Wall clock time and date at job start Tue Mar 31 2020 13:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46501 * 2 1 4 4 H 1.09003 * 109.62805 * 304.99920 * 3 2 1 5 5 C 1.53248 * 109.62646 * 184.60708 * 3 2 1 6 6 N 1.46472 * 109.85800 * 178.09451 * 5 3 2 7 7 C 1.46894 * 110.99967 * 197.76438 * 6 5 3 8 8 C 1.50694 * 109.47263 * 189.99486 * 7 6 5 9 9 C 1.38641 * 119.75578 * 269.72657 * 8 7 6 10 10 C 1.37613 * 120.24796 * 179.76223 * 9 8 7 11 11 C 1.40714 * 119.74774 * 0.48509 * 10 9 8 12 12 C 1.41397 * 120.24610 * 179.78798 * 11 10 9 13 13 H 1.07999 * 120.00069 * 150.22228 * 12 11 10 14 14 C 1.39952 * 119.99777 * 330.22335 * 12 11 10 15 15 N 1.30823 * 119.99604 * 161.72146 * 14 12 11 16 16 Si 1.86802 * 120.00128 * 341.72201 * 14 12 11 17 17 H 1.48501 * 109.46768 * 95.41234 * 16 14 12 18 18 H 1.48498 * 109.47106 * 215.40945 * 16 14 12 19 19 H 1.48495 * 109.47279 * 335.41462 * 16 14 12 20 20 C 1.40717 * 119.51278 * 359.77571 * 11 10 9 21 21 C 1.37620 * 119.74012 * 359.97438 * 20 11 10 22 22 C 1.46463 * 112.55988 * 72.65709 * 6 5 3 23 23 C 1.53255 * 109.85718 * 287.34203 * 22 6 5 24 24 H 1.08998 * 109.63008 * 302.29951 * 23 22 6 25 25 C 1.52999 * 109.63013 * 181.70917 * 23 22 6 26 26 S 1.81892 * 109.79482 * 65.49650 * 3 2 1 27 27 O 1.42110 * 109.46847 * 286.94461 * 26 3 2 28 28 H 1.08998 * 109.47607 * 299.99826 * 1 2 3 29 29 H 1.08996 * 109.47250 * 60.00468 * 1 2 3 30 30 H 1.09006 * 109.46956 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47189 * 239.99884 * 2 1 3 32 32 H 1.08996 * 109.47250 * 119.99531 * 2 1 3 33 33 H 1.09004 * 109.40494 * 298.20901 * 5 3 2 34 34 H 1.09002 * 109.40806 * 57.97610 * 5 3 2 35 35 H 1.09002 * 109.47554 * 310.00085 * 7 6 5 36 36 H 1.09004 * 109.46957 * 70.00030 * 7 6 5 37 37 H 1.08003 * 119.86805 * 359.97438 * 9 8 7 38 38 H 1.08000 * 120.12615 * 180.27747 * 10 9 8 39 39 H 0.97003 * 119.99644 * 179.97438 * 15 14 12 40 40 H 1.08000 * 120.12955 * 180.02562 * 20 11 10 41 41 H 1.08006 * 119.87075 * 180.02562 * 21 20 11 42 42 H 1.08995 * 109.40756 * 47.45991 * 22 6 5 43 43 H 1.08999 * 109.40441 * 167.30701 * 22 6 5 44 44 H 1.09003 * 109.47061 * 60.00163 * 25 23 22 45 45 H 1.09002 * 109.47317 * 179.97438 * 25 23 22 46 46 H 1.09001 * 109.47325 * 299.99871 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6067 1.9841 -0.8410 5 6 3.5680 1.4485 -0.1159 6 7 4.0581 2.8280 -0.1621 7 6 5.4294 2.8821 -0.6861 8 6 5.9870 4.2686 -0.4920 9 6 5.8214 5.2220 -1.4848 10 6 6.3222 6.4927 -1.3161 11 6 7.0133 6.8196 -0.1347 12 6 7.5361 8.1207 0.0477 13 1 7.6230 8.5332 1.0420 14 6 7.9409 8.8738 -1.0602 15 7 8.0823 10.1700 -0.9536 16 14 8.2791 8.0283 -2.6913 17 1 7.0661 8.0966 -3.5451 18 1 9.4064 8.7093 -3.3774 19 1 8.6337 6.6070 -2.4479 20 6 7.1800 5.8424 0.8639 21 6 6.6663 4.5796 0.6759 22 6 3.9651 3.5011 1.1354 23 6 2.5004 3.8229 1.4511 24 1 2.0824 4.4424 0.6577 25 6 2.4132 4.5635 2.7870 26 16 1.5759 2.2599 1.5573 27 8 0.1813 2.5332 1.5516 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 3.9986 0.9398 0.7466 34 1 3.8641 0.9282 -1.0269 35 1 6.0508 2.1626 -0.1529 36 1 5.4222 2.6390 -1.7486 37 1 5.2945 4.9674 -2.3925 38 1 6.1882 7.2351 -2.0889 39 1 8.3633 10.6920 -1.7214 40 1 7.7084 6.0826 1.7747 41 1 6.7927 3.8280 1.4411 42 1 4.3681 2.8498 1.9109 43 1 4.5397 4.4268 1.1051 44 1 2.9825 5.4910 2.7261 45 1 1.3706 4.7914 3.0088 46 1 2.8244 3.9360 3.5778 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352888708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:47 Heat of formation + Delta-G solvation = -43.877452 kcal Electronic energy + Delta-G solvation = -25342.876367 eV Core-core repulsion = 21936.350797 eV Total energy + Delta-G solvation = -3406.525570 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.150 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -40.34888 -38.70560 -36.86016 -36.09580 -35.49732 -34.19329 -32.54474 -31.49333 -29.99413 -28.28903 -26.96032 -24.69171 -23.71580 -23.13051 -22.24950 -22.16318 -21.20853 -19.34458 -18.45699 -17.52932 -17.09492 -17.01632 -16.69201 -15.97647 -15.76343 -15.67001 -15.43369 -15.17466 -15.08402 -14.63886 -14.34141 -14.08013 -14.03924 -13.73599 -13.48516 -13.45909 -13.26608 -13.15060 -12.93459 -12.81512 -12.61902 -12.42097 -12.24731 -12.23572 -11.99739 -11.92753 -11.81944 -11.73792 -11.48909 -11.33953 -10.98239 -10.47355 -9.46568 -9.38834 -9.20226 -9.01655 -8.91092 -6.48671 0.64166 0.76467 0.90819 1.24019 1.37601 1.46031 1.62696 2.10085 2.52616 2.81082 3.02091 3.57087 3.71740 3.93822 4.02341 4.10236 4.13927 4.22758 4.27053 4.36835 4.42345 4.48365 4.54488 4.61790 4.70440 4.75908 4.77456 4.84032 4.91929 4.94023 4.98494 5.06927 5.08757 5.11233 5.15363 5.19913 5.22024 5.28001 5.34925 5.39378 5.63913 5.78573 5.93190 6.05820 6.20009 6.28232 6.37303 6.44984 6.75922 6.86361 8.17708 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023054 B = 0.003244 C = 0.003064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.258574 B = 8628.264604 C = 9136.396979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.091 4.091 3 C -0.390 4.390 4 H 0.067 0.933 5 C 0.083 3.917 6 N -0.577 5.577 7 C 0.128 3.872 8 C -0.191 4.191 9 C -0.069 4.069 10 C -0.256 4.256 11 C 0.073 3.927 12 C -0.487 4.487 13 H 0.055 0.945 14 C 0.046 3.954 15 N -0.855 5.855 16 Si 0.967 3.033 17 H -0.268 1.268 18 H -0.279 1.279 19 H -0.249 1.249 20 C -0.218 4.218 21 C -0.064 4.064 22 C 0.073 3.927 23 C -0.395 4.395 24 H 0.057 0.943 25 C -0.129 4.129 26 S 1.277 4.723 27 O -0.910 6.910 28 H 0.049 0.951 29 H 0.033 0.967 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.292 0.708 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.083 0.917 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.575 -23.707 4.372 24.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.130 4.130 3 C -0.510 4.510 4 H 0.086 0.914 5 C -0.046 4.046 6 N -0.302 5.302 7 C 0.003 3.997 8 C -0.192 4.192 9 C -0.088 4.088 10 C -0.275 4.275 11 C 0.070 3.930 12 C -0.517 4.517 13 H 0.074 0.926 14 C -0.168 4.168 15 N -0.481 5.481 16 Si 0.791 3.209 17 H -0.194 1.194 18 H -0.205 1.205 19 H -0.172 1.172 20 C -0.237 4.237 21 C -0.082 4.082 22 C -0.055 4.055 23 C -0.514 4.514 24 H 0.076 0.924 25 C -0.188 4.188 26 S 1.478 4.522 27 O -0.906 6.906 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.155 0.845 42 H 0.101 0.899 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -7.442 -23.497 4.731 25.098 hybrid contribution -0.227 2.245 -2.284 3.210 sum -7.669 -21.252 2.447 22.726 Atomic orbital electron populations 1.22062 0.97111 1.02736 1.01406 1.21244 0.94395 0.91775 1.05588 1.27416 1.02765 1.05539 1.15290 0.91380 1.21844 0.90038 0.88132 1.04545 1.61058 1.23773 1.17964 1.27378 1.20701 0.86422 0.92322 1.00296 1.19459 1.07219 0.96613 0.95917 1.20743 0.97029 0.92536 0.98442 1.21083 1.08256 0.97916 1.00246 1.17881 0.90049 0.92496 0.92559 1.19511 1.39072 0.98478 0.94671 0.92634 1.26815 0.91809 0.94624 1.03561 1.69739 1.36277 1.07475 1.34652 0.85462 0.78000 0.80248 0.77190 1.19364 1.20547 1.17244 1.21219 1.07718 0.94131 1.00679 1.20893 0.95385 0.95467 0.96455 1.21970 0.92372 1.01270 0.89931 1.27363 1.06324 1.15121 1.02616 0.92411 1.21470 1.01825 1.01124 0.94395 1.69434 0.87181 0.93935 1.01608 1.92984 1.30000 1.83877 1.83705 0.93237 0.94757 0.90109 0.89281 0.87445 0.89479 0.88777 0.91721 0.90530 0.87311 0.89687 0.89806 0.87873 0.84508 0.89925 0.90191 0.92373 0.93257 0.87871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.10 9.62 71.98 0.69 -2.41 16 2 C -0.09 -1.13 5.42 30.60 0.17 -0.96 16 3 C -0.39 -6.84 2.74 30.68 0.08 -6.76 16 4 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 5 C 0.08 1.19 4.68 86.47 0.40 1.59 16 6 N -0.58 -12.77 4.55 -902.10 -4.11 -16.88 16 7 C 0.13 3.00 5.34 85.56 0.46 3.46 16 8 C -0.19 -6.30 4.14 -19.67 -0.08 -6.38 16 9 C -0.07 -2.73 9.67 22.22 0.21 -2.52 16 10 C -0.26 -12.09 7.18 22.73 0.16 -11.93 16 11 C 0.07 3.64 5.10 -21.29 -0.11 3.53 16 12 C -0.49 -27.49 9.57 23.46 0.22 -27.27 16 13 H 0.06 3.36 8.06 -2.91 -0.02 3.34 16 14 C 0.05 2.50 5.40 85.26 0.46 2.96 16 15 N -0.85 -47.99 13.93 21.83 0.30 -47.69 16 16 Si 0.97 43.90 24.52 68.60 1.68 45.58 16 17 H -0.27 -11.81 6.71 99.48 0.67 -11.14 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.25 -11.31 6.86 99.48 0.68 -10.62 16 20 C -0.22 -9.30 9.80 22.73 0.22 -9.07 16 21 C -0.06 -2.14 7.55 22.22 0.17 -1.97 16 22 C 0.07 1.64 4.13 86.47 0.36 2.00 16 23 C -0.40 -9.60 3.32 30.68 0.10 -9.50 16 24 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 25 C -0.13 -2.83 9.23 71.98 0.66 -2.16 16 26 S 1.28 25.32 12.13 -56.49 -0.69 24.64 16 27 O -0.91 -29.50 16.20 -148.98 -2.41 -31.92 16 28 H 0.05 1.09 5.86 -2.39 -0.01 1.08 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.11 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 0.65 7.92 -2.38 -0.02 0.63 16 34 H 0.09 1.18 7.96 -2.39 -0.02 1.17 16 35 H 0.06 1.17 8.02 -2.39 -0.02 1.15 16 36 H 0.08 1.74 8.08 -2.39 -0.02 1.72 16 37 H 0.11 3.93 8.06 -2.91 -0.02 3.90 16 38 H 0.09 4.18 4.73 -2.91 -0.01 4.16 16 39 H 0.29 14.77 8.30 -92.71 -0.77 14.00 16 40 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 41 H 0.14 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.08 1.20 7.91 -2.39 -0.02 1.18 16 43 H 0.08 2.35 4.77 -2.39 -0.01 2.34 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -73.51 363.94 -0.14 -73.65 By element: Atomic # 1 Polarization: 19.12 SS G_CDS: 0.88 Total: 20.01 kcal Atomic # 6 Polarization: -71.59 SS G_CDS: 4.19 Total: -67.40 kcal Atomic # 7 Polarization: -60.76 SS G_CDS: -3.80 Total: -64.56 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -2.41 Total: -31.92 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 1.68 Total: 45.58 kcal Atomic # 16 Polarization: 25.32 SS G_CDS: -0.69 Total: 24.64 kcal Total: -73.51 -0.14 -73.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352888708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.777 kcal (2) G-P(sol) polarization free energy of solvation -73.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds