Wall clock time and date at job start Tue Mar 31 2020 12:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 116.99947 * 2 1 4 4 C 1.38731 * 120.05665 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94491 * 180.29771 * 4 3 2 6 6 C 1.38276 * 120.05445 * 359.41786 * 5 4 3 7 7 C 1.50699 * 119.94160 * 180.29859 * 6 5 4 8 8 N 1.46897 * 109.47262 * 276.15658 * 7 6 5 9 9 C 1.46901 * 111.00256 * 290.24357 * 8 7 6 10 10 C 1.53005 * 109.47144 * 170.00293 * 9 8 7 11 11 C 1.53002 * 109.47056 * 179.97438 * 10 9 8 12 12 S 1.80991 * 109.47077 * 179.97438 * 11 10 9 13 13 C 1.76205 * 100.00163 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99911 * 0.02562 * 13 12 11 15 15 C 1.38796 * 120.00374 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00503 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99673 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46766 * 90.00344 * 17 15 13 19 19 H 1.48501 * 109.46910 * 210.00364 * 17 15 13 20 20 H 1.48494 * 109.47258 * 330.00324 * 17 15 13 21 21 C 1.46899 * 111.00238 * 166.28772 * 8 7 6 22 22 C 1.53012 * 117.49399 * 3.56766 * 21 8 7 23 23 C 1.53001 * 117.49732 * 294.91221 * 21 8 7 24 24 C 1.38267 * 120.10923 * 0.60705 * 6 5 4 25 25 C 1.38144 * 120.05614 * 359.66882 * 24 6 5 26 26 H 1.08998 * 109.46956 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47072 * 300.00303 * 1 2 3 28 28 H 1.08999 * 109.47042 * 60.00568 * 1 2 3 29 29 H 1.08001 * 120.02897 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.97423 * 179.70051 * 5 4 3 31 31 H 1.08992 * 109.47609 * 36.16202 * 7 6 5 32 32 H 1.09003 * 109.46624 * 156.16293 * 7 6 5 33 33 H 1.09004 * 109.47193 * 289.99669 * 9 8 7 34 34 H 1.08993 * 109.47209 * 49.99569 * 9 8 7 35 35 H 1.09004 * 109.46566 * 299.99759 * 10 9 8 36 36 H 1.08988 * 109.47223 * 59.99642 * 10 9 8 37 37 H 1.08998 * 109.47069 * 300.00091 * 11 10 9 38 38 H 1.09004 * 109.46888 * 59.99878 * 11 10 9 39 39 H 0.97001 * 120.00571 * 179.97438 * 16 15 13 40 40 H 1.08991 * 115.55445 * 149.23824 * 21 8 7 41 41 H 1.08991 * 117.49538 * 0.02562 * 22 21 8 42 42 H 1.09002 * 117.48941 * 145.02030 * 22 21 8 43 43 H 1.09000 * 117.50129 * 214.97498 * 23 21 8 44 44 H 1.09000 * 117.50119 * 359.97341 * 23 21 8 45 45 H 1.08002 * 119.97179 * 179.70059 * 24 6 5 46 46 H 1.07994 * 120.02834 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 0.0057 6 6 3.3019 3.6759 0.0003 7 6 3.9861 5.0186 0.0003 8 7 4.3352 5.3903 1.3779 9 6 3.1314 5.6986 2.1612 10 6 3.5054 5.8360 3.6385 11 6 2.2516 6.1578 4.4542 12 16 2.6940 6.3197 6.2018 13 6 1.1105 6.6785 6.8863 14 1 0.2448 6.7367 6.2432 15 6 0.9757 6.8863 8.2520 16 7 -0.2071 7.1549 8.7633 17 14 2.4730 6.7849 9.3645 18 1 3.1001 8.1266 9.4737 19 1 2.0574 6.3214 10.7127 20 1 3.4515 5.8263 8.7913 21 6 5.2781 6.5166 1.3965 22 6 5.6557 7.1439 0.0529 23 6 6.6707 6.2818 0.8078 24 6 1.9210 3.6048 0.0013 25 6 1.2915 2.3751 0.0008 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 4.0209 0.3800 -0.0014 30 1 5.1346 2.5751 0.0102 31 1 4.8927 4.9644 -0.6023 32 1 3.3151 5.7682 -0.4193 33 1 2.6976 6.6341 1.8078 34 1 2.4054 4.8942 2.0435 35 1 3.9392 4.9006 3.9919 36 1 4.2313 6.6404 3.7561 37 1 1.8183 7.0933 4.1006 38 1 1.5253 5.3536 4.3366 39 1 -0.3014 7.2998 9.7178 40 1 5.2012 7.1800 2.2578 41 1 5.2041 6.7212 -0.8445 42 1 5.8274 8.2201 0.0307 43 1 7.5099 6.7911 1.2816 44 1 6.8874 5.2915 0.4071 45 1 1.3341 4.5114 0.0020 46 1 0.2130 2.3202 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074980708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:42 Heat of formation + Delta-G solvation = 11.570368 kcal Electronic energy + Delta-G solvation = -24081.830692 eV Core-core repulsion = 20677.709521 eV Total energy + Delta-G solvation = -3404.121172 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.41392 -39.26121 -37.49108 -34.91381 -32.78513 -32.42047 -31.24938 -30.27685 -27.82809 -26.34998 -25.61338 -24.33799 -22.89028 -22.48902 -21.87694 -21.22787 -19.60344 -18.31828 -17.45652 -16.94024 -16.35481 -15.99217 -15.84878 -15.39714 -14.97766 -14.76483 -14.52474 -14.30755 -13.98066 -13.64806 -13.50636 -13.20506 -13.04831 -12.81413 -12.54034 -12.22768 -12.07090 -11.90619 -11.76703 -11.51452 -11.33873 -11.14635 -11.07774 -10.99459 -10.98003 -10.85613 -10.45474 -10.26613 -10.10013 -9.75016 -9.12110 -8.98892 -8.53425 -8.34843 -8.13331 -6.91591 -6.26924 -3.98674 1.21467 1.23305 3.02286 3.07388 3.31293 3.39790 3.47707 3.61920 3.73166 3.99456 4.33426 4.57645 4.64033 4.70766 4.74211 4.82645 4.83243 4.85252 4.91350 4.95307 5.05128 5.11990 5.17965 5.22388 5.26095 5.32060 5.41246 5.49712 5.52838 5.58459 5.63846 5.70008 5.77681 5.87562 5.90256 5.97836 6.03922 6.10098 6.19354 6.26326 6.47907 6.52906 6.59884 6.67806 6.97587 7.06557 7.20205 7.96872 8.45512 9.19258 10.82626 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003194 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.737964 B = 8764.219836 C =10931.813132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.320 6.320 3 C 0.126 3.874 4 C -0.153 4.153 5 C -0.056 4.056 6 C -0.114 4.114 7 C 0.094 3.906 8 N -0.500 5.500 9 C 0.059 3.941 10 C -0.095 4.095 11 C -0.081 4.081 12 S -0.214 6.214 13 C -0.502 4.502 14 H 0.087 0.913 15 C 0.092 3.908 16 N -0.883 5.883 17 Si 0.861 3.139 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.237 1.237 21 C 0.023 3.977 22 C -0.222 4.222 23 C -0.171 4.171 24 C -0.072 4.072 25 C -0.207 4.207 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.084 0.916 32 H 0.044 0.956 33 H 0.035 0.965 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.270 0.730 40 H 0.123 0.877 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.777 -8.484 -22.939 25.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.233 6.233 3 C 0.080 3.920 4 C -0.172 4.172 5 C -0.075 4.075 6 C -0.115 4.115 7 C -0.032 4.032 8 N -0.221 5.221 9 C -0.070 4.070 10 C -0.134 4.134 11 C -0.230 4.230 12 S 0.013 5.987 13 C -0.649 4.649 14 H 0.105 0.895 15 C -0.116 4.116 16 N -0.520 5.520 17 Si 0.686 3.314 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.161 1.161 21 C -0.086 4.086 22 C -0.261 4.261 23 C -0.209 4.209 24 C -0.091 4.091 25 C -0.226 4.226 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.147 0.853 30 H 0.147 0.853 31 H 0.102 0.898 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.141 0.859 41 H 0.116 0.884 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.140 0.860 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 8.953 -9.147 -22.021 25.471 hybrid contribution -1.522 1.012 -0.200 1.838 sum 7.432 -8.135 -22.221 24.803 Atomic orbital electron populations 1.23060 0.78346 1.03911 1.01498 1.86058 1.21438 1.27070 1.88739 1.19053 0.92416 0.84097 0.96401 1.20416 0.91318 0.98688 1.06775 1.20782 0.99831 0.90702 0.96180 1.19629 0.93177 0.94930 1.03736 1.21085 0.99142 0.92775 0.90246 1.61851 1.14044 1.35011 1.11244 1.22228 0.91148 0.99933 0.93685 1.21331 0.97066 1.02810 0.92206 1.23007 0.99562 1.03124 0.97339 1.84161 1.18786 1.93548 1.02171 1.22133 0.91617 1.54995 0.96172 0.89496 1.24790 0.96238 0.93387 0.97220 1.69935 1.22527 1.46233 1.13304 0.86676 0.83696 0.80347 0.80679 1.19402 1.20119 1.16101 1.22747 0.94712 0.94502 0.96632 1.23594 1.05714 0.99658 0.97151 1.23046 0.93014 1.00996 1.03817 1.20864 0.94001 0.97071 0.97130 1.21196 1.00031 0.92303 1.09033 0.88289 0.92396 0.92734 0.85309 0.85342 0.89761 0.93738 0.94624 0.90246 0.90671 0.91633 0.91698 0.91488 0.92007 0.85920 0.88441 0.88919 0.88556 0.88688 0.85987 0.85520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.50 10.50 -19.42 -0.20 -3.70 16 3 C 0.13 1.43 6.69 -39.21 -0.26 1.17 16 4 C -0.15 -1.67 9.99 -39.43 -0.39 -2.06 16 5 C -0.06 -0.59 9.72 -39.60 -0.38 -0.97 16 6 C -0.11 -1.22 4.86 -104.60 -0.51 -1.72 16 7 C 0.09 0.94 3.76 -4.98 -0.02 0.92 16 8 N -0.50 -5.82 4.67 -228.08 -1.06 -6.89 16 9 C 0.06 0.78 4.77 -3.82 -0.02 0.76 16 10 C -0.10 -1.51 5.20 -26.73 -0.14 -1.65 16 11 C -0.08 -1.60 5.67 37.16 0.21 -1.39 16 12 S -0.21 -5.31 19.41 -107.50 -2.09 -7.39 16 13 C -0.50 -14.72 10.04 30.94 0.31 -14.41 16 14 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 15 C 0.09 2.71 5.50 -17.43 -0.10 2.61 16 16 N -0.88 -27.00 13.97 55.49 0.78 -26.23 16 17 Si 0.86 21.78 27.74 -169.99 -4.72 17.06 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 21 C 0.02 0.25 5.78 -67.71 -0.39 -0.14 16 22 C -0.22 -1.97 9.51 -26.69 -0.25 -2.23 16 23 C -0.17 -1.57 10.01 -26.69 -0.27 -1.83 16 24 C -0.07 -0.77 8.22 -39.61 -0.33 -1.09 16 25 C -0.21 -2.21 9.04 -39.43 -0.36 -2.57 16 26 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.06 16 29 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 30 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 31 H 0.08 0.75 5.97 -51.93 -0.31 0.43 16 32 H 0.04 0.43 7.84 -51.93 -0.41 0.02 16 33 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.08 1.08 6.06 -51.93 -0.31 0.76 16 35 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.07 1.02 6.45 -51.94 -0.33 0.69 16 37 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 38 H 0.07 1.33 8.14 -51.91 -0.42 0.91 16 39 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.12 1.42 6.38 -51.93 -0.33 1.09 16 41 H 0.10 0.81 5.87 -51.93 -0.31 0.50 16 42 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.09 0.85 7.86 -51.93 -0.41 0.44 16 45 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 46 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -32.14 381.34 -10.79 -42.94 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -7.34 Total: 1.89 kcal Atomic # 6 Polarization: -21.52 SS G_CDS: -1.90 Total: -23.42 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: -0.29 Total: -33.12 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: -0.20 Total: -3.70 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -4.72 Total: 17.06 kcal Atomic # 16 Polarization: -5.31 SS G_CDS: -2.09 Total: -7.39 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.14 -10.79 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.506 kcal (2) G-P(sol) polarization free energy of solvation -32.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds