Wall clock time and date at job start Tue Mar 31 2020 13:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34769 * 120.00218 * 2 1 4 4 O 1.21506 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.48229 * 119.99999 * 179.97438 * 3 2 1 6 6 C 1.39630 * 119.65253 * 179.72097 * 5 3 2 7 7 C 1.38545 * 119.24348 * 179.77407 * 6 5 3 8 8 C 1.38576 * 118.55155 * 0.49337 * 7 6 5 9 9 C 1.39589 * 119.25029 * 359.74879 * 8 7 6 10 10 C 1.48222 * 119.65386 * 180.02562 * 9 8 7 11 11 O 1.21511 * 120.00263 * 353.50423 * 10 9 8 12 12 N 1.34781 * 120.00203 * 173.51363 * 10 9 8 13 13 C 1.46502 * 119.99979 * 183.58182 * 12 10 9 14 14 C 1.50705 * 109.46714 * 89.99792 * 13 12 10 15 15 H 1.08000 * 120.00615 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99684 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99992 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99877 * 359.97438 * 16 14 13 19 19 H 1.48490 * 109.47005 * 90.00167 * 18 16 14 20 20 H 1.48496 * 109.46740 * 210.00494 * 18 16 14 21 21 H 1.48504 * 109.47033 * 329.99966 * 18 16 14 22 22 C 1.46494 * 119.99567 * 3.57352 * 12 10 9 23 23 C 1.53002 * 109.46782 * 82.85735 * 22 12 10 24 24 O 1.42898 * 109.47517 * 64.99738 * 23 22 12 25 25 C 1.42901 * 114.00087 * 179.97438 * 24 23 22 26 26 N 1.32333 * 119.65352 * 359.97438 * 5 3 2 27 27 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46755 * 300.00134 * 1 2 3 29 29 H 1.08994 * 109.46895 * 60.00391 * 1 2 3 30 30 H 0.97005 * 119.99356 * 179.97438 * 2 1 3 31 31 H 1.08000 * 120.37495 * 0.02562 * 6 5 3 32 32 H 1.07998 * 120.71954 * 180.23023 * 7 6 5 33 33 H 1.08006 * 120.37270 * 179.77475 * 8 7 6 34 34 H 1.08995 * 109.46794 * 209.99335 * 13 12 10 35 35 H 1.08994 * 109.47252 * 329.99406 * 13 12 10 36 36 H 0.97006 * 119.99354 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47167 * 202.84823 * 22 12 10 38 38 H 1.08997 * 109.47884 * 322.85853 * 22 12 10 39 39 H 1.09000 * 109.46931 * 184.99703 * 23 22 12 40 40 H 1.08996 * 109.47032 * 304.99231 * 23 22 12 41 41 H 1.09003 * 109.46546 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47021 * 299.99858 * 25 24 23 43 43 H 1.08993 * 109.47031 * 60.00405 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2194 -0.0005 5 6 3.6213 1.1671 0.0006 6 6 4.3121 2.3805 -0.0053 7 6 5.6975 2.3705 0.0000 8 6 6.3511 1.1486 0.0006 9 6 5.5989 -0.0273 0.0012 10 6 6.2887 -1.3392 0.0025 11 8 7.4970 -1.3904 -0.1161 12 7 5.5759 -2.4753 0.1349 13 6 6.2636 -3.7664 0.2150 14 6 6.5659 -4.0859 1.6564 15 1 6.2752 -3.3961 2.4350 16 6 7.2135 -5.2590 1.9814 17 7 7.4778 -5.5376 3.2392 18 14 7.7157 -6.4525 0.6349 19 1 9.0834 -6.1190 0.1627 20 1 7.7007 -7.8375 1.1703 21 1 6.7618 -6.3497 -0.4987 22 6 4.1134 -2.4191 0.1989 23 6 3.5435 -2.3449 -1.2191 24 8 3.8451 -3.5544 -1.9177 25 6 3.3540 -3.5887 -3.2592 26 7 4.2759 0.0170 0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.9500 -0.8401 0.0004 31 1 3.7726 3.3160 -0.0099 32 1 6.2558 3.2950 -0.0006 33 1 7.4304 1.1066 0.0011 34 1 5.6254 -4.5446 -0.2035 35 1 7.1948 -3.7177 -0.3494 36 1 7.9331 -6.3631 3.4677 37 1 3.7368 -3.3134 0.6954 38 1 3.8079 -1.5360 0.7599 39 1 2.4625 -2.2138 -1.1697 40 1 3.9882 -1.5005 -1.7457 41 1 3.6243 -4.5385 -3.7208 42 1 2.2691 -3.4836 -3.2518 43 1 3.7945 -2.7702 -3.8284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001771630084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:23 Heat of formation + Delta-G solvation = -47.234359 kcal Electronic energy + Delta-G solvation = -28152.241335 eV Core-core repulsion = 24199.276985 eV Total energy + Delta-G solvation = -3952.964351 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10184 -39.53732 -38.45713 -37.58908 -35.28159 -34.86777 -33.03834 -32.44381 -31.70220 -29.85219 -27.81465 -27.44980 -26.13819 -24.70923 -24.23544 -22.71755 -22.25139 -20.92350 -19.56030 -18.20223 -17.26036 -16.92527 -16.46551 -16.35464 -16.08418 -15.78307 -15.67649 -15.42114 -15.03432 -14.92482 -14.41228 -14.27869 -14.05758 -13.70733 -13.55481 -13.15904 -12.84534 -12.59710 -12.54240 -12.34686 -12.18669 -11.96490 -11.72057 -11.54480 -11.03020 -10.97278 -10.59744 -10.43370 -10.19870 -10.11256 -9.81342 -9.54080 -9.48683 -9.45968 -9.27009 -9.10416 -8.55265 -7.74792 -6.06008 -4.04776 0.37480 0.75078 2.39785 2.84836 3.19284 3.33334 3.38787 3.43732 3.49693 3.86027 3.92473 3.99297 4.43908 4.48375 4.63327 4.76498 4.80662 4.96669 5.17307 5.22108 5.24227 5.28594 5.32435 5.35079 5.44985 5.50369 5.52514 5.55679 5.70104 5.74715 5.87262 5.94376 6.08103 6.17621 6.43304 6.82200 7.00133 7.06162 7.27229 7.33399 7.42089 7.63969 7.88451 8.15926 8.46573 8.77055 8.96855 9.54341 11.07152 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.004511 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.760249 B = 6204.941790 C = 7092.410500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.721 5.721 3 C 0.576 3.424 4 O -0.533 6.533 5 C 0.063 3.937 6 C -0.097 4.097 7 C -0.085 4.085 8 C -0.089 4.089 9 C 0.096 3.904 10 C 0.556 3.444 11 O -0.529 6.529 12 N -0.557 5.557 13 C 0.217 3.783 14 C -0.530 4.530 15 H 0.074 0.926 16 C 0.074 3.926 17 N -0.898 5.898 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.286 1.286 21 H -0.262 1.262 22 C 0.103 3.897 23 C 0.054 3.946 24 O -0.378 6.378 25 C 0.032 3.968 26 N -0.433 5.433 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.410 0.590 31 H 0.150 0.850 32 H 0.150 0.850 33 H 0.156 0.844 34 H 0.043 0.957 35 H 0.037 0.963 36 H 0.264 0.736 37 H 0.087 0.913 38 H 0.117 0.883 39 H 0.045 0.955 40 H 0.049 0.951 41 H 0.083 0.917 42 H 0.036 0.964 43 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.580 12.764 -10.238 20.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.374 5.374 3 C 0.361 3.639 4 O -0.409 6.409 5 C -0.077 4.077 6 C -0.118 4.118 7 C -0.111 4.111 8 C -0.110 4.110 9 C -0.045 4.045 10 C 0.341 3.659 11 O -0.406 6.406 12 N -0.285 5.285 13 C 0.097 3.903 14 C -0.569 4.569 15 H 0.092 0.908 16 C -0.128 4.128 17 N -0.537 5.537 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.186 1.186 22 C -0.021 4.021 23 C -0.023 4.023 24 O -0.297 6.297 25 C -0.065 4.065 26 N -0.149 5.149 27 H 0.098 0.902 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.248 0.752 31 H 0.168 0.832 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.134 0.866 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.702 12.345 -10.092 20.386 hybrid contribution 0.742 -0.141 -0.678 1.015 sum -11.960 12.204 -10.770 20.198 Atomic orbital electron populations 1.21643 0.78914 1.02805 1.02596 1.45878 1.08067 1.09200 1.74244 1.17866 0.85691 0.84031 0.76353 1.90778 1.68842 1.31227 1.50024 1.21195 0.94163 0.90012 1.02318 1.22226 0.94731 0.99184 0.95663 1.21663 0.93913 0.98654 0.96833 1.22401 1.02946 0.91518 0.94124 1.21644 0.88674 0.95631 0.98526 1.17719 0.86521 0.82708 0.78966 1.90770 1.13017 1.86063 1.50750 1.47688 1.06039 1.07292 1.67512 1.19799 0.93229 0.79154 0.98111 1.21333 1.38546 1.05806 0.91176 0.90781 1.24815 0.95001 0.97640 0.95351 1.69900 1.41703 1.25253 1.16812 0.86876 0.79936 0.80475 0.82696 1.19966 1.21148 1.18606 1.22117 0.80923 1.04667 0.94381 1.23051 0.97603 0.87046 0.94647 1.88040 1.78701 1.37996 1.24952 1.22696 0.97539 1.02027 0.84240 1.68066 1.09724 1.27294 1.09821 0.90175 0.91740 0.91891 0.75185 0.83194 0.83276 0.82644 0.93861 0.94542 0.92597 0.89469 0.86565 0.93730 0.93246 0.89859 0.94530 0.94632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.65 10.70 59.85 0.64 1.29 16 2 N -0.72 -7.46 5.70 -67.92 -0.39 -7.84 16 3 C 0.58 7.20 7.81 -12.16 -0.09 7.11 16 4 O -0.53 -7.70 16.32 5.36 0.09 -7.62 16 5 C 0.06 0.79 6.75 -83.03 -0.56 0.22 16 6 C -0.10 -1.03 9.63 -38.95 -0.38 -1.41 16 7 C -0.08 -0.83 10.16 -39.34 -0.40 -1.23 16 8 C -0.09 -1.15 9.63 -38.95 -0.38 -1.53 16 9 C 0.10 1.52 6.50 -83.03 -0.54 0.98 16 10 C 0.56 11.42 7.59 -12.16 -0.09 11.32 16 11 O -0.53 -12.57 15.90 5.36 0.09 -12.49 16 12 N -0.56 -11.66 2.42 -176.04 -0.43 -12.09 16 13 C 0.22 5.38 4.22 -5.19 -0.02 5.36 16 14 C -0.53 -15.19 9.94 -34.44 -0.34 -15.53 16 15 H 0.07 2.31 8.06 -52.49 -0.42 1.89 16 16 C 0.07 2.16 5.47 -17.82 -0.10 2.07 16 17 N -0.90 -27.64 13.96 55.43 0.77 -26.87 16 18 Si 0.87 21.70 27.47 -169.99 -4.67 17.03 16 19 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.26 -6.20 6.54 56.52 0.37 -5.84 16 22 C 0.10 1.71 5.10 -4.04 -0.02 1.68 16 23 C 0.05 0.76 4.84 37.16 0.18 0.94 16 24 O -0.38 -6.04 10.41 -35.23 -0.37 -6.41 16 25 C 0.03 0.37 11.01 101.05 1.11 1.49 16 26 N -0.43 -6.01 3.74 -6.38 -0.02 -6.03 16 27 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.41 4.13 4.66 -40.82 -0.19 3.94 16 31 H 0.15 1.37 7.64 -52.49 -0.40 0.97 16 32 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.16 1.95 7.65 -52.48 -0.40 1.55 16 34 H 0.04 1.06 6.88 -51.93 -0.36 0.70 16 35 H 0.04 0.96 6.80 -51.93 -0.35 0.61 16 36 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 37 H 0.09 1.49 8.02 -51.93 -0.42 1.07 16 38 H 0.12 1.75 4.47 -52.81 -0.24 1.52 16 39 H 0.04 0.49 6.64 -51.93 -0.35 0.14 16 40 H 0.05 0.71 6.97 -51.93 -0.36 0.35 16 41 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 359.05 15.07 5.41 5.41 Total: -1.00 -35.81 359.05 -6.11 -41.93 By element: Atomic # 1 Polarization: 7.83 SS G_CDS: -5.61 Total: 2.22 kcal Atomic # 6 Polarization: 13.75 SS G_CDS: -0.99 Total: 12.77 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.06 Total: -52.84 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.19 Total: -26.51 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.81 -6.11 -41.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771630084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.309 kcal (2) G-P(sol) polarization free energy of solvation -35.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds