Wall clock time and date at job start Tue Mar 31 2020 13:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34769 * 120.00218 * 2 1 4 4 O 1.21506 * 119.99742 * 359.97438 * 3 2 1 5 5 C 1.48229 * 119.99999 * 179.97438 * 3 2 1 6 6 C 1.39630 * 119.65253 * 179.72097 * 5 3 2 7 7 C 1.38545 * 119.24348 * 179.77407 * 6 5 3 8 8 C 1.38576 * 118.55155 * 0.49337 * 7 6 5 9 9 C 1.39589 * 119.25029 * 359.74879 * 8 7 6 10 10 C 1.48222 * 119.65386 * 180.02562 * 9 8 7 11 11 O 1.21511 * 120.00263 * 353.50423 * 10 9 8 12 12 N 1.34781 * 120.00203 * 173.51363 * 10 9 8 13 13 C 1.46502 * 119.99979 * 183.58182 * 12 10 9 14 14 C 1.50705 * 109.46714 * 89.99792 * 13 12 10 15 15 H 1.08000 * 120.00615 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99684 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99992 * 179.97438 * 16 14 13 18 18 Si 1.86809 * 119.99877 * 359.97438 * 16 14 13 19 19 H 1.48490 * 109.47005 * 90.00167 * 18 16 14 20 20 H 1.48496 * 109.46740 * 210.00494 * 18 16 14 21 21 H 1.48504 * 109.47033 * 329.99966 * 18 16 14 22 22 C 1.46494 * 119.99567 * 3.57352 * 12 10 9 23 23 C 1.53002 * 109.46782 * 82.85735 * 22 12 10 24 24 O 1.42898 * 109.47517 * 64.99738 * 23 22 12 25 25 C 1.42901 * 114.00087 * 179.97438 * 24 23 22 26 26 N 1.32333 * 119.65352 * 359.97438 * 5 3 2 27 27 H 1.09001 * 109.47044 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46755 * 300.00134 * 1 2 3 29 29 H 1.08994 * 109.46895 * 60.00391 * 1 2 3 30 30 H 0.97005 * 119.99356 * 179.97438 * 2 1 3 31 31 H 1.08000 * 120.37495 * 0.02562 * 6 5 3 32 32 H 1.07998 * 120.71954 * 180.23023 * 7 6 5 33 33 H 1.08006 * 120.37270 * 179.77475 * 8 7 6 34 34 H 1.08995 * 109.46794 * 209.99335 * 13 12 10 35 35 H 1.08994 * 109.47252 * 329.99406 * 13 12 10 36 36 H 0.97006 * 119.99354 * 179.97438 * 17 16 14 37 37 H 1.09001 * 109.47167 * 202.84823 * 22 12 10 38 38 H 1.08997 * 109.47884 * 322.85853 * 22 12 10 39 39 H 1.09000 * 109.46931 * 184.99703 * 23 22 12 40 40 H 1.08996 * 109.47032 * 304.99231 * 23 22 12 41 41 H 1.09003 * 109.46546 * 179.97438 * 25 24 23 42 42 H 1.09000 * 109.47021 * 299.99858 * 25 24 23 43 43 H 1.08993 * 109.47031 * 60.00405 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5314 2.2194 -0.0005 5 6 3.6213 1.1671 0.0006 6 6 4.3121 2.3805 -0.0053 7 6 5.6975 2.3705 0.0000 8 6 6.3511 1.1486 0.0006 9 6 5.5989 -0.0273 0.0012 10 6 6.2887 -1.3392 0.0025 11 8 7.4970 -1.3904 -0.1161 12 7 5.5759 -2.4753 0.1349 13 6 6.2636 -3.7664 0.2150 14 6 6.5659 -4.0859 1.6564 15 1 6.2752 -3.3961 2.4350 16 6 7.2135 -5.2590 1.9814 17 7 7.4778 -5.5376 3.2392 18 14 7.7157 -6.4525 0.6349 19 1 9.0834 -6.1190 0.1627 20 1 7.7007 -7.8375 1.1703 21 1 6.7618 -6.3497 -0.4987 22 6 4.1134 -2.4191 0.1989 23 6 3.5435 -2.3449 -1.2191 24 8 3.8451 -3.5544 -1.9177 25 6 3.3540 -3.5887 -3.2592 26 7 4.2759 0.0170 0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.9500 -0.8401 0.0004 31 1 3.7726 3.3160 -0.0099 32 1 6.2558 3.2950 -0.0006 33 1 7.4304 1.1066 0.0011 34 1 5.6254 -4.5446 -0.2035 35 1 7.1948 -3.7177 -0.3494 36 1 7.9331 -6.3631 3.4677 37 1 3.7368 -3.3134 0.6954 38 1 3.8079 -1.5360 0.7599 39 1 2.4625 -2.2138 -1.1697 40 1 3.9882 -1.5005 -1.7457 41 1 3.6243 -4.5385 -3.7208 42 1 2.2691 -3.4836 -3.2518 43 1 3.7945 -2.7702 -3.8284 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771630084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:31:22 Heat of formation + Delta-G solvation = -74.190978 kcal Electronic energy + Delta-G solvation = -28153.410262 eV Core-core repulsion = 24199.276985 eV Total energy + Delta-G solvation = -3954.133277 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.19711 -40.73773 -39.65775 -38.81269 -36.78272 -35.83328 -34.83613 -33.75777 -32.85674 -31.34649 -29.54191 -28.21455 -27.16269 -26.10673 -25.17741 -24.15047 -23.76316 -21.90562 -20.90301 -19.27376 -19.11947 -18.57373 -17.59696 -17.42169 -17.12484 -16.97270 -16.79523 -16.52699 -16.33154 -16.20409 -15.89776 -15.51839 -15.28839 -14.92591 -14.66260 -14.57743 -14.28900 -13.84998 -13.76074 -13.44128 -13.25741 -13.14360 -13.06445 -12.93723 -12.74134 -12.46821 -12.10114 -11.98869 -11.76334 -11.67810 -11.15088 -11.10235 -10.81288 -10.59388 -10.47713 -10.39104 -10.17237 -9.44867 -8.32941 -6.37732 -0.62896 -0.24170 1.34803 1.37283 1.37945 1.48163 1.90119 1.98448 2.09424 2.32876 2.73950 2.75002 2.94697 3.02138 3.39299 3.74721 3.78525 3.89531 4.15836 4.16664 4.28005 4.34008 4.38264 4.48320 4.52744 4.55494 4.64514 4.65860 4.82785 4.84856 4.92219 4.93236 4.96453 4.99862 5.03746 5.27431 5.39030 5.45244 5.58372 6.09890 6.23438 6.27820 6.42774 6.59677 6.62728 6.98040 7.12965 7.29178 8.83691 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013294 B = 0.004511 C = 0.003947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.760249 B = 6204.941790 C = 7092.410500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.715 5.715 3 C 0.574 3.426 4 O -0.555 6.555 5 C 0.053 3.947 6 C -0.084 4.084 7 C -0.061 4.061 8 C -0.091 4.091 9 C 0.070 3.930 10 C 0.549 3.451 11 O -0.576 6.576 12 N -0.568 5.568 13 C 0.232 3.768 14 C -0.536 4.536 15 H 0.031 0.969 16 C 0.017 3.983 17 N -0.943 5.943 18 Si 0.943 3.057 19 H -0.273 1.273 20 H -0.273 1.273 21 H -0.243 1.243 22 C 0.101 3.899 23 C 0.064 3.936 24 O -0.414 6.414 25 C 0.026 3.974 26 N -0.434 5.434 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.411 0.589 31 H 0.173 0.827 32 H 0.195 0.805 33 H 0.154 0.846 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.269 0.731 37 H 0.075 0.925 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.061 0.939 43 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.249 14.034 -12.070 23.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.367 5.367 3 C 0.359 3.641 4 O -0.433 6.433 5 C -0.087 4.087 6 C -0.105 4.105 7 C -0.086 4.086 8 C -0.112 4.112 9 C -0.069 4.069 10 C 0.336 3.664 11 O -0.456 6.456 12 N -0.296 5.296 13 C 0.110 3.890 14 C -0.575 4.575 15 H 0.049 0.951 16 C -0.181 4.181 17 N -0.583 5.583 18 Si 0.766 3.234 19 H -0.199 1.199 20 H -0.198 1.198 21 H -0.166 1.166 22 C -0.022 4.022 23 C -0.013 4.013 24 O -0.333 6.333 25 C -0.070 4.070 26 N -0.149 5.149 27 H 0.126 0.874 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.249 0.751 31 H 0.191 0.809 32 H 0.212 0.788 33 H 0.172 0.828 34 H 0.068 0.932 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.148 0.852 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.080 0.920 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.429 13.612 -11.935 23.150 hybrid contribution 1.169 -0.406 -0.048 1.238 sum -13.260 13.207 -11.983 22.222 Atomic orbital electron populations 1.21874 0.77261 1.04758 1.02623 1.45960 1.09213 1.08590 1.72956 1.17881 0.85596 0.84299 0.76327 1.90768 1.69099 1.31936 1.51491 1.21413 0.94413 0.90296 1.02622 1.22581 0.95153 0.99314 0.93428 1.22077 0.93630 0.98830 0.94103 1.22512 1.02975 0.91805 0.93937 1.20969 0.89603 0.93890 1.02462 1.18410 0.86286 0.84178 0.77533 1.90716 1.15022 1.87103 1.52775 1.47736 1.07827 1.06282 1.67740 1.19354 0.93022 0.81568 0.95049 1.21522 1.38469 1.05156 0.92314 0.95056 1.25745 0.94824 0.99668 0.97877 1.70039 1.42827 1.26249 1.19149 0.85780 0.79682 0.78063 0.79905 1.19894 1.19846 1.16615 1.22360 0.78422 1.04751 0.96677 1.22931 0.99325 0.86469 0.92567 1.87978 1.79704 1.38689 1.26972 1.22891 0.99106 1.02627 0.82348 1.67795 1.08819 1.28378 1.09950 0.87361 0.91987 0.91566 0.75104 0.80942 0.78784 0.82802 0.93172 0.96319 0.92218 0.90638 0.85224 0.90154 0.93567 0.89226 0.92004 0.94245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.01 10.70 127.77 1.37 2.38 16 2 N -0.72 -13.22 5.70 -487.09 -2.78 -15.99 16 3 C 0.57 13.15 7.81 86.90 0.68 13.83 16 4 O -0.55 -14.84 16.32 -3.73 -0.06 -14.90 16 5 C 0.05 1.22 6.75 42.06 0.28 1.50 16 6 C -0.08 -1.51 9.63 22.68 0.22 -1.29 16 7 C -0.06 -0.98 10.16 22.42 0.23 -0.76 16 8 C -0.09 -2.26 9.63 22.68 0.22 -2.04 16 9 C 0.07 2.22 6.50 42.05 0.27 2.49 16 10 C 0.55 23.38 7.59 86.90 0.66 24.04 16 11 O -0.58 -28.73 15.90 -3.75 -0.06 -28.79 16 12 N -0.57 -24.59 2.42 -829.15 -2.01 -26.59 16 13 C 0.23 11.84 4.22 85.63 0.36 12.21 16 14 C -0.54 -32.11 9.94 25.60 0.25 -31.86 16 15 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 16 C 0.02 1.03 5.47 84.66 0.46 1.49 16 17 N -0.94 -59.87 13.96 21.45 0.30 -59.57 16 18 Si 0.94 45.42 27.47 68.60 1.88 47.30 16 19 H -0.27 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 21 H -0.24 -10.86 6.54 99.48 0.65 -10.21 16 22 C 0.10 3.34 5.10 86.38 0.44 3.78 16 23 C 0.06 1.72 4.84 71.98 0.35 2.07 16 24 O -0.41 -12.74 10.41 -148.98 -1.55 -14.29 16 25 C 0.03 0.56 11.01 113.37 1.25 1.81 16 26 N -0.43 -11.61 3.74 -174.09 -0.65 -12.26 16 27 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.41 7.39 4.66 -92.70 -0.43 6.96 16 31 H 0.17 2.41 7.64 -2.91 -0.02 2.39 16 32 H 0.20 1.40 8.06 -2.91 -0.02 1.38 16 33 H 0.15 3.82 7.65 -2.91 -0.02 3.80 16 34 H 0.05 2.48 6.88 -2.39 -0.02 2.46 16 35 H 0.02 1.02 6.80 -2.39 -0.02 1.00 16 36 H 0.27 15.84 8.31 -92.70 -0.77 15.07 16 37 H 0.08 2.64 8.02 -2.39 -0.02 2.62 16 38 H 0.13 3.91 4.47 -4.13 -0.02 3.89 16 39 H 0.08 1.54 6.64 -2.39 -0.02 1.53 16 40 H 0.05 1.28 6.97 -2.39 -0.02 1.26 16 41 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 Total: -1.00 -82.17 359.05 2.67 -79.50 By element: Atomic # 1 Polarization: 15.37 SS G_CDS: 0.55 Total: 15.93 kcal Atomic # 6 Polarization: 22.61 SS G_CDS: 7.04 Total: 29.66 kcal Atomic # 7 Polarization: -109.28 SS G_CDS: -5.14 Total: -114.41 kcal Atomic # 8 Polarization: -56.30 SS G_CDS: -1.67 Total: -57.97 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.88 Total: 47.30 kcal Total: -82.17 2.67 -79.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771630084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.309 kcal (2) G-P(sol) polarization free energy of solvation -82.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds