Wall clock time and date at job start Tue Mar 31 2020 13:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46811 * 2 1 4 4 C 1.53000 * 109.46962 * 240.00715 * 2 1 3 5 5 C 1.53000 * 109.47177 * 294.07022 * 4 2 1 6 6 H 1.09004 * 109.46746 * 56.79228 * 5 4 2 7 7 O 1.42895 * 109.47213 * 296.79370 * 5 4 2 8 8 C 1.52998 * 109.47514 * 176.78968 * 5 4 2 9 9 N 1.46496 * 109.47351 * 185.00265 * 8 5 4 10 10 C 1.34777 * 120.00249 * 180.02562 * 9 8 5 11 11 O 1.21287 * 119.99601 * 0.02562 * 10 9 8 12 12 C 1.50699 * 120.00359 * 180.02562 * 10 9 8 13 13 C 1.50695 * 109.47156 * 180.02562 * 12 10 9 14 14 C 1.38321 * 119.96357 * 269.71920 * 13 12 10 15 15 C 1.38285 * 120.13723 * 179.76671 * 14 13 12 16 16 C 1.38125 * 120.06660 * 0.51301 * 15 14 13 17 17 C 1.38853 * 119.93261 * 359.74383 * 16 15 14 18 18 O 1.35749 * 120.07113 * 179.97438 * 17 16 15 19 19 C 1.34830 * 116.99756 * 354.58800 * 18 17 16 20 20 H 1.08005 * 120.00069 * 5.07577 * 19 18 17 21 21 C 1.38652 * 119.99931 * 185.06990 * 19 18 17 22 22 N 1.31560 * 120.00262 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 120.00220 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.46874 * 89.99678 * 23 21 19 25 25 H 1.48500 * 109.47134 * 209.99886 * 23 21 19 26 26 H 1.48501 * 109.46766 * 330.00072 * 23 21 19 27 27 C 1.38084 * 119.96796 * 90.00028 * 13 12 10 28 28 H 1.08995 * 109.47634 * 59.99844 * 1 2 3 29 29 H 1.08998 * 109.46734 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46984 * 299.99391 * 1 2 3 31 31 H 1.08995 * 109.47634 * 120.00156 * 2 1 3 32 32 H 1.08997 * 109.47252 * 295.04328 * 3 2 1 33 33 H 1.09000 * 109.46935 * 55.04185 * 3 2 1 34 34 H 1.09002 * 109.47160 * 175.03908 * 3 2 1 35 35 H 1.08996 * 109.47514 * 54.07232 * 4 2 1 36 36 H 1.09001 * 109.47109 * 174.07111 * 4 2 1 37 37 H 0.96700 * 114.00267 * 299.99688 * 7 5 4 38 38 H 1.09003 * 109.47198 * 305.00667 * 8 5 4 39 39 H 1.09007 * 109.46849 * 65.00102 * 8 5 4 40 40 H 0.97001 * 119.99931 * 0.02562 * 9 8 5 41 41 H 1.09004 * 109.46911 * 299.99796 * 12 10 9 42 42 H 1.08996 * 109.47060 * 59.99451 * 12 10 9 43 43 H 1.08000 * 119.93191 * 0.02562 * 14 13 12 44 44 H 1.07997 * 119.96504 * 180.25838 * 15 14 13 45 45 H 1.08001 * 120.03330 * 179.76643 * 16 15 14 46 46 H 0.96998 * 120.00483 * 180.02562 * 22 21 19 47 47 H 1.07996 * 120.02931 * 359.95352 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7211 -1.2493 5 6 1.6552 -2.2002 -1.1772 6 1 0.5747 -2.2895 -1.0652 7 8 2.3020 -2.8065 -0.0565 8 6 2.0946 -2.9048 -2.4623 9 7 1.6217 -4.2912 -2.4453 10 6 1.8933 -5.1086 -3.4819 11 8 2.5298 -4.6965 -4.4285 12 6 1.4064 -6.5347 -3.4647 13 6 1.8403 -7.2290 -4.7298 14 6 1.0203 -7.2116 -5.8436 15 6 1.4171 -7.8434 -7.0079 16 6 2.6296 -8.5031 -7.0585 17 6 3.4527 -8.5269 -5.9405 18 8 4.6446 -9.1748 -5.9871 19 6 4.9205 -9.8690 -7.1095 20 1 4.2453 -9.8252 -7.9513 21 6 6.0711 -10.6392 -7.1831 22 7 6.3406 -11.3162 -8.2785 23 14 7.2388 -10.7155 -5.7270 24 1 6.8446 -11.8352 -4.8347 25 1 8.6242 -10.9351 -6.2145 26 1 7.1756 -9.4369 -4.9744 27 6 3.0536 -7.8868 -4.7742 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.7509 1.9301 -0.9310 33 1 1.6058 1.9814 0.8423 34 1 3.1263 1.4439 0.0889 35 1 1.5926 -0.2722 -2.1361 36 1 3.1248 -0.6301 -1.3040 37 1 3.2675 -2.7641 -0.0893 38 1 1.6717 -2.3871 -3.3233 39 1 3.1825 -2.8927 -2.5295 40 1 1.1130 -4.6209 -1.6880 41 1 1.8286 -7.0524 -2.6034 42 1 0.3185 -6.5463 -3.3982 43 1 0.0700 -6.6999 -5.8051 44 1 0.7765 -7.8245 -7.8771 45 1 2.9373 -8.9996 -7.9670 46 1 7.1454 -11.8552 -8.3299 47 1 3.6917 -7.9032 -3.9030 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000089861821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:30 Heat of formation + Delta-G solvation = -112.718723 kcal Electronic energy + Delta-G solvation = -26065.402161 eV Core-core repulsion = 22213.138538 eV Total energy + Delta-G solvation = -3852.263622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.00916 -39.10921 -38.51910 -36.61186 -35.74699 -34.37247 -32.41295 -32.14139 -30.53250 -29.38726 -27.66295 -27.55306 -25.82536 -25.05482 -22.40291 -21.78119 -21.19257 -20.46524 -20.01881 -17.72571 -17.46659 -16.95383 -16.79431 -16.60024 -15.59845 -15.46044 -15.17929 -14.99373 -14.62531 -14.37169 -14.20293 -13.93350 -13.75639 -13.49748 -13.36752 -13.26992 -12.77207 -12.61209 -12.52653 -12.29682 -12.21841 -12.12900 -11.79014 -11.60803 -11.51687 -11.26625 -11.09833 -10.93499 -10.81051 -10.76312 -10.68099 -10.43815 -10.11980 -9.74789 -9.34075 -9.18351 -8.82481 -8.09405 -7.30596 -6.36343 -4.02908 2.06008 2.33896 2.73949 3.10444 3.25664 3.28484 3.44473 3.93703 4.16947 4.28308 4.34898 4.45098 4.51823 4.67357 4.71068 4.77745 4.90167 4.99080 5.11963 5.13497 5.20981 5.23276 5.27349 5.36365 5.39448 5.42542 5.49762 5.50356 5.61238 5.62843 5.73210 5.74264 5.88806 5.89287 5.96410 6.17002 6.29881 6.30873 6.58083 6.84148 7.15153 7.17520 7.26402 7.36594 7.43307 7.66280 7.86125 8.09618 8.28622 8.99266 9.62661 10.71508 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020026 B = 0.002148 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.834526 B =13035.078314 C =13893.504488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.149 4.149 4 C -0.146 4.146 5 C 0.094 3.906 6 H 0.107 0.893 7 O -0.558 6.558 8 C 0.087 3.913 9 N -0.734 5.734 10 C 0.512 3.488 11 O -0.521 6.521 12 C -0.094 4.094 13 C -0.035 4.035 14 C -0.188 4.188 15 C -0.076 4.076 16 C -0.218 4.218 17 C 0.160 3.840 18 O -0.220 6.220 19 C -0.388 4.388 20 H 0.106 0.894 21 C 0.062 3.938 22 N -0.882 5.882 23 Si 0.905 3.095 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.260 1.260 27 C -0.175 4.175 28 H 0.053 0.947 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.377 0.623 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.402 0.598 41 H 0.100 0.900 42 H 0.099 0.901 43 H 0.104 0.896 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.278 0.722 47 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.431 20.642 17.692 29.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 C -0.206 4.206 4 C -0.184 4.184 5 C 0.035 3.965 6 H 0.125 0.875 7 O -0.363 6.363 8 C -0.037 4.037 9 N -0.388 5.388 10 C 0.299 3.701 11 O -0.395 6.395 12 C -0.133 4.133 13 C -0.035 4.035 14 C -0.207 4.207 15 C -0.094 4.094 16 C -0.237 4.237 17 C 0.108 3.892 18 O -0.125 6.125 19 C -0.463 4.463 20 H 0.123 0.877 21 C -0.141 4.141 22 N -0.520 5.520 23 Si 0.731 3.269 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.184 1.184 27 C -0.194 4.194 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.089 0.911 37 H 0.225 0.775 38 H 0.092 0.908 39 H 0.087 0.913 40 H 0.237 0.763 41 H 0.118 0.882 42 H 0.117 0.883 43 H 0.123 0.877 44 H 0.128 0.872 45 H 0.150 0.850 46 H 0.089 0.911 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.217 20.664 17.200 29.531 hybrid contribution 0.873 -0.110 0.415 0.973 sum -11.344 20.554 17.615 29.350 Atomic orbital electron populations 1.21905 0.95272 1.01856 1.01730 1.21039 0.95919 0.95896 0.98352 1.21857 1.00953 0.96002 1.01799 1.22293 1.01939 0.94985 0.99186 1.22250 0.98393 0.91110 0.84737 0.87538 1.86575 1.24275 1.81052 1.44438 1.22038 1.00325 0.82822 0.98524 1.45925 1.58652 1.11696 1.22562 1.20787 0.79672 0.87745 0.81927 1.90765 1.38403 1.76458 1.33899 1.20581 1.02460 0.91779 0.98521 1.18662 0.94229 0.96982 0.93662 1.20421 1.00412 1.06112 0.93785 1.20738 0.95578 0.96243 0.96888 1.21292 0.96257 1.06273 0.99857 1.19011 0.85374 0.91695 0.93092 1.83569 1.30109 1.58149 1.40671 1.20763 1.09386 1.24759 0.91429 0.87666 1.24455 0.97059 0.94737 0.97802 1.69648 1.26960 1.28859 1.26530 0.86188 0.79169 0.79683 0.81909 1.19923 1.20830 1.18386 1.19942 0.97358 1.05031 0.97066 0.92763 0.92435 0.92710 0.90364 0.92727 0.92657 0.92734 0.90593 0.91145 0.77508 0.90793 0.91307 0.76345 0.88219 0.88303 0.87746 0.87178 0.84989 0.91142 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 8.97 37.16 0.33 -0.45 16 2 C -0.09 -0.50 2.86 -90.62 -0.26 -0.76 16 3 C -0.15 -0.74 9.19 37.16 0.34 -0.40 16 4 C -0.15 -0.77 4.36 -26.73 -0.12 -0.89 16 5 C 0.09 0.57 2.86 -26.73 -0.08 0.50 16 6 H 0.11 0.63 6.45 -51.93 -0.34 0.29 16 7 O -0.56 -3.73 12.65 -35.23 -0.45 -4.18 16 8 C 0.09 0.75 5.31 -4.05 -0.02 0.73 16 9 N -0.73 -7.11 5.50 -60.29 -0.33 -7.44 16 10 C 0.51 7.11 7.82 -10.99 -0.09 7.02 16 11 O -0.52 -9.88 16.03 5.55 0.09 -9.79 16 12 C -0.09 -1.19 5.83 -29.04 -0.17 -1.36 16 13 C -0.03 -0.62 4.37 -104.65 -0.46 -1.07 16 14 C -0.19 -3.35 9.70 -39.53 -0.38 -3.73 16 15 C -0.08 -1.47 10.04 -39.61 -0.40 -1.86 16 16 C -0.22 -4.95 9.17 -39.40 -0.36 -5.31 16 17 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 18 O -0.22 -6.03 8.59 0.05 0.00 -6.03 16 19 C -0.39 -11.25 9.95 30.89 0.31 -10.94 16 20 H 0.11 3.11 5.44 -52.48 -0.29 2.83 16 21 C 0.06 1.79 5.49 -17.52 -0.10 1.69 16 22 N -0.88 -25.97 13.96 55.48 0.77 -25.19 16 23 Si 0.90 22.21 28.62 -169.99 -4.86 17.35 16 24 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.26 -6.44 7.11 56.52 0.40 -6.04 16 27 C -0.17 -3.67 9.65 -39.39 -0.38 -4.05 16 28 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.31 6.53 -51.93 -0.34 -0.03 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.48 7.61 -51.93 -0.40 0.08 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 1.68 9.05 45.56 0.41 2.09 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.40 2.91 8.47 -40.82 -0.35 2.56 16 41 H 0.10 1.07 8.08 -51.93 -0.42 0.65 16 42 H 0.10 0.96 8.08 -51.93 -0.42 0.54 16 43 H 0.10 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.11 1.80 8.06 -52.49 -0.42 1.37 16 45 H 0.13 3.12 5.64 -52.49 -0.30 2.82 16 46 H 0.28 7.57 8.31 -40.82 -0.34 7.23 16 47 H 0.11 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 390.00 15.07 5.88 5.88 Total: -1.00 -34.46 390.00 -7.62 -42.07 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.63 Total: 4.57 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -2.08 Total: -17.25 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.44 Total: -32.63 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.36 Total: -19.99 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.86 Total: 17.35 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.46 -7.62 -42.07 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000089861821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.647 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds