Wall clock time and date at job start Tue Mar 31 2020 12:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36003 * 117.00228 * 2 1 4 4 C 1.38736 * 119.79212 * 0.02562 * 3 2 1 5 5 C 1.38312 * 119.84743 * 180.19951 * 4 3 2 6 6 C 1.38715 * 119.25555 * 0.03763 * 5 4 3 7 7 C 1.37457 * 121.21165 * 359.51607 * 6 5 4 8 8 C 1.38601 * 119.58594 * 0.66045 * 7 6 5 9 9 C 1.51416 * 121.53084 * 181.17562 * 7 6 5 10 10 H 1.09003 * 109.58909 * 195.08956 * 9 7 6 11 11 N 1.46905 * 109.58790 * 315.50904 * 9 7 6 12 12 C 1.46904 * 110.99687 * 282.17434 * 11 9 7 13 13 C 1.53001 * 109.46754 * 179.97438 * 12 11 9 14 14 C 1.53005 * 109.47099 * 179.97438 * 13 12 11 15 15 C 1.50692 * 109.47282 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00343 * 0.02562 * 15 14 13 17 17 C 1.37882 * 120.00089 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99787 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99973 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47076 * 60.00001 * 19 17 15 21 21 H 1.48496 * 109.46973 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47130 * 299.99892 * 19 17 15 23 23 C 1.53106 * 108.78163 * 75.29871 * 9 7 6 24 24 C 1.51174 * 111.42327 * 268.51698 * 23 9 7 25 25 C 1.51490 * 116.25494 * 71.61025 * 24 23 9 26 26 S 1.77502 * 119.94954 * 179.08262 * 6 5 4 27 27 H 1.08991 * 109.47486 * 60.00112 * 1 2 3 28 28 H 1.09000 * 109.46829 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46836 * 299.99800 * 1 2 3 30 30 H 1.07994 * 120.07634 * 359.91898 * 4 3 2 31 31 H 1.08004 * 120.37415 * 180.02562 * 5 4 3 32 32 H 1.07998 * 120.15477 * 179.62433 * 8 7 6 33 33 H 1.00899 * 111.00264 * 158.22287 * 11 9 7 34 34 H 1.08995 * 109.46798 * 299.99415 * 12 11 9 35 35 H 1.09000 * 109.46952 * 59.99716 * 12 11 9 36 36 H 1.08992 * 109.47467 * 300.00332 * 13 12 11 37 37 H 1.09004 * 109.46780 * 60.00102 * 13 12 11 38 38 H 1.09003 * 109.46971 * 300.00804 * 14 13 12 39 39 H 1.09000 * 109.46576 * 60.00257 * 14 13 12 40 40 H 0.97002 * 119.99767 * 179.97438 * 18 17 15 41 41 H 1.08997 * 109.09145 * 148.01442 * 23 9 7 42 42 H 1.08997 * 109.03536 * 28.97813 * 23 9 7 43 43 H 1.09002 * 108.12092 * 309.84646 * 24 23 9 44 44 H 1.08993 * 108.12113 * 193.37537 * 24 23 9 45 45 H 1.09004 * 109.39692 * 170.20726 * 25 24 23 46 46 H 1.09000 * 109.40624 * 50.46304 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2867 2.3726 0.0005 5 6 1.9134 3.6055 -0.0036 6 6 3.2994 3.6614 -0.0091 7 6 4.0586 2.5155 -0.0005 8 6 3.4317 1.2794 0.0000 9 6 5.5717 2.5682 0.0200 10 1 5.9750 1.5903 -0.2433 11 7 6.0426 3.5735 -0.9421 12 6 5.9832 3.0559 -2.3157 13 6 6.4797 4.1289 -3.2868 14 6 6.4185 3.5897 -4.7174 15 6 6.9081 4.6462 -5.6738 16 1 7.2311 5.6062 -5.2989 17 6 6.9437 4.3874 -7.0277 18 7 6.5509 3.2183 -7.4842 19 14 7.5500 5.6974 -8.2134 20 1 8.9517 6.0565 -7.8797 21 1 7.4895 5.1744 -9.6019 22 1 6.6900 6.9029 -8.1011 23 6 6.0325 2.9509 1.4291 24 6 6.1908 4.4476 1.5707 25 6 4.9107 5.2570 1.6020 26 16 4.1228 5.2336 -0.0392 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2083 2.3136 -0.0004 31 1 1.3303 4.5146 -0.0028 32 1 4.0192 0.3731 0.0006 33 1 6.9747 3.8846 -0.7129 34 1 6.6141 2.1709 -2.3980 35 1 4.9542 2.7927 -2.5606 36 1 5.8487 5.0137 -3.2043 37 1 7.5087 4.3924 -3.0419 38 1 7.0499 2.7049 -4.7995 39 1 5.3897 3.3258 -4.9624 40 1 6.5756 3.0364 -8.4367 41 1 6.9890 2.4702 1.6342 42 1 5.2954 2.6005 2.1516 43 1 6.7975 4.8046 0.7385 44 1 6.7393 4.6448 2.4918 45 1 5.1397 6.2860 1.8791 46 1 4.2292 4.8285 2.3369 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187950708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:03 Heat of formation + Delta-G solvation = -12.227943 kcal Electronic energy + Delta-G solvation = -25044.341131 eV Core-core repulsion = 21639.187987 eV Total energy + Delta-G solvation = -3405.153144 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 321.150 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.37949 -38.67935 -36.60648 -34.70289 -33.02159 -31.81544 -30.73966 -29.96275 -28.47226 -27.43633 -25.83790 -24.20912 -22.83573 -22.34274 -21.79242 -20.10841 -19.62968 -17.77635 -17.08520 -16.65166 -16.31409 -15.92257 -15.79640 -15.28861 -14.75584 -14.61912 -14.34497 -14.08776 -13.96307 -13.65300 -13.23320 -13.12797 -12.94925 -12.65855 -12.40545 -12.14076 -11.91072 -11.65715 -11.50373 -11.44227 -11.29156 -10.97819 -10.80646 -10.71879 -10.67007 -10.47543 -10.32408 -9.74658 -9.55726 -9.23528 -8.98387 -8.86713 -8.52296 -8.25497 -8.14946 -6.54114 -5.91009 -3.92506 1.12529 1.23390 2.09945 2.83089 3.09454 3.39345 3.43006 3.46125 3.65219 4.40811 4.50632 4.55593 4.67005 4.75292 4.81048 4.89774 4.93333 4.96872 5.06365 5.20223 5.24090 5.37543 5.42756 5.44576 5.48625 5.60482 5.75608 5.81490 5.85932 5.92505 5.95617 5.98611 6.08367 6.20108 6.27475 6.40340 6.49569 6.58569 6.89218 6.93912 7.21641 7.29140 7.48704 7.76216 7.80042 7.96834 8.10817 8.54391 9.14875 9.70798 11.20491 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011932 B = 0.003480 C = 0.003010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.986398 B = 8043.031462 C = 9299.610677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.139 3.861 4 C -0.215 4.215 5 C -0.041 4.041 6 C -0.118 4.118 7 C 0.000 4.000 8 C -0.156 4.156 9 C 0.119 3.881 10 H 0.054 0.946 11 N -0.653 5.653 12 C 0.061 3.939 13 C -0.101 4.101 14 C 0.023 3.977 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.096 4.096 26 S -0.095 6.095 27 H 0.057 0.943 28 H 0.099 0.901 29 H 0.054 0.946 30 H 0.129 0.871 31 H 0.134 0.866 32 H 0.131 0.869 33 H 0.338 0.662 34 H 0.018 0.982 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.042 0.958 38 H 0.011 0.989 39 H 0.014 0.986 40 H 0.259 0.741 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.100 0.900 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.278 -2.909 23.299 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.093 3.907 4 C -0.236 4.236 5 C -0.062 4.062 6 C -0.230 4.230 7 C -0.003 4.003 8 C -0.177 4.177 9 C 0.008 3.992 10 H 0.071 0.929 11 N -0.286 5.286 12 C -0.067 4.067 13 C -0.140 4.140 14 C -0.015 4.015 15 C -0.554 4.554 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.202 1.202 23 C -0.153 4.153 24 C -0.155 4.155 25 C -0.244 4.244 26 S 0.141 5.859 27 H 0.075 0.925 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.147 0.853 31 H 0.152 0.848 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.036 0.964 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.030 0.970 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.731 -1.987 22.277 24.390 hybrid contribution 0.610 -1.046 0.065 1.213 sum -9.121 -3.033 22.342 24.322 Atomic orbital electron populations 1.23055 0.78434 1.03883 1.01412 1.86097 1.21387 1.27073 1.88607 1.19035 0.92175 0.84084 0.95379 1.21261 0.99901 0.92185 1.10233 1.21223 0.93111 0.97211 0.94671 1.21124 0.95056 0.97368 1.09408 1.19845 0.95557 0.91258 0.93688 1.20452 0.91328 0.98068 1.07817 1.20635 0.90059 0.95263 0.93238 0.92856 1.61360 1.29498 1.36233 1.01495 1.22124 1.00447 0.96716 0.87452 1.21552 0.99146 0.97374 0.95880 1.19052 0.96958 0.96124 0.89350 1.21240 1.42598 1.00037 0.91557 0.92733 1.25028 0.95641 0.95403 0.98469 1.69965 1.48110 1.21857 1.13800 0.86678 0.79349 0.82068 0.80017 1.20306 1.21391 1.20236 1.21369 1.01634 0.96692 0.95585 1.21016 0.97481 0.94391 1.02584 1.23240 0.99634 1.03467 0.98097 1.85852 1.63125 1.15787 1.21164 0.92465 0.88295 0.92722 0.85277 0.84828 0.85139 0.84113 0.96350 0.91948 0.92270 0.93901 0.97041 0.96789 0.93095 0.91025 0.91765 0.89712 0.92478 0.88141 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 9.81 101.05 0.99 1.20 16 2 O -0.32 -3.75 10.49 -19.75 -0.21 -3.96 16 3 C 0.14 1.77 6.68 -39.23 -0.26 1.51 16 4 C -0.22 -2.50 9.04 -39.37 -0.36 -2.85 16 5 C -0.04 -0.51 9.84 -39.38 -0.39 -0.90 16 6 C -0.12 -1.63 5.57 -39.69 -0.22 -1.85 16 7 C 0.00 0.01 4.10 -104.42 -0.43 -0.42 16 8 C -0.16 -2.07 9.59 -39.28 -0.38 -2.45 16 9 C 0.12 1.49 2.59 -68.46 -0.18 1.32 16 10 H 0.05 0.68 7.71 -51.93 -0.40 0.28 16 11 N -0.65 -9.38 2.87 -107.51 -0.31 -9.69 16 12 C 0.06 1.11 5.49 -3.82 -0.02 1.09 16 13 C -0.10 -2.18 5.41 -26.73 -0.14 -2.33 16 14 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 15 C -0.52 -15.14 9.11 -34.44 -0.31 -15.45 16 16 H 0.05 1.55 7.74 -52.49 -0.41 1.15 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.83 13.29 55.43 0.74 -27.09 16 19 Si 0.89 22.29 29.54 -169.99 -5.02 17.26 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 23 C -0.11 -1.14 5.45 -27.60 -0.15 -1.29 16 24 C -0.12 -1.10 4.97 -28.41 -0.14 -1.24 16 25 C -0.10 -0.99 6.18 36.39 0.22 -0.76 16 26 S -0.10 -1.31 19.37 -107.50 -2.08 -3.39 16 27 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 28 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.34 7.65 -51.93 -0.40 -0.06 16 30 H 0.13 1.16 6.27 -52.49 -0.33 0.83 16 31 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 32 H 0.13 1.60 7.97 -52.49 -0.42 1.18 16 33 H 0.34 4.46 6.84 -39.29 -0.27 4.19 16 34 H 0.02 0.33 8.08 -51.93 -0.42 -0.09 16 35 H 0.06 1.24 7.73 -51.93 -0.40 0.84 16 36 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.63 7.77 -51.93 -0.40 0.23 16 43 H 0.08 0.89 5.82 -51.93 -0.30 0.59 16 44 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 0.90 8.14 -51.93 -0.42 0.47 16 46 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 LS Contribution 372.01 15.07 5.61 5.61 Total: -1.00 -32.62 372.01 -10.78 -43.40 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -7.51 Total: 0.27 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -2.00 Total: -22.41 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.43 Total: -36.78 kcal Atomic # 8 Polarization: -3.75 SS G_CDS: -0.21 Total: -3.96 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: -1.31 SS G_CDS: -2.08 Total: -3.39 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.62 -10.78 -43.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187950708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.170 kcal (2) G-P(sol) polarization free energy of solvation -32.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds