Wall clock time and date at job start Tue Mar 31 2020 13:27:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08994 * 109.47128 * 2 1 4 4 C 1.53004 * 109.47110 * 119.99782 * 2 1 3 5 5 N 1.46495 * 109.46987 * 294.99903 * 4 2 1 6 6 C 1.34785 * 120.00024 * 180.02562 * 5 4 2 7 7 O 1.21545 * 119.99770 * 359.97438 * 6 5 4 8 8 C 1.47856 * 119.99849 * 180.02562 * 6 5 4 9 9 C 1.39674 * 120.10584 * 359.72221 * 8 6 5 10 10 C 1.38045 * 120.04024 * 180.27161 * 9 8 6 11 11 C 1.38172 * 120.24430 * 0.02562 * 10 9 8 12 12 C 1.39181 * 120.20098 * 359.97438 * 11 10 9 13 13 S 1.76209 * 120.02076 * 179.97438 * 12 11 10 14 14 C 1.76207 * 99.99975 * 265.53209 * 13 12 11 15 15 H 1.08001 * 119.99538 * 5.11730 * 14 13 12 16 16 C 1.38721 * 120.00095 * 185.11879 * 14 13 12 17 17 N 1.31623 * 120.00563 * 179.97438 * 16 14 13 18 18 Si 1.86803 * 119.99785 * 359.97438 * 16 14 13 19 19 H 1.48500 * 109.47080 * 90.00384 * 18 16 14 20 20 H 1.48501 * 109.47103 * 209.99976 * 18 16 14 21 21 H 1.48493 * 109.47217 * 330.00367 * 18 16 14 22 22 C 1.38871 * 119.96235 * 0.02562 * 12 11 10 23 23 C 1.52999 * 109.47006 * 239.99612 * 2 1 3 24 24 C 1.53005 * 109.47178 * 299.99901 * 23 2 1 25 25 C 1.52994 * 109.46984 * 60.00135 * 23 2 1 26 26 C 1.52998 * 109.47006 * 180.02562 * 23 2 1 27 27 H 1.09006 * 109.47319 * 300.00468 * 1 2 3 28 28 H 1.09000 * 109.47223 * 60.00264 * 1 2 3 29 29 H 1.09004 * 109.47269 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47135 * 174.99814 * 4 2 1 31 31 H 1.08998 * 109.47178 * 54.99854 * 4 2 1 32 32 H 0.97001 * 120.00446 * 0.02562 * 5 4 2 33 33 H 1.08000 * 119.97910 * 0.27995 * 9 8 6 34 34 H 1.07994 * 119.87265 * 179.97438 * 10 9 8 35 35 H 1.07997 * 119.89729 * 179.97438 * 11 10 9 36 36 H 0.96990 * 120.00349 * 179.97438 * 17 16 14 37 37 H 1.08008 * 120.12372 * 180.02562 * 22 12 11 38 38 H 1.09005 * 109.46511 * 60.00275 * 24 23 2 39 39 H 1.09002 * 109.46701 * 179.97438 * 24 23 2 40 40 H 1.09000 * 109.47226 * 299.99983 * 24 23 2 41 41 H 1.09004 * 109.47340 * 60.00107 * 25 23 2 42 42 H 1.09011 * 109.47220 * 179.97438 * 25 23 2 43 43 H 1.09001 * 109.47521 * 299.99736 * 25 23 2 44 44 H 1.09000 * 109.47223 * 60.00124 * 26 23 2 45 45 H 1.09006 * 109.47319 * 179.97438 * 26 23 2 46 46 H 1.08996 * 109.47821 * 300.00126 * 26 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 0.0354 2.4423 6 6 1.9965 -0.4129 3.6660 7 8 2.6278 -1.4453 3.7796 8 6 1.6048 0.3505 4.8701 9 6 0.8833 1.5396 4.7418 10 6 0.5232 2.2542 5.8667 11 6 0.8743 1.7982 7.1229 12 6 1.5931 0.6146 7.2624 13 16 2.0389 0.0378 8.8666 14 6 3.6586 0.7193 8.9977 15 1 4.0346 1.3706 8.2226 16 6 4.4506 0.4192 10.0963 17 7 5.6606 0.9278 10.1941 18 14 3.7997 -0.7068 11.4372 19 1 4.1481 -2.1138 11.1144 20 1 4.4101 -0.3318 12.7380 21 1 2.3237 -0.5700 11.5252 22 6 1.9598 -0.1110 6.1366 23 6 2.0399 -0.7213 -1.2492 24 6 1.5299 -2.1639 -1.2491 25 6 1.5300 -0.0001 -2.4984 26 6 3.5699 -0.7219 -1.2489 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 3.1263 -0.7995 1.2056 31 1 1.6054 -1.7197 1.2953 32 1 1.1482 0.8592 2.3518 33 1 0.6069 1.9001 3.7620 34 1 -0.0342 3.1734 5.7644 35 1 0.5900 2.3619 7.9991 36 1 6.2142 0.7183 10.9624 37 1 2.5173 -1.0301 6.2419 38 1 0.4399 -2.1638 -1.2491 39 1 1.8929 -2.6776 -2.1393 40 1 1.8933 -2.6777 -0.3591 41 1 1.8933 1.0275 -2.4985 42 1 1.8937 -0.5138 -3.3885 43 1 0.4400 -0.0001 -2.4985 44 1 3.9329 -1.2359 -0.3589 45 1 3.9333 -1.2362 -2.1386 46 1 3.9337 0.3056 -1.2487 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001538096821.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:52 Heat of formation + Delta-G solvation = -38.194884 kcal Electronic energy + Delta-G solvation = -24133.597240 eV Core-core repulsion = 20727.318085 eV Total energy + Delta-G solvation = -3406.279155 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.150 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.20536 -39.03219 -37.73793 -34.70885 -32.49484 -31.63481 -30.69911 -30.43790 -28.36256 -27.66056 -26.00291 -25.67509 -23.73979 -22.61054 -21.99194 -20.50502 -18.88470 -18.06818 -17.29464 -16.44821 -15.83586 -15.51087 -15.27802 -15.23084 -14.92841 -14.63584 -14.34572 -14.15471 -14.06606 -13.54836 -13.44415 -13.19174 -12.91678 -12.59582 -12.41727 -12.29995 -12.22576 -12.11953 -11.93819 -11.66892 -11.52946 -11.35158 -11.18950 -11.09441 -10.83898 -10.75642 -10.66991 -10.61459 -9.93556 -9.78470 -9.21854 -9.09520 -9.07615 -8.63091 -8.15543 -7.13012 -6.32361 -4.07893 1.11544 1.59546 2.86173 3.06344 3.15599 3.27853 3.39070 3.50960 4.08133 4.26796 4.30388 4.33527 4.40354 4.75737 4.83717 4.90345 4.92406 5.00014 5.04042 5.06669 5.12519 5.18717 5.30284 5.33897 5.38736 5.49048 5.49591 5.58474 5.60068 5.64839 5.65780 5.72355 5.76935 5.79213 5.80752 5.93008 5.94940 6.08837 6.14323 6.18785 6.39452 6.52486 6.57353 6.83490 7.11398 7.49762 7.91846 8.30028 8.45233 9.11516 10.77117 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022886 B = 0.002483 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.164466 B =11275.266780 C =11839.628728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.094 4.094 3 H 0.077 0.923 4 C 0.120 3.880 5 N -0.731 5.731 6 C 0.562 3.438 7 O -0.534 6.534 8 C -0.152 4.152 9 C -0.086 4.086 10 C -0.140 4.140 11 C -0.052 4.052 12 C -0.085 4.085 13 S -0.113 6.113 14 C -0.509 4.509 15 H 0.091 0.909 16 C 0.095 3.905 17 N -0.876 5.876 18 Si 0.858 3.142 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.239 1.239 22 C -0.017 4.017 23 C -0.060 4.060 24 C -0.149 4.149 25 C -0.142 4.142 26 C -0.149 4.149 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.398 0.602 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.133 0.867 36 H 0.272 0.728 37 H 0.140 0.860 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.922 0.575 -23.395 26.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.112 4.112 3 H 0.095 0.905 4 C -0.003 4.003 5 N -0.384 5.384 6 C 0.351 3.649 7 O -0.411 6.411 8 C -0.157 4.157 9 C -0.105 4.105 10 C -0.159 4.159 11 C -0.073 4.073 12 C -0.196 4.196 13 S 0.121 5.879 14 C -0.655 4.655 15 H 0.109 0.891 16 C -0.114 4.114 17 N -0.512 5.512 18 Si 0.682 3.318 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.163 1.163 22 C -0.038 4.038 23 C -0.060 4.060 24 C -0.206 4.206 25 C -0.199 4.199 26 C -0.206 4.206 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.233 0.767 33 H 0.136 0.864 34 H 0.144 0.856 35 H 0.151 0.849 36 H 0.082 0.918 37 H 0.158 0.842 38 H 0.078 0.922 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.075 0.925 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.844 -0.827 -22.407 25.358 hybrid contribution 0.500 0.799 -0.337 1.001 sum -11.343 -0.028 -22.743 25.415 Atomic orbital electron populations 1.21988 0.94723 1.02534 1.01807 1.21405 0.96354 0.99865 0.93616 0.90478 1.21559 1.00464 0.95425 0.82884 1.45916 1.58761 1.28055 1.05668 1.18363 0.78818 0.84697 0.83054 1.90773 1.39540 1.24182 1.86651 1.19856 1.04874 0.97570 0.93420 1.21167 0.97038 0.93896 0.98422 1.21042 1.02173 1.00360 0.92357 1.21892 0.94008 0.93904 0.97477 1.22195 1.00626 0.97335 0.99416 1.83068 1.22266 1.71748 1.10800 1.22242 0.97073 1.34247 1.11978 0.89090 1.24743 0.93901 0.95293 0.97472 1.69921 1.07964 1.43152 1.30183 0.86732 0.81601 0.81776 0.81648 1.19018 1.19797 1.16336 1.21900 0.93485 0.98641 0.89815 1.20467 0.95689 0.95635 0.94254 1.22025 1.01268 0.95235 1.02109 1.21922 1.01186 1.00127 0.96710 1.21992 0.94371 1.02043 1.02210 0.92674 0.92049 0.91984 0.91066 0.91205 0.76686 0.86413 0.85641 0.84915 0.91804 0.84190 0.92241 0.92669 0.92089 0.92669 0.92634 0.92274 0.91965 0.92546 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.36 37.16 0.31 -0.66 16 2 C -0.09 -0.66 1.79 -90.62 -0.16 -0.83 16 3 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 4 C 0.12 1.21 4.34 -4.04 -0.02 1.20 16 5 N -0.73 -8.39 5.23 -61.25 -0.32 -8.71 16 6 C 0.56 9.11 7.77 -12.32 -0.10 9.01 16 7 O -0.53 -10.69 16.34 5.33 0.09 -10.61 16 8 C -0.15 -2.55 5.87 -105.00 -0.62 -3.16 16 9 C -0.09 -1.15 9.54 -39.12 -0.37 -1.53 16 10 C -0.14 -1.94 10.02 -39.68 -0.40 -2.34 16 11 C -0.05 -0.90 9.79 -39.26 -0.38 -1.29 16 12 C -0.09 -1.78 5.45 -39.00 -0.21 -1.99 16 13 S -0.11 -2.75 19.38 -107.50 -2.08 -4.83 16 14 C -0.51 -14.68 10.01 30.91 0.31 -14.37 16 15 H 0.09 2.85 8.02 -52.49 -0.42 2.43 16 16 C 0.09 2.75 5.50 -17.46 -0.10 2.65 16 17 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 18 Si 0.86 21.14 27.73 -169.99 -4.71 16.43 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 H -0.24 -5.70 6.74 56.52 0.38 -5.32 16 22 C -0.02 -0.34 9.34 -38.92 -0.36 -0.70 16 23 C -0.06 -0.39 0.57 -154.51 -0.09 -0.48 16 24 C -0.15 -1.01 7.77 37.16 0.29 -0.72 16 25 C -0.14 -0.80 8.12 37.15 0.30 -0.50 16 26 C -0.15 -1.06 8.13 37.16 0.30 -0.76 16 27 H 0.05 0.35 7.18 -51.93 -0.37 -0.03 16 28 H 0.06 0.33 6.43 -51.93 -0.33 0.00 16 29 H 0.06 0.41 6.43 -51.93 -0.33 0.08 16 30 H 0.07 0.81 6.17 -51.93 -0.32 0.49 16 31 H 0.07 0.77 6.71 -51.93 -0.35 0.42 16 32 H 0.40 3.49 5.68 -40.82 -0.23 3.26 16 33 H 0.12 1.09 6.40 -52.49 -0.34 0.76 16 34 H 0.13 1.31 8.06 -52.49 -0.42 0.89 16 35 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 36 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 37 H 0.14 3.05 7.65 -52.48 -0.40 2.65 16 38 H 0.06 0.37 6.43 -51.93 -0.33 0.04 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.47 6.54 -51.93 -0.34 0.13 16 41 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.05 0.30 8.14 -51.92 -0.42 -0.12 16 43 H 0.06 0.31 6.43 -51.93 -0.33 -0.03 16 44 H 0.06 0.51 6.32 -51.93 -0.33 0.18 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 46 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 375.65 15.07 5.66 5.66 Total: -1.00 -32.88 375.65 -8.86 -41.74 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: -6.97 Total: 2.47 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -1.30 Total: -16.46 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.45 Total: -34.39 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.61 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.71 Total: 16.43 kcal Atomic # 16 Polarization: -2.75 SS G_CDS: -2.08 Total: -4.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.88 -8.86 -41.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001538096821.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.550 kcal (2) G-P(sol) polarization free energy of solvation -32.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds