Wall clock time and date at job start Tue Mar 31 2020 13:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.49408 * 2 1 4 4 C 1.53190 * 109.51785 * 239.92031 * 2 1 3 5 5 N 1.46932 * 108.77081 * 185.39841 * 4 2 1 6 6 C 1.34780 * 120.62702 * 233.58405 * 5 4 2 7 7 O 1.21284 * 120.00177 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99568 * 179.97438 * 6 5 4 9 9 C 1.50703 * 109.46754 * 180.02562 * 8 6 5 10 10 N 1.31866 * 119.63393 * 90.00879 * 9 8 6 11 11 C 1.31848 * 121.75112 * 179.97438 * 10 9 8 12 12 C 1.38236 * 120.81881 * 359.97438 * 11 10 9 13 13 C 1.38586 * 119.18959 * 0.02562 * 12 11 10 14 14 C 1.38426 * 119.63750 * 269.72899 * 9 8 6 15 15 F 1.35095 * 120.44364 * 359.97438 * 14 9 8 16 16 C 1.46924 * 118.73839 * 53.60755 * 5 4 2 17 17 C 1.53186 * 108.77784 * 306.39094 * 16 5 4 18 18 C 1.53040 * 109.49449 * 120.06815 * 2 1 3 19 19 H 1.08998 * 109.46373 * 301.34824 * 18 2 1 20 20 N 1.46496 * 109.46162 * 61.32944 * 18 2 1 21 21 C 1.36945 * 119.99718 * 204.99695 * 20 18 2 22 22 H 1.07997 * 119.99756 * 359.97438 * 21 20 18 23 23 C 1.38805 * 119.99878 * 179.97438 * 21 20 18 24 24 N 1.31624 * 120.00257 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99929 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47187 * 179.97438 * 25 23 21 27 27 H 1.48494 * 109.47141 * 300.00154 * 25 23 21 28 28 H 1.48498 * 109.47018 * 60.00200 * 25 23 21 29 29 H 1.09006 * 109.46741 * 299.93204 * 1 2 3 30 30 H 1.08998 * 109.47250 * 59.93348 * 1 2 3 31 31 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.58794 * 305.18220 * 4 2 1 33 33 H 1.08995 * 109.58801 * 65.61403 * 4 2 1 34 34 H 1.08997 * 109.47599 * 300.00629 * 8 6 5 35 35 H 1.09005 * 109.46921 * 60.00799 * 8 6 5 36 36 H 1.08003 * 119.59077 * 179.97438 * 11 10 9 37 37 H 1.08003 * 120.40543 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.79815 * 180.02562 * 13 12 11 39 39 H 1.09000 * 109.58765 * 66.18347 * 16 5 4 40 40 H 1.09002 * 109.58532 * 186.45760 * 16 5 4 41 41 H 1.09002 * 109.49818 * 294.68368 * 17 16 5 42 42 H 1.08997 * 109.50005 * 174.58815 * 17 16 5 43 43 H 0.96996 * 120.00499 * 24.99425 * 20 18 2 44 44 H 0.97001 * 119.99885 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0418 -0.7237 -1.2494 5 7 3.5052 -0.8284 -1.1690 6 6 4.2817 -0.3854 -2.1777 7 8 3.7738 0.1057 -3.1635 8 6 5.7813 -0.4993 -2.0800 9 6 6.4101 0.0645 -3.3281 10 7 6.7290 1.3431 -3.3771 11 6 7.2813 1.8799 -4.4473 12 6 7.5485 1.1136 -5.5663 13 6 7.2282 -0.2347 -5.5544 14 6 6.6520 -0.7667 -4.4082 15 9 6.3287 -2.0771 -4.3495 16 6 4.1058 -1.4256 0.0315 17 6 3.5708 -0.6941 1.2665 18 6 2.0408 -0.7228 1.2485 19 1 1.6580 -0.2242 2.1390 20 7 1.5789 -2.1130 1.2309 21 6 1.4488 -2.8061 2.4048 22 1 1.6870 -2.3280 3.3434 23 6 1.0107 -4.1231 2.3882 24 7 0.7209 -4.7060 1.2441 25 14 0.8338 -5.0689 3.9894 26 1 0.3527 -6.4439 3.7015 27 1 2.1509 -5.1374 4.6718 28 1 -0.1433 -4.3768 4.8676 29 1 -0.3633 0.5128 0.8907 30 1 -0.3634 0.5149 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6063 -1.7217 -1.2979 33 1 1.7643 -0.1580 -2.1388 34 1 6.1324 0.0593 -1.2124 35 1 6.0599 -1.5478 -1.9742 36 1 7.5279 2.9314 -4.4497 37 1 8.0007 1.5603 -6.4395 38 1 7.4260 -0.8577 -6.4142 39 1 3.8386 -2.4808 0.0875 40 1 5.1903 -1.3253 -0.0140 41 1 3.9155 0.3400 1.2546 42 1 3.9334 -1.1885 2.1677 43 1 1.3653 -2.5425 0.3879 44 1 0.4151 -5.6264 1.2326 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036155721.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:58 Heat of formation + Delta-G solvation = -33.233666 kcal Electronic energy + Delta-G solvation = -27535.097718 eV Core-core repulsion = 23595.113273 eV Total energy + Delta-G solvation = -3939.984445 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.12862 -40.55159 -39.71809 -37.65997 -34.27227 -33.49225 -32.77977 -32.01593 -31.37386 -29.18552 -28.74237 -26.06932 -24.86597 -23.80426 -23.47690 -22.76010 -21.63383 -19.63501 -18.20442 -17.85880 -17.46007 -17.40067 -17.00078 -16.54455 -15.85519 -15.42475 -15.19614 -14.58133 -14.29326 -14.22508 -13.96767 -13.85321 -13.66104 -13.48532 -13.27516 -13.20855 -12.90397 -12.51503 -12.32448 -12.19426 -11.97819 -11.49850 -11.34933 -11.17327 -10.89611 -10.78361 -10.47526 -10.45281 -10.22102 -10.16942 -9.84215 -9.81894 -9.61945 -9.54195 -9.02866 -8.92208 -8.20991 -6.97877 -5.79014 -3.07605 0.67107 0.85094 2.82682 3.12446 3.41754 3.47039 3.47778 3.51302 3.78595 4.05047 4.34370 4.44263 4.57286 4.65121 4.73466 5.04974 5.18758 5.21194 5.32885 5.36899 5.39001 5.47519 5.55702 5.59370 5.60380 5.72796 5.74414 5.83710 5.94739 6.08684 6.10762 6.26356 6.32361 6.36439 6.42408 6.52061 6.64587 6.69996 6.77676 6.94444 7.01971 7.61688 7.67955 7.71416 8.38072 8.39566 9.51016 10.07917 10.43001 11.43301 Molecular weight = 321.16amu Principal moments of inertia in cm(-1) A = 0.020783 B = 0.003093 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.901016 B = 9049.156539 C = 9582.763329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.065 0.935 4 C 0.120 3.880 5 N -0.599 5.599 6 C 0.523 3.477 7 O -0.549 6.549 8 C -0.097 4.097 9 C 0.131 3.869 10 N -0.448 5.448 11 C 0.092 3.908 12 C -0.149 4.149 13 C -0.109 4.109 14 C 0.062 3.938 15 F -0.126 7.126 16 C 0.111 3.889 17 C -0.150 4.150 18 C 0.179 3.821 19 H 0.051 0.949 20 N -0.719 5.719 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.012 4.012 24 N -0.933 5.933 25 Si 0.905 3.095 26 H -0.292 1.292 27 H -0.287 1.287 28 H -0.287 1.287 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.113 0.887 36 H 0.164 0.836 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.087 0.913 40 H 0.070 0.930 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.805 11.465 -10.818 20.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.084 0.916 4 C -0.002 4.002 5 N -0.330 5.330 6 C 0.310 3.690 7 O -0.428 6.428 8 C -0.137 4.137 9 C -0.009 4.009 10 N -0.156 5.156 11 C -0.066 4.066 12 C -0.169 4.169 13 C -0.135 4.135 14 C 0.040 3.960 15 F -0.104 7.104 16 C -0.011 4.011 17 C -0.191 4.191 18 C 0.068 3.932 19 H 0.069 0.931 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.218 1.218 27 H -0.214 1.214 28 H -0.214 1.214 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.181 0.819 37 H 0.162 0.838 38 H 0.165 0.835 39 H 0.105 0.895 40 H 0.088 0.912 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.325 12.105 -10.427 20.804 hybrid contribution 0.010 -1.571 -0.049 1.572 sum 13.335 10.534 -10.476 19.964 Atomic orbital electron populations 1.21666 0.94249 1.03168 1.00413 1.21704 0.96483 0.98874 0.95766 0.91618 1.21646 0.78413 1.01549 0.98591 1.48072 1.07162 1.59727 1.18088 1.20056 0.88131 0.77944 0.82887 1.90673 1.75344 1.45434 1.31307 1.20615 0.93372 1.03502 0.96227 1.20693 0.96468 0.89431 0.94281 1.67490 1.09525 1.10701 1.27916 1.22810 0.94733 1.00645 0.88391 1.22056 1.00971 0.93471 1.00369 1.21634 0.98034 0.96587 0.97278 1.18530 1.01568 0.79629 0.96277 1.91536 1.90430 1.31857 1.96592 1.21780 0.96347 0.99196 0.83772 1.22525 1.00511 0.98693 0.97390 1.20209 0.90781 0.87337 0.94835 0.93124 1.42479 1.79019 1.07691 1.06937 1.19171 1.37292 0.93868 0.86563 0.91308 1.24705 1.02278 0.97201 0.96581 1.69641 1.51642 1.13103 1.23701 0.86312 0.77742 0.79217 0.83143 1.21828 1.21361 1.21389 0.92811 0.93801 0.91044 0.90619 0.89875 0.86342 0.86907 0.81921 0.83794 0.83506 0.89507 0.91200 0.93194 0.90666 0.78085 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 9.06 37.16 0.34 -1.90 16 2 C -0.11 -1.80 2.67 -90.50 -0.24 -2.04 16 3 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.09 5.42 -3.71 -0.02 2.07 16 5 N -0.60 -9.85 2.97 -172.77 -0.51 -10.37 16 6 C 0.52 8.68 7.69 -10.98 -0.08 8.59 16 7 O -0.55 -10.84 15.45 5.55 0.09 -10.75 16 8 C -0.10 -1.27 4.17 -29.03 -0.12 -1.39 16 9 C 0.13 1.77 5.28 -82.51 -0.44 1.33 16 10 N -0.45 -5.82 10.27 -9.42 -0.10 -5.91 16 11 C 0.09 0.88 11.18 -17.55 -0.20 0.68 16 12 C -0.15 -1.19 10.11 -39.45 -0.40 -1.59 16 13 C -0.11 -1.05 10.16 -39.22 -0.40 -1.44 16 14 C 0.06 0.78 7.27 -39.28 -0.29 0.49 16 15 F -0.13 -1.71 16.49 2.25 0.04 -1.67 16 16 C 0.11 1.74 6.08 -3.72 -0.02 1.72 16 17 C -0.15 -2.43 5.78 -26.61 -0.15 -2.59 16 18 C 0.18 3.31 2.53 -67.89 -0.17 3.14 16 19 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 20 N -0.72 -16.43 3.64 -53.39 -0.19 -16.62 16 21 C -0.24 -6.16 9.93 -15.06 -0.15 -6.31 16 22 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 23 C -0.01 -0.32 5.50 -17.43 -0.10 -0.41 16 24 N -0.93 -27.03 13.06 55.49 0.72 -26.31 16 25 Si 0.90 21.70 29.55 -169.99 -5.02 16.68 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.35 7.54 -51.93 -0.39 0.95 16 32 H 0.08 1.45 6.64 -51.93 -0.34 1.10 16 33 H 0.08 1.47 7.00 -51.93 -0.36 1.11 16 34 H 0.12 1.35 7.70 -51.93 -0.40 0.95 16 35 H 0.11 1.30 7.42 -51.93 -0.39 0.92 16 36 H 0.16 1.03 8.06 -52.48 -0.42 0.60 16 37 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.09 1.60 7.74 -51.93 -0.40 1.19 16 40 H 0.07 0.87 5.93 -51.93 -0.31 0.56 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.38 9.44 5.92 -40.82 -0.24 9.20 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 360.57 15.07 5.43 5.43 Total: -1.00 -31.93 360.57 -8.17 -40.10 By element: Atomic # 1 Polarization: 15.25 SS G_CDS: -6.18 Total: 9.07 kcal Atomic # 6 Polarization: 2.79 SS G_CDS: -2.44 Total: 0.35 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: -0.08 Total: -59.21 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 9 Polarization: -1.71 SS G_CDS: 0.04 Total: -1.67 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.93 -8.17 -40.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036155721.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.868 kcal (2) G-P(sol) polarization free energy of solvation -31.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds