Wall clock time and date at job start Tue Mar 31 2020 13:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46501 * 2 1 4 4 H 1.09003 * 109.62805 * 304.99920 * 3 2 1 5 5 C 1.53248 * 109.62646 * 184.60708 * 3 2 1 6 6 N 1.46472 * 109.85800 * 178.09451 * 5 3 2 7 7 C 1.46894 * 110.99967 * 197.76438 * 6 5 3 8 8 C 1.50694 * 109.47263 * 189.99486 * 7 6 5 9 9 C 1.38641 * 119.75578 * 269.72657 * 8 7 6 10 10 C 1.37613 * 120.24796 * 179.76223 * 9 8 7 11 11 C 1.40714 * 119.74774 * 0.48509 * 10 9 8 12 12 C 1.41397 * 120.24610 * 179.78798 * 11 10 9 13 13 H 1.07999 * 120.00069 * 150.22228 * 12 11 10 14 14 C 1.39952 * 119.99777 * 330.22335 * 12 11 10 15 15 N 1.30823 * 119.99604 * 161.72146 * 14 12 11 16 16 Si 1.86802 * 120.00128 * 341.72201 * 14 12 11 17 17 H 1.48501 * 109.46768 * 95.41234 * 16 14 12 18 18 H 1.48498 * 109.47106 * 215.40945 * 16 14 12 19 19 H 1.48495 * 109.47279 * 335.41462 * 16 14 12 20 20 C 1.40717 * 119.51278 * 359.77571 * 11 10 9 21 21 C 1.37620 * 119.74012 * 359.97438 * 20 11 10 22 22 C 1.46463 * 112.55988 * 72.65709 * 6 5 3 23 23 C 1.53255 * 109.85718 * 287.34203 * 22 6 5 24 24 H 1.08998 * 109.63008 * 302.29951 * 23 22 6 25 25 C 1.52999 * 109.63013 * 181.70917 * 23 22 6 26 26 S 1.81892 * 109.79482 * 65.49650 * 3 2 1 27 27 O 1.42110 * 109.46847 * 286.94461 * 26 3 2 28 28 H 1.08998 * 109.47607 * 299.99826 * 1 2 3 29 29 H 1.08996 * 109.47250 * 60.00468 * 1 2 3 30 30 H 1.09006 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47189 * 239.99884 * 2 1 3 32 32 H 1.08996 * 109.47250 * 119.99531 * 2 1 3 33 33 H 1.09004 * 109.40494 * 298.20901 * 5 3 2 34 34 H 1.09002 * 109.40806 * 57.97610 * 5 3 2 35 35 H 1.09002 * 109.47554 * 310.00085 * 7 6 5 36 36 H 1.09004 * 109.46957 * 70.00030 * 7 6 5 37 37 H 1.08003 * 119.86805 * 359.97438 * 9 8 7 38 38 H 1.08000 * 120.12615 * 180.27747 * 10 9 8 39 39 H 0.97003 * 119.99644 * 179.97438 * 15 14 12 40 40 H 1.08000 * 120.12955 * 180.02562 * 20 11 10 41 41 H 1.08006 * 119.87075 * 180.02562 * 21 20 11 42 42 H 1.08995 * 109.40756 * 47.45991 * 22 6 5 43 43 H 1.08999 * 109.40441 * 167.30701 * 22 6 5 44 44 H 1.09003 * 109.47061 * 60.00163 * 25 23 22 45 45 H 1.09002 * 109.47317 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47325 * 299.99871 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6067 1.9841 -0.8410 5 6 3.5680 1.4485 -0.1159 6 7 4.0581 2.8280 -0.1621 7 6 5.4294 2.8821 -0.6861 8 6 5.9870 4.2686 -0.4920 9 6 5.8214 5.2220 -1.4848 10 6 6.3222 6.4927 -1.3161 11 6 7.0133 6.8196 -0.1347 12 6 7.5361 8.1207 0.0477 13 1 7.6230 8.5332 1.0420 14 6 7.9409 8.8738 -1.0602 15 7 8.0823 10.1700 -0.9536 16 14 8.2791 8.0283 -2.6913 17 1 7.0661 8.0966 -3.5451 18 1 9.4064 8.7093 -3.3774 19 1 8.6337 6.6070 -2.4479 20 6 7.1800 5.8424 0.8639 21 6 6.6663 4.5796 0.6759 22 6 3.9651 3.5011 1.1354 23 6 2.5004 3.8229 1.4511 24 1 2.0824 4.4424 0.6577 25 6 2.4132 4.5635 2.7870 26 16 1.5759 2.2599 1.5573 27 8 0.1813 2.5332 1.5516 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.9986 0.9398 0.7466 34 1 3.8641 0.9282 -1.0269 35 1 6.0508 2.1626 -0.1529 36 1 5.4222 2.6390 -1.7486 37 1 5.2945 4.9674 -2.3925 38 1 6.1882 7.2351 -2.0889 39 1 8.3633 10.6920 -1.7214 40 1 7.7084 6.0826 1.7747 41 1 6.7927 3.8280 1.4411 42 1 4.3681 2.8498 1.9109 43 1 4.5397 4.4268 1.1051 44 1 2.9825 5.4910 2.7261 45 1 1.3706 4.7914 3.0088 46 1 2.8244 3.9360 3.5778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352888708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:49 Heat of formation + Delta-G solvation = -23.641844 kcal Electronic energy + Delta-G solvation = -25341.998885 eV Core-core repulsion = 21936.350797 eV Total energy + Delta-G solvation = -3405.648088 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.150 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.01967 -37.34471 -35.75282 -35.12167 -33.86052 -33.00111 -31.09503 -29.80993 -28.88098 -27.09507 -25.66570 -23.40450 -22.65737 -21.53289 -21.36921 -20.97486 -19.80742 -17.55178 -17.45847 -16.20839 -16.06119 -15.82703 -15.40757 -14.72519 -14.68848 -14.25798 -14.02230 -13.86469 -13.80708 -13.46168 -13.15634 -12.91283 -12.47889 -12.46484 -12.39782 -12.32792 -11.98960 -11.95584 -11.68803 -11.65686 -11.46523 -11.19803 -11.13383 -11.05175 -10.83466 -10.70070 -10.52587 -10.27310 -9.84413 -9.61271 -9.46856 -9.17634 -8.23380 -8.15915 -7.77139 -7.53782 -7.01313 -4.54429 1.55675 2.45712 2.53886 2.63111 3.07133 3.17480 3.27203 3.77217 3.91198 3.93992 4.46580 4.60953 4.76367 4.90552 4.94809 5.10275 5.14055 5.24597 5.29922 5.37725 5.48611 5.55629 5.57664 5.64419 5.69989 5.70971 5.78036 5.80994 5.97263 6.00204 6.04241 6.12850 6.13299 6.14292 6.16875 6.32142 6.51145 6.78545 6.82598 7.09482 7.20102 7.26413 7.37231 7.53747 7.73450 7.82866 8.05695 8.29572 8.59131 8.74167 10.00884 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.003244 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.258574 B = 8628.264604 C = 9136.396979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.093 4.093 3 C -0.395 4.395 4 H 0.098 0.902 5 C 0.083 3.917 6 N -0.555 5.555 7 C 0.126 3.874 8 C -0.223 4.223 9 C -0.053 4.053 10 C -0.241 4.241 11 C 0.096 3.904 12 C -0.446 4.446 13 H 0.090 0.910 14 C 0.084 3.916 15 N -0.806 5.806 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.291 1.291 19 H -0.244 1.244 20 C -0.210 4.210 21 C -0.074 4.074 22 C 0.073 3.927 23 C -0.390 4.390 24 H 0.097 0.903 25 C -0.126 4.126 26 S 1.217 4.783 27 O -0.854 6.854 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.046 0.954 34 H 0.079 0.921 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.092 0.908 38 H 0.099 0.901 39 H 0.286 0.714 40 H 0.100 0.900 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.113 0.887 44 H 0.073 0.927 45 H 0.057 0.943 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.753 -18.199 4.131 19.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.132 4.132 3 C -0.513 4.513 4 H 0.116 0.884 5 C -0.046 4.046 6 N -0.280 5.280 7 C 0.000 4.000 8 C -0.225 4.225 9 C -0.071 4.071 10 C -0.260 4.260 11 C 0.093 3.907 12 C -0.474 4.474 13 H 0.108 0.892 14 C -0.136 4.136 15 N -0.430 5.430 16 Si 0.740 3.260 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.167 1.167 20 C -0.229 4.229 21 C -0.093 4.093 22 C -0.056 4.056 23 C -0.510 4.510 24 H 0.116 0.884 25 C -0.185 4.185 26 S 1.417 4.583 27 O -0.849 6.849 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.096 0.904 40 H 0.118 0.882 41 H 0.110 0.890 42 H 0.060 0.940 43 H 0.131 0.869 44 H 0.092 0.908 45 H 0.076 0.924 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.611 -17.996 4.476 20.045 hybrid contribution 0.015 0.852 -2.273 2.427 sum -7.596 -17.144 2.203 18.880 Atomic orbital electron populations 1.22030 0.95480 1.01935 1.03448 1.21143 0.95888 0.93146 1.02980 1.27426 1.01897 1.04483 1.17526 0.88361 1.21694 0.91115 0.89852 1.01909 1.61226 1.24427 1.15412 1.26911 1.20692 0.85508 0.94870 0.98929 1.18869 1.10829 0.95114 0.97659 1.20429 0.96922 0.93024 0.96769 1.21026 1.07557 0.96748 1.00713 1.17745 0.89329 0.92586 0.91048 1.19536 1.35558 0.96544 0.95797 0.89170 1.26186 0.92112 0.94248 1.01014 1.69700 1.33365 1.06498 1.33449 0.86281 0.77829 0.81590 0.80323 1.19702 1.21891 1.16702 1.20985 1.07549 0.93184 1.01212 1.20496 0.97241 0.96029 0.95537 1.22012 0.93075 1.01886 0.88605 1.27294 1.05774 1.14536 1.03353 0.88400 1.21412 1.02274 1.01066 0.93778 1.70260 0.89844 0.96392 1.01759 1.93078 1.26486 1.83427 1.81911 0.91096 0.92758 0.92308 0.91023 0.90989 0.93564 0.90264 0.95039 0.91345 0.88948 0.88370 0.90396 0.88204 0.88977 0.94026 0.86881 0.90794 0.92390 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.71 9.62 37.16 0.36 -1.36 16 2 C -0.09 -0.79 5.42 -26.73 -0.14 -0.93 16 3 C -0.39 -4.19 2.74 -26.60 -0.07 -4.26 16 4 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 5 C 0.08 0.85 4.68 -3.93 -0.02 0.83 16 6 N -0.56 -7.47 4.55 -236.48 -1.08 -8.55 16 7 C 0.13 1.83 5.34 -4.98 -0.03 1.81 16 8 C -0.22 -4.10 4.14 -104.33 -0.43 -4.54 16 9 C -0.05 -1.09 9.67 -39.66 -0.38 -1.47 16 10 C -0.24 -5.65 7.18 -38.88 -0.28 -5.93 16 11 C 0.10 2.34 5.10 -106.82 -0.55 1.79 16 12 C -0.45 -11.77 9.57 -37.74 -0.36 -12.13 16 13 H 0.09 2.49 8.06 -52.49 -0.42 2.06 16 14 C 0.08 2.16 5.40 -17.34 -0.09 2.07 16 15 N -0.81 -21.25 13.93 55.55 0.77 -20.48 16 16 Si 0.91 20.58 24.52 -169.99 -4.17 16.41 16 17 H -0.27 -5.99 6.71 56.52 0.38 -5.61 16 18 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 19 H -0.24 -5.59 6.86 56.52 0.39 -5.20 16 20 C -0.21 -4.54 9.80 -38.87 -0.38 -4.92 16 21 C -0.07 -1.38 7.55 -39.66 -0.30 -1.68 16 22 C 0.07 0.96 4.13 -3.93 -0.02 0.94 16 23 C -0.39 -5.05 3.32 -26.60 -0.09 -5.14 16 24 H 0.10 1.54 8.14 -51.93 -0.42 1.11 16 25 C -0.13 -1.46 9.23 37.16 0.34 -1.12 16 26 S 1.22 13.63 12.13 -107.50 -1.30 12.33 16 27 O -0.85 -14.07 16.20 -35.23 -0.57 -14.64 16 28 H 0.07 0.84 5.86 -51.93 -0.30 0.53 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.37 7.92 -51.93 -0.41 -0.04 16 34 H 0.08 0.77 7.96 -51.93 -0.41 0.36 16 35 H 0.03 0.41 8.02 -51.93 -0.42 0.00 16 36 H 0.07 0.98 8.08 -51.93 -0.42 0.56 16 37 H 0.09 1.77 8.06 -52.48 -0.42 1.35 16 38 H 0.10 2.35 4.73 -52.49 -0.25 2.10 16 39 H 0.29 6.82 8.30 -40.82 -0.34 6.48 16 40 H 0.10 2.05 8.06 -52.49 -0.42 1.63 16 41 H 0.09 1.45 8.06 -52.48 -0.42 1.03 16 42 H 0.04 0.44 7.91 -51.93 -0.41 0.03 16 43 H 0.11 1.84 4.77 -51.93 -0.25 1.59 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 363.94 15.07 5.48 5.48 Total: -1.00 -30.47 363.94 -10.84 -41.31 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -7.54 Total: 4.16 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: -2.44 Total: -36.03 kcal Atomic # 7 Polarization: -28.72 SS G_CDS: -0.30 Total: -29.02 kcal Atomic # 8 Polarization: -14.07 SS G_CDS: -0.57 Total: -14.64 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.17 Total: 16.41 kcal Atomic # 16 Polarization: 13.63 SS G_CDS: -1.30 Total: 12.33 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.47 -10.84 -41.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352888708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.671 kcal (2) G-P(sol) polarization free energy of solvation -30.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds