96515 1.22803 0.91487 0.96494 0.99751 1.67821 1.39171 0.97270 1.08452 1.20541 0.88663 0.92959 1.06582 1.17590 0.80146 0.85977 0.79812 1.90814 1.70030 1.36518 1.42109 1.47958 1.23119 1.12950 1.48942 1.22845 1.01581 0.88172 0.92730 1.22987 0.95528 0.90051 0.94890 1.88149 1.40725 1.18886 1.79763 1.22867 0.97835 0.87193 0.90557 0.91984 1.20631 0.95083 0.91494 0.89282 1.42229 1.55647 1.38911 1.00269 1.19287 1.18881 1.07174 0.91410 0.91087 1.24740 1.00918 0.99736 0.95728 1.69690 1.47407 1.41621 0.99375 0.86106 0.80323 0.81640 0.78078 1.20555 1.21964 1.21925 1.22479 0.96258 0.86724 0.98163 0.92338 0.87422 0.92321 0.83540 0.83851 0.81549 0.87168 0.90270 0.93290 0.87891 0.95293 0.94647 0.77833 0.93678 0.90143 0.88028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.83 101.05 0.99 1.13 16 2 O -0.28 -3.40 9.21 -35.46 -0.33 -3.73 16 3 C 0.13 1.50 6.67 -38.56 -0.26 1.25 16 4 C -0.17 -1.25 9.13 -39.14 -0.36 -1.61 16 5 C -0.11 -0.63 10.10 -39.36 -0.40 -1.03 16 6 C 0.05 0.40 11.17 -17.55 -0.20 0.20 16 7 N -0.41 -4.53 7.20 -9.71 -0.07 -4.60 16 8 C 0.05 0.67 6.07 -82.88 -0.50 0.17 16 9 C 0.58 9.25 7.32 -12.34 -0.09 9.16 16 10 O -0.52 -9.74 15.53 -11.49 -0.18 -9.92 16 11 N -0.60 -9.07 3.01 -173.14 -0.52 -9.59 16 12 C 0.07 0.90 6.17 -3.53 -0.02 0.88 16 13 C 0.04 0.62 6.98 37.31 0.26 0.88 16 14 O -0.36 -6.74 10.13 -35.23 -0.36 -7.10 16 15 C 0.07 1.37 2.88 -26.36 -0.08 1.30 16 16 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 17 C 0.16 3.51 5.96 -4.04 -0.02 3.49 16 18 N -0.73 -19.57 5.50 -59.91 -0.33 -19.90 16 19 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 20 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 23 Si 0.91 23.08 29.55 -169.99 -5.02 18.05 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 27 C 0.09 1.38 5.94 -3.31 -0.02 1.36 16 28 H 0.06 0.28 7.68 -51.93 -0.40 -0.12 16 29 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.28 7.71 -51.93 -0.40 -0.12 16 31 H 0.15 0.63 6.46 -52.49 -0.34 0.29 16 32 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 33 H 0.17 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.11 1.28 4.69 -51.93 -0.24 1.04 16 35 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.39 11.10 7.54 -40.82 -0.31 10.79 16 41 H 0.25 7.62 8.31 -40.82 -0.34 7.28 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.10 1.66 7.11 -51.93 -0.37 1.29 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -37.25 356.82 -7.47 -44.72 By element: Atomic # 1 Polarization: 11.41 SS G_CDS: -5.83 Total: 5.58 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -0.94 Total: 9.58 kcal Atomic # 7 Polarization: -62.37 SS G_CDS: -0.20 Total: -62.56 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.86 Total: -20.75 kcal Atomic # 14 Polarization: 23.08 SS G_CDS: -5.02 Total: 18.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.25 -7.47 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755014013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.423 kcal (2) G-P(sol) polarization free energy of solvation -37.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds