Wall clock time and date at job start Tue Mar 31 2020 13:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35650 * 116.99899 * 2 1 4 4 C 1.39346 * 120.53707 * 359.73089 * 3 2 1 5 5 C 1.38313 * 118.43298 * 179.73105 * 4 3 2 6 6 C 1.38757 * 119.44691 * 0.55786 * 5 4 3 7 7 N 1.31378 * 121.07114 * 359.70222 * 6 5 4 8 8 C 1.32862 * 121.68926 * 359.97438 * 7 6 5 9 9 C 1.47828 * 119.77835 * 180.02562 * 8 7 6 10 10 O 1.21556 * 120.00350 * 141.87955 * 9 8 7 11 11 N 1.34776 * 120.00014 * 321.87057 * 9 8 7 12 12 C 1.47154 * 120.98506 * 3.99284 * 11 9 8 13 13 C 1.53292 * 108.38519 * 230.51178 * 12 11 9 14 14 O 1.42960 * 109.22113 * 307.69218 * 13 12 11 15 15 C 1.42961 * 114.16727 * 62.58234 * 14 13 12 16 16 H 1.08999 * 109.51133 * 57.34158 * 15 14 13 17 17 C 1.53002 * 109.51560 * 177.44559 * 15 14 13 18 18 N 1.46507 * 109.46821 * 299.99744 * 17 15 14 19 19 C 1.36935 * 120.00030 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99721 * 0.02562 * 19 18 17 21 21 C 1.38813 * 120.00255 * 180.02562 * 19 18 17 22 22 N 1.31617 * 119.99784 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00100 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47196 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47205 * 119.99532 * 23 21 19 26 26 H 1.48502 * 109.47022 * 239.99651 * 23 21 19 27 27 C 1.47153 * 120.98183 * 183.70444 * 11 9 8 28 28 H 1.08994 * 109.47233 * 59.99687 * 1 2 3 29 29 H 1.09002 * 109.46507 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46964 * 299.99640 * 1 2 3 31 31 H 1.07995 * 120.78307 * 359.97438 * 4 3 2 32 32 H 1.08001 * 120.27104 * 180.26034 * 5 4 3 33 33 H 1.08000 * 119.46402 * 179.72050 * 6 5 4 34 34 H 1.09002 * 109.67650 * 350.22812 * 12 11 9 35 35 H 1.08992 * 109.68328 * 110.74749 * 12 11 9 36 36 H 1.08995 * 109.51663 * 67.61687 * 13 12 11 37 37 H 1.09003 * 109.51563 * 187.76944 * 13 12 11 38 38 H 1.08997 * 109.46896 * 59.99680 * 17 15 14 39 39 H 1.08994 * 109.47200 * 180.02562 * 17 15 14 40 40 H 0.97003 * 119.99842 * 0.02562 * 18 17 15 41 41 H 0.97000 * 120.00286 * 180.02562 * 22 21 19 42 42 H 1.09001 * 109.68256 * 249.21144 * 27 11 9 43 43 H 1.08998 * 109.68248 * 9.76817 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 -0.0056 5 6 1.9696 3.5929 0.0003 6 6 3.3571 3.6012 -0.0001 7 7 4.0419 2.4801 -0.0003 8 6 3.4409 1.2951 0.0005 9 6 4.2531 0.0600 0.0009 10 8 3.8954 -0.9026 0.6513 11 7 5.3903 0.0010 -0.7201 12 6 5.8895 1.1801 -1.4454 13 6 6.1859 0.7682 -2.8919 14 8 7.0351 -0.3819 -2.8892 15 6 6.4527 -1.5380 -2.2826 16 1 5.5199 -1.7844 -2.7898 17 6 7.4219 -2.7167 -2.3939 18 7 7.6951 -2.9924 -3.8066 19 6 8.5417 -4.0109 -4.1542 20 1 9.0077 -4.6113 -3.3868 21 6 8.8011 -4.2719 -5.4927 22 7 8.2327 -3.5405 -6.4278 23 14 9.9554 -5.6618 -5.9667 24 1 10.4594 -6.3274 -4.7386 25 1 9.2248 -6.6493 -6.8011 26 1 11.1003 -5.1134 -6.7373 27 6 6.1728 -1.2427 -0.8002 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2174 2.3527 -0.0105 32 1 1.4194 4.5222 0.0004 33 1 3.8826 4.5447 -0.0001 34 1 5.1331 1.9648 -1.4349 35 1 6.8017 1.5431 -0.9722 36 1 5.2522 0.5302 -3.4013 37 1 6.6849 1.5879 -3.4089 38 1 8.3537 -2.4702 -1.8850 39 1 6.9770 -3.5978 -1.9316 40 1 7.2768 -2.4528 -4.4958 41 1 8.4136 -3.7230 -7.3631 42 1 7.1135 -1.1197 -0.2636 43 1 5.6042 -2.0630 -0.3623 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755014013.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:37 Heat of formation + Delta-G solvation = -66.858971 kcal Electronic energy + Delta-G solvation = -27257.568975 eV Core-core repulsion = 23303.753638 eV Total energy + Delta-G solvation = -3953.815338 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.20039 -40.92289 -39.39022 -39.22645 -36.66802 -35.77318 -34.01949 -33.38124 -32.05779 -31.69373 -29.37235 -28.44074 -27.51721 -25.57369 -24.89831 -23.86984 -23.79867 -22.36495 -20.99473 -19.26825 -19.13459 -18.74542 -18.18753 -17.71196 -17.33162 -16.94612 -16.80004 -16.43703 -16.26316 -15.97830 -15.70876 -15.33950 -15.18041 -15.03600 -14.72330 -14.66663 -14.34875 -14.22128 -13.97643 -13.47706 -13.32498 -12.96785 -12.81062 -12.64824 -12.51165 -12.40742 -12.27186 -12.02524 -11.88284 -11.66657 -11.42964 -11.22259 -10.96986 -10.84490 -10.44335 -9.73811 -9.50583 -9.01075 -7.93544 -5.23453 -0.34675 0.17416 1.47675 1.49768 1.50979 1.60036 1.69794 2.13045 2.56765 2.63695 2.73288 3.03329 3.40042 3.50402 3.55068 3.70748 3.87140 3.93481 3.98444 4.01664 4.11027 4.16625 4.25415 4.31962 4.32827 4.38513 4.47547 4.52605 4.66181 4.67044 4.70895 4.87482 4.88889 4.94722 5.00928 5.06976 5.25700 5.42739 5.48876 6.10031 6.19216 6.20964 6.27942 6.66585 6.95883 7.33677 8.06842 8.32709 9.30532 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022870 B = 0.002709 C = 0.002606 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.006434 B =10332.956901 C =10742.716992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.324 6.324 3 C 0.117 3.883 4 C -0.167 4.167 5 C -0.087 4.087 6 C 0.055 3.945 7 N -0.435 5.435 8 C 0.008 3.992 9 C 0.573 3.427 10 O -0.563 6.563 11 N -0.601 5.601 12 C 0.078 3.922 13 C 0.040 3.960 14 O -0.385 6.385 15 C 0.089 3.911 16 H 0.047 0.953 17 C 0.161 3.839 18 N -0.740 5.740 19 C -0.246 4.246 20 H 0.079 0.921 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.979 3.021 24 H -0.265 1.265 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.095 3.905 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.078 0.922 31 H 0.179 0.821 32 H 0.190 0.810 33 H 0.202 0.798 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.044 0.956 37 H 0.128 0.872 38 H 0.032 0.968 39 H 0.045 0.955 40 H 0.375 0.625 41 H 0.251 0.749 42 H 0.090 0.910 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.789 20.990 15.211 32.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.236 6.236 3 C 0.067 3.933 4 C -0.193 4.193 5 C -0.106 4.106 6 C -0.106 4.106 7 N -0.148 5.148 8 C -0.128 4.128 9 C 0.361 3.639 10 O -0.441 6.441 11 N -0.333 5.333 12 C -0.043 4.043 13 C -0.038 4.038 14 O -0.304 6.304 15 C 0.030 3.970 16 H 0.065 0.935 17 C 0.034 3.966 18 N -0.383 5.383 19 C -0.378 4.378 20 H 0.097 0.903 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.807 3.193 24 H -0.189 1.189 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.028 4.028 28 H 0.096 0.904 29 H 0.128 0.872 30 H 0.096 0.904 31 H 0.196 0.804 32 H 0.208 0.792 33 H 0.219 0.781 34 H 0.146 0.854 35 H 0.105 0.895 36 H 0.062 0.938 37 H 0.146 0.854 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.207 0.793 41 H 0.060 0.940 42 H 0.108 0.892 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -17.699 20.076 15.546 30.951 hybrid contribution -0.780 -0.752 -0.676 1.278 sum -18.479 19.323 14.869 30.593 Atomic orbital electron populations 1.23507 0.75602 1.05881 1.03157 1.86251 1.24175 1.26186 1.86941 1.20208 0.91871 0.86932 0.94281 1.22178 1.02626 0.90697 1.03793 1.22751 0.95326 0.99594 0.92958 1.23532 0.92725 0.96426 0.97940 1.67691 1.40120 0.97474 1.09487 1.20135 0.89210 0.92465 1.10956 1.18205 0.79959 0.86900 0.78833 1.90759 1.70965 1.38478 1.43864 1.48071 1.23165 1.12990 1.49114 1.22906 1.02387 0.87728 0.91317 1.23250 0.95093 0.89146 0.96269 1.88087 1.42208 1.19938 1.80126 1.22547 0.95953 0.86558 0.91962 0.93543 1.20762 0.95978 0.93225 0.86593 1.42414 1.55380 1.38414 1.02084 1.19717 1.18731 1.07483 0.91876 0.90340 1.25642 1.03011 1.02605 0.95732 1.69856 1.49164 1.43562 0.99485 0.84994 0.77898 0.78389 0.77978 1.18910 1.21891 1.21900 1.22243 0.96785 0.87533 0.96241 0.90398 0.87226 0.90357 0.80384 0.79244 0.78120 0.85351 0.89470 0.93769 0.85397 0.94959 0.93770 0.79300 0.93995 0.89230 0.88812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.15 9.83 113.37 1.11 1.26 16 2 O -0.32 -7.90 9.21 -73.58 -0.68 -8.58 16 3 C 0.12 2.55 6.67 22.93 0.15 2.71 16 4 C -0.17 -1.87 9.13 22.55 0.21 -1.66 16 5 C -0.09 -0.59 10.10 22.41 0.23 -0.37 16 6 C 0.06 0.60 11.17 84.88 0.95 1.55 16 7 N -0.44 -8.81 7.20 -184.64 -1.33 -10.14 16 8 C 0.01 0.21 6.07 41.92 0.25 0.46 16 9 C 0.57 19.10 7.32 86.78 0.64 19.73 16 10 O -0.56 -22.43 15.53 12.18 0.19 -22.24 16 11 N -0.60 -18.79 3.01 -819.97 -2.47 -21.26 16 12 C 0.08 2.00 6.17 86.35 0.53 2.53 16 13 C 0.04 1.13 6.98 72.08 0.50 1.63 16 14 O -0.38 -14.83 10.13 -148.98 -1.51 -16.34 16 15 C 0.09 3.40 2.88 30.84 0.09 3.49 16 16 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 17 C 0.16 7.12 5.96 86.38 0.51 7.64 16 18 N -0.74 -40.92 5.50 -343.44 -1.89 -42.81 16 19 C -0.25 -14.54 9.99 84.03 0.84 -13.70 16 20 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 21 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 22 N -0.97 -61.96 13.06 21.65 0.28 -61.68 16 23 Si 0.98 47.83 29.55 68.60 2.03 49.86 16 24 H -0.26 -12.12 7.11 99.48 0.71 -11.42 16 25 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 26 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 27 C 0.10 3.17 5.94 86.50 0.51 3.68 16 28 H 0.08 0.59 7.68 -2.39 -0.02 0.57 16 29 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 0.59 7.71 -2.39 -0.02 0.57 16 31 H 0.18 0.75 6.46 -2.91 -0.02 0.73 16 32 H 0.19 -0.41 8.06 -2.91 -0.02 -0.44 16 33 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.13 2.86 4.69 -2.39 -0.01 2.84 16 35 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.13 2.96 8.14 -2.39 -0.02 2.94 16 38 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.38 22.27 7.54 -92.71 -0.70 21.57 16 41 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 42 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.09 3.25 7.11 -2.39 -0.02 3.23 16 Total: -1.00 -84.62 356.82 1.96 -82.65 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.34 Total: 25.77 kcal Atomic # 6 Polarization: 17.75 SS G_CDS: 7.00 Total: 24.75 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -5.41 Total: -135.89 kcal Atomic # 8 Polarization: -45.15 SS G_CDS: -2.00 Total: -47.15 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.86 kcal Total: -84.62 1.96 -82.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755014013.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.795 kcal (2) G-P(sol) polarization free energy of solvation -84.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds