Wall clock time and date at job start Tue Mar 31 2020 12:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35898 * 116.99947 * 2 1 4 4 C 1.38731 * 120.05665 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94491 * 180.29771 * 4 3 2 6 6 C 1.38276 * 120.05445 * 359.41786 * 5 4 3 7 7 C 1.50699 * 119.94160 * 180.29859 * 6 5 4 8 8 N 1.46897 * 109.47262 * 276.15658 * 7 6 5 9 9 C 1.46901 * 111.00256 * 290.24357 * 8 7 6 10 10 C 1.53005 * 109.47144 * 170.00293 * 9 8 7 11 11 C 1.53002 * 109.47056 * 179.97438 * 10 9 8 12 12 S 1.80991 * 109.47077 * 179.97438 * 11 10 9 13 13 C 1.76205 * 100.00163 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99911 * 0.02562 * 13 12 11 15 15 C 1.38796 * 120.00374 * 180.02562 * 13 12 11 16 16 N 1.31625 * 120.00503 * 179.97438 * 15 13 12 17 17 Si 1.86810 * 119.99673 * 359.97438 * 15 13 12 18 18 H 1.48498 * 109.46766 * 90.00344 * 17 15 13 19 19 H 1.48501 * 109.46910 * 210.00364 * 17 15 13 20 20 H 1.48494 * 109.47258 * 330.00324 * 17 15 13 21 21 C 1.46899 * 111.00238 * 166.28772 * 8 7 6 22 22 C 1.53012 * 117.49399 * 3.56766 * 21 8 7 23 23 C 1.53001 * 117.49732 * 294.91221 * 21 8 7 24 24 C 1.38267 * 120.10923 * 0.60705 * 6 5 4 25 25 C 1.38144 * 120.05614 * 359.66882 * 24 6 5 26 26 H 1.08998 * 109.46956 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47072 * 300.00303 * 1 2 3 28 28 H 1.08999 * 109.47042 * 60.00568 * 1 2 3 29 29 H 1.08001 * 120.02897 * 0.02562 * 4 3 2 30 30 H 1.08005 * 119.97423 * 179.70051 * 5 4 3 31 31 H 1.08992 * 109.47609 * 36.16202 * 7 6 5 32 32 H 1.09003 * 109.46624 * 156.16293 * 7 6 5 33 33 H 1.09004 * 109.47193 * 289.99669 * 9 8 7 34 34 H 1.08993 * 109.47209 * 49.99569 * 9 8 7 35 35 H 1.09004 * 109.46566 * 299.99759 * 10 9 8 36 36 H 1.08988 * 109.47223 * 59.99642 * 10 9 8 37 37 H 1.08998 * 109.47069 * 300.00091 * 11 10 9 38 38 H 1.09004 * 109.46888 * 59.99878 * 11 10 9 39 39 H 0.97001 * 120.00571 * 179.97438 * 16 15 13 40 40 H 1.08991 * 115.55445 * 149.23824 * 21 8 7 41 41 H 1.08991 * 117.49538 * 0.02562 * 22 21 8 42 42 H 1.09002 * 117.48941 * 145.02030 * 22 21 8 43 43 H 1.09000 * 117.50129 * 214.97498 * 23 21 8 44 44 H 1.09000 * 117.50119 * 359.97341 * 23 21 8 45 45 H 1.08002 * 119.97179 * 179.70059 * 24 6 5 46 46 H 1.07994 * 120.02834 * 180.02562 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0561 2.5169 0.0057 6 6 3.3019 3.6759 0.0003 7 6 3.9861 5.0186 0.0003 8 7 4.3352 5.3903 1.3779 9 6 3.1314 5.6986 2.1612 10 6 3.5054 5.8360 3.6385 11 6 2.2516 6.1578 4.4542 12 16 2.6940 6.3197 6.2018 13 6 1.1105 6.6785 6.8863 14 1 0.2448 6.7367 6.2432 15 6 0.9757 6.8863 8.2520 16 7 -0.2071 7.1549 8.7633 17 14 2.4730 6.7849 9.3645 18 1 3.1001 8.1266 9.4737 19 1 2.0574 6.3214 10.7127 20 1 3.4515 5.8263 8.7913 21 6 5.2781 6.5166 1.3965 22 6 5.6557 7.1439 0.0529 23 6 6.6707 6.2818 0.8078 24 6 1.9210 3.6048 0.0013 25 6 1.2915 2.3751 0.0008 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 4.0209 0.3800 -0.0014 30 1 5.1346 2.5751 0.0102 31 1 4.8927 4.9644 -0.6023 32 1 3.3151 5.7682 -0.4193 33 1 2.6976 6.6341 1.8078 34 1 2.4054 4.8942 2.0435 35 1 3.9392 4.9006 3.9919 36 1 4.2313 6.6404 3.7561 37 1 1.8183 7.0933 4.1006 38 1 1.5253 5.3536 4.3366 39 1 -0.3014 7.2998 9.7178 40 1 5.2012 7.1800 2.2578 41 1 5.2041 6.7212 -0.8445 42 1 5.8274 8.2201 0.0307 43 1 7.5099 6.7911 1.2816 44 1 6.8874 5.2915 0.4071 45 1 1.3341 4.5114 0.0020 46 1 0.2130 2.3202 0.0012 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000074980708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:41 Heat of formation + Delta-G solvation = -6.510359 kcal Electronic energy + Delta-G solvation = -24082.614732 eV Core-core repulsion = 20677.709521 eV Total energy + Delta-G solvation = -3404.905211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.150 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.19192 -40.07741 -38.25654 -35.95455 -34.69300 -33.81299 -32.02912 -31.20899 -28.54234 -28.00407 -27.21159 -25.31807 -23.72053 -23.18184 -22.93294 -22.17686 -20.49830 -19.61376 -19.07572 -17.78912 -17.13011 -17.11633 -16.89536 -16.62445 -16.27574 -16.06145 -15.78462 -15.33505 -14.96412 -14.77469 -14.47867 -14.46340 -14.23599 -13.87387 -13.61223 -13.41846 -13.20548 -13.11246 -12.97846 -12.86880 -12.56586 -12.40285 -12.09849 -12.05651 -11.94783 -11.85977 -11.70982 -11.59861 -11.36139 -11.17394 -11.13730 -10.56586 -9.91914 -9.16894 -9.00025 -8.95913 -8.52600 -6.23743 0.41470 0.42583 1.12088 1.31305 1.47746 1.73719 2.24498 2.38831 2.58710 2.69220 2.85530 2.95836 3.17389 3.80973 3.84027 3.92886 3.96043 3.98638 4.11063 4.16659 4.22445 4.26995 4.34254 4.36321 4.37732 4.44970 4.51679 4.57596 4.66553 4.72024 4.73412 4.78581 4.79777 4.84039 4.99041 5.10760 5.11447 5.19208 5.27963 5.31531 5.31961 5.39988 5.68127 5.69063 5.83871 6.09047 6.11001 6.15449 6.44810 6.91650 8.60588 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.009802 B = 0.003194 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2855.737964 B = 8764.219836 C =10931.813132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.337 6.337 3 C 0.110 3.890 4 C -0.166 4.166 5 C -0.060 4.060 6 C -0.121 4.121 7 C 0.099 3.901 8 N -0.505 5.505 9 C 0.070 3.930 10 C -0.082 4.082 11 C -0.068 4.068 12 S -0.219 6.219 13 C -0.522 4.522 14 H 0.050 0.950 15 C 0.039 3.961 16 N -0.923 5.923 17 Si 0.925 3.075 18 H -0.260 1.260 19 H -0.262 1.262 20 H -0.230 1.230 21 C 0.001 3.999 22 C -0.209 4.209 23 C -0.164 4.164 24 C -0.081 4.081 25 C -0.215 4.215 26 H 0.119 0.881 27 H 0.056 0.944 28 H 0.066 0.934 29 H 0.137 0.863 30 H 0.143 0.857 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.277 0.723 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.131 0.869 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.606 -8.595 -23.973 27.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.251 6.251 3 C 0.065 3.935 4 C -0.185 4.185 5 C -0.078 4.078 6 C -0.122 4.122 7 C -0.027 4.027 8 N -0.227 5.227 9 C -0.060 4.060 10 C -0.121 4.121 11 C -0.217 4.217 12 S 0.009 5.991 13 C -0.670 4.670 14 H 0.068 0.932 15 C -0.166 4.166 16 N -0.561 5.561 17 Si 0.746 3.254 18 H -0.185 1.185 19 H -0.187 1.187 20 H -0.153 1.153 21 C -0.108 4.108 22 C -0.248 4.248 23 C -0.202 4.202 24 C -0.100 4.100 25 C -0.234 4.234 26 H 0.137 0.863 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.155 0.845 30 H 0.161 0.839 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.149 0.851 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 10.778 -9.258 -23.070 27.094 hybrid contribution -2.166 1.027 0.003 2.398 sum 8.611 -8.231 -23.067 25.961 Atomic orbital electron populations 1.23295 0.76759 1.05446 1.01978 1.86031 1.23192 1.27082 1.88770 1.19285 0.92901 0.84523 0.96782 1.20654 0.91505 0.99377 1.06940 1.20990 1.00635 0.90475 0.95740 1.19780 0.93276 0.95393 1.03756 1.21103 0.99874 0.92389 0.89382 1.61807 1.13223 1.35549 1.12127 1.21999 0.91909 1.00057 0.91985 1.21198 0.95000 1.02408 0.93448 1.23056 1.01415 1.03055 0.94149 1.83862 1.15899 1.93436 1.05932 1.22342 0.92977 1.55229 0.96451 0.93219 1.25765 0.99351 0.92761 0.98709 1.70033 1.24795 1.47086 1.14156 0.85724 0.79898 0.80867 0.78936 1.18481 1.18686 1.15343 1.22755 0.95720 0.94831 0.97517 1.23626 1.04758 1.00066 0.96306 1.23106 0.92422 1.01405 1.03239 1.21059 0.94366 0.97421 0.97128 1.21399 1.00824 0.92232 1.08950 0.86328 0.92538 0.91584 0.84502 0.83904 0.88304 0.93170 0.94174 0.90632 0.91500 0.91101 0.91632 0.91967 0.91386 0.87040 0.87567 0.88305 0.87895 0.88254 0.85146 0.84303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 9.81 113.37 1.11 1.38 16 2 O -0.34 -7.23 10.50 -92.40 -0.97 -8.20 16 3 C 0.11 2.47 6.69 22.51 0.15 2.62 16 4 C -0.17 -3.51 9.99 22.36 0.22 -3.28 16 5 C -0.06 -1.17 9.72 22.26 0.22 -0.95 16 6 C -0.12 -2.40 4.86 -19.85 -0.10 -2.50 16 7 C 0.10 1.74 3.76 85.56 0.32 2.06 16 8 N -0.51 -10.78 4.67 -875.52 -4.09 -14.87 16 9 C 0.07 1.74 4.77 86.30 0.41 2.15 16 10 C -0.08 -2.50 5.20 30.60 0.16 -2.34 16 11 C -0.07 -2.64 5.67 71.98 0.41 -2.24 16 12 S -0.22 -10.77 19.41 -56.49 -1.10 -11.86 16 13 C -0.52 -31.29 10.04 67.95 0.68 -30.60 16 14 H 0.05 3.23 8.03 -2.91 -0.02 3.21 16 15 C 0.04 2.31 5.50 84.86 0.47 2.77 16 16 N -0.92 -57.32 13.97 21.65 0.30 -57.02 16 17 Si 0.92 44.65 27.74 68.60 1.90 46.55 16 18 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 20 H -0.23 -10.76 6.74 99.48 0.67 -10.09 16 21 C 0.00 0.01 5.78 44.92 0.26 0.27 16 22 C -0.21 -3.13 9.51 30.62 0.29 -2.84 16 23 C -0.16 -2.58 10.01 30.62 0.31 -2.27 16 24 C -0.08 -1.65 8.22 22.25 0.18 -1.46 16 25 C -0.22 -4.46 9.04 22.37 0.20 -4.26 16 26 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 28 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 29 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 30 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 31 H 0.10 1.46 5.97 -2.39 -0.01 1.44 16 32 H 0.05 0.84 7.84 -2.39 -0.02 0.82 16 33 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 34 H 0.08 1.96 6.06 -2.39 -0.01 1.94 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.07 2.11 6.45 -2.39 -0.02 2.10 16 37 H 0.06 2.55 8.14 -2.40 -0.02 2.53 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.28 15.82 8.31 -92.71 -0.77 15.05 16 40 H 0.11 2.41 6.38 -2.39 -0.02 2.40 16 41 H 0.11 1.42 5.87 -2.39 -0.01 1.40 16 42 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.10 1.49 7.86 -2.39 -0.02 1.47 16 45 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 46 H 0.14 2.38 6.30 -2.91 -0.02 2.36 16 Total: -1.00 -69.16 381.34 2.27 -66.89 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.92 Total: 19.98 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 5.30 Total: -41.48 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -3.78 Total: -71.88 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.97 Total: -8.20 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 1.90 Total: 46.55 kcal Atomic # 16 Polarization: -10.77 SS G_CDS: -1.10 Total: -11.86 kcal Total: -69.16 2.27 -66.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.384 kcal (2) G-P(sol) polarization free energy of solvation -69.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds