Wall clock time and date at job start Tue Mar 31 2020 14:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99691 * 2 1 4 4 C 1.53001 * 109.46779 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47253 * 64.99706 * 4 3 2 6 6 C 1.46498 * 120.00337 * 288.43276 * 5 4 3 7 7 C 1.53005 * 109.47228 * 274.94958 * 6 5 4 8 8 C 1.53003 * 109.47061 * 177.00690 * 7 6 5 9 9 C 1.52996 * 109.46979 * 297.00373 * 7 6 5 10 10 C 1.34780 * 119.99783 * 108.43145 * 5 4 3 11 11 O 1.21596 * 120.00281 * 178.61765 * 10 5 4 12 12 C 1.47528 * 120.00017 * 358.62450 * 10 5 4 13 13 C 1.39669 * 120.19834 * 328.06751 * 12 10 5 14 14 C 1.37829 * 119.91967 * 179.97438 * 13 12 10 15 15 C 1.38575 * 120.32581 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40087 * 0.02562 * 15 14 13 17 17 C 1.38843 * 120.07012 * 359.95753 * 16 15 14 18 18 O 1.35516 * 120.15586 * 180.02562 * 17 16 15 19 19 C 1.34814 * 117.00147 * 354.47788 * 18 17 16 20 20 H 1.07995 * 120.00522 * 5.07617 * 19 18 17 21 21 C 1.38707 * 119.99807 * 185.06891 * 19 18 17 22 22 N 1.31523 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99702 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47516 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47115 * 120.00480 * 23 21 19 26 26 H 1.48507 * 109.47333 * 240.00050 * 23 21 19 27 27 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47061 * 299.99427 * 1 2 3 29 29 H 1.08997 * 109.47969 * 59.99611 * 1 2 3 30 30 H 1.09003 * 109.46957 * 60.00310 * 3 2 1 31 31 H 1.08998 * 109.47109 * 299.99972 * 3 2 1 32 32 H 1.09003 * 109.46755 * 304.99715 * 4 3 2 33 33 H 1.09001 * 109.47174 * 185.00058 * 4 3 2 34 34 H 1.08997 * 109.47215 * 34.95011 * 6 5 4 35 35 H 1.09009 * 109.47098 * 154.95242 * 6 5 4 36 36 H 1.08995 * 109.46663 * 57.00704 * 7 6 5 37 37 H 1.09002 * 109.46984 * 59.99921 * 8 7 6 38 38 H 1.08993 * 109.46867 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.46764 * 299.99990 * 8 7 6 40 40 H 1.09010 * 109.46906 * 65.16127 * 9 7 6 41 41 H 1.09001 * 109.47139 * 185.15554 * 9 7 6 42 42 H 1.09001 * 109.47593 * 305.16367 * 9 7 6 43 43 H 1.07998 * 120.03711 * 0.27907 * 13 12 10 44 44 H 1.08003 * 119.83634 * 180.02562 * 14 13 12 45 45 H 1.07999 * 119.80073 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.96460 * 179.97438 * 16 15 14 47 47 H 0.96994 * 119.99144 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2526 6 6 3.7283 -0.8597 -1.4912 7 6 4.8512 -1.6851 -0.8597 8 6 4.5546 -3.1748 -1.0440 9 6 6.1793 -1.3420 -1.5373 10 6 4.6082 1.3040 -2.1851 11 8 4.9959 0.7838 -3.2135 12 6 4.8303 2.7447 -1.9580 13 6 3.9095 3.4893 -1.2173 14 6 4.1230 4.8348 -1.0082 15 6 5.2475 5.4542 -1.5299 16 6 6.1655 4.7314 -2.2647 17 6 5.9671 3.3750 -2.4852 18 8 6.8675 2.6636 -3.2059 19 6 7.8751 3.3527 -3.7781 20 1 7.9847 4.4095 -3.5847 21 6 8.7712 2.7042 -4.6151 22 7 8.6375 1.4172 -4.8509 23 14 10.1677 3.6589 -5.4073 24 1 10.0981 5.0806 -4.9841 25 1 11.4671 3.0794 -4.9822 26 1 10.0485 3.5755 -6.8852 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8513 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 2.7747 -1.1425 -1.0455 35 1 3.6980 -1.0484 -2.5644 36 1 4.9161 -1.4564 0.2040 37 1 4.4897 -3.4034 -2.1078 38 1 5.3543 -3.7628 -0.5938 39 1 3.6084 -3.4193 -0.5614 40 1 6.4359 -0.3032 -1.3285 41 1 6.9630 -1.9942 -1.1519 42 1 6.0854 -1.4837 -2.6139 43 1 3.0339 3.0102 -0.8049 44 1 3.4103 5.4092 -0.4350 45 1 5.4061 6.5091 -1.3612 46 1 7.0393 5.2214 -2.6683 47 1 9.2639 0.9640 -5.4365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194187708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:15 Heat of formation + Delta-G solvation = -62.778898 kcal Electronic energy + Delta-G solvation = -28744.199100 eV Core-core repulsion = 24894.101031 eV Total energy + Delta-G solvation = -3850.098069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.11706 -38.57453 -37.70342 -36.47106 -35.69640 -34.13280 -32.33325 -30.58855 -29.72039 -28.86106 -26.65168 -26.62008 -25.83055 -25.28863 -23.11838 -22.33547 -21.57523 -19.91733 -18.91136 -18.13519 -17.23829 -16.73407 -16.23752 -15.94779 -15.57106 -15.14847 -14.70107 -14.50899 -14.34791 -14.13316 -13.93733 -13.81321 -13.59668 -13.05906 -12.90394 -12.60965 -12.47471 -12.11230 -11.94229 -11.88496 -11.77684 -11.64989 -11.53830 -11.32833 -11.12726 -11.03762 -10.87063 -10.75043 -10.55524 -10.44586 -10.41347 -10.22175 -9.71506 -9.53051 -8.88263 -8.80718 -8.20615 -8.04070 -7.31447 -6.44229 -4.04081 1.74745 2.27459 3.11834 3.13115 3.18688 3.49235 3.64920 3.77276 3.93902 4.53929 4.95936 4.99361 5.07177 5.16770 5.18231 5.21723 5.25644 5.27905 5.34748 5.39784 5.46711 5.50992 5.52667 5.62812 5.72441 5.86510 5.91943 5.99723 6.07609 6.09287 6.13236 6.26449 6.37759 6.43372 6.53295 6.54551 6.67059 6.74279 6.91616 7.01160 7.04083 7.07145 7.14568 7.25213 7.31101 7.67806 7.92593 8.07609 8.96295 9.10395 9.66821 10.70126 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.004635 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.994255 B = 6040.114678 C = 7818.146562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.382 6.382 3 C 0.039 3.961 4 C 0.089 3.911 5 N -0.612 5.612 6 C 0.121 3.879 7 C -0.109 4.109 8 C -0.141 4.141 9 C -0.136 4.136 10 C 0.562 3.438 11 O -0.501 6.501 12 C -0.222 4.222 13 C -0.063 4.063 14 C -0.230 4.230 15 C -0.053 4.053 16 C -0.236 4.236 17 C 0.189 3.811 18 O -0.134 6.134 19 C -0.402 4.402 20 H 0.094 0.906 21 C 0.045 3.955 22 N -0.835 5.835 23 Si 0.940 3.060 24 H -0.266 1.266 25 H -0.275 1.275 26 H -0.275 1.275 27 H 0.083 0.917 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.127 0.873 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 -0.760 11.148 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.301 6.301 3 C -0.038 4.038 4 C -0.034 4.034 5 N -0.346 5.346 6 C -0.001 4.001 7 C -0.129 4.129 8 C -0.199 4.199 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.374 6.374 12 C -0.227 4.227 13 C -0.081 4.081 14 C -0.249 4.249 15 C -0.072 4.072 16 C -0.256 4.256 17 C 0.131 3.869 18 O -0.033 6.033 19 C -0.477 4.477 20 H 0.111 0.889 21 C -0.162 4.162 22 N -0.466 5.466 23 Si 0.764 3.236 24 H -0.190 1.190 25 H -0.201 1.201 26 H -0.200 1.200 27 H 0.102 0.898 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.145 0.855 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.716 -1.681 10.330 15.710 hybrid contribution 0.450 0.911 -0.230 1.042 sum -11.266 -0.770 10.100 15.150 Atomic orbital electron populations 1.22732 0.81633 1.02536 0.99809 1.87918 1.19232 1.27661 1.95269 1.23195 0.94941 0.85177 1.00511 1.22211 0.91599 1.01808 0.87799 1.47677 1.59819 1.09478 1.17657 1.21604 0.97671 0.79265 1.01602 1.21475 0.96715 0.94831 0.99843 1.21743 1.00804 0.95582 1.01751 1.21740 0.94975 1.01329 1.01322 1.18230 0.77210 0.86188 0.83186 1.90868 1.47603 1.72683 1.26290 1.18850 0.98593 0.93686 1.11547 1.21303 0.97533 0.94110 0.95186 1.20486 1.00633 0.94735 1.09039 1.20891 0.93292 0.98471 0.94503 1.21161 1.03001 0.94319 1.07080 1.19220 0.88202 0.89829 0.89699 1.84078 1.31336 1.34124 1.53778 1.21484 1.04654 0.94276 1.27317 0.88867 1.25360 0.98597 0.96013 0.96279 1.70117 1.35194 1.08307 1.33013 0.85673 0.79677 0.79183 0.79027 1.19006 1.20065 1.20012 0.89843 0.94298 0.94161 0.92388 0.92539 0.90882 0.85972 0.89334 0.90455 0.91947 0.92648 0.92944 0.93044 0.92589 0.94116 0.91819 0.85519 0.87265 0.87223 0.85099 0.91938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.45 8.09 -35.23 -0.29 -4.74 16 3 C 0.04 0.44 5.26 37.16 0.20 0.63 16 4 C 0.09 1.21 5.42 -4.05 -0.02 1.18 16 5 N -0.61 -10.62 2.31 -174.92 -0.40 -11.02 16 6 C 0.12 1.97 4.88 -4.04 -0.02 1.95 16 7 C -0.11 -1.69 3.14 -90.62 -0.28 -1.97 16 8 C -0.14 -1.82 9.19 37.16 0.34 -1.47 16 9 C -0.14 -2.62 7.95 37.16 0.30 -2.32 16 10 C 0.56 12.45 6.04 -12.47 -0.08 12.38 16 11 O -0.50 -13.46 14.05 -13.39 -0.19 -13.65 16 12 C -0.22 -4.81 5.45 -104.81 -0.57 -5.38 16 13 C -0.06 -1.07 7.37 -39.20 -0.29 -1.36 16 14 C -0.23 -3.67 10.02 -39.61 -0.40 -4.06 16 15 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 16 C -0.24 -5.04 9.16 -39.43 -0.36 -5.40 16 17 C 0.19 4.67 6.63 -38.59 -0.26 4.41 16 18 O -0.13 -3.92 8.31 -17.86 -0.15 -4.07 16 19 C -0.40 -11.32 9.49 30.91 0.29 -11.03 16 20 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 21 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 22 N -0.83 -25.04 13.67 55.48 0.76 -24.28 16 23 Si 0.94 20.60 29.55 -169.99 -5.02 15.57 16 24 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 27 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.67 7.07 -51.93 -0.37 0.30 16 32 H 0.07 0.91 8.05 -51.93 -0.42 0.49 16 33 H 0.12 1.68 4.09 -51.93 -0.21 1.47 16 34 H 0.09 1.28 5.52 -51.93 -0.29 1.00 16 35 H 0.08 1.43 7.30 -51.92 -0.38 1.05 16 36 H 0.06 0.92 8.05 -51.93 -0.42 0.50 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.05 1.24 6.88 -51.92 -0.36 0.89 16 41 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 1.38 7.81 -51.93 -0.41 0.97 16 43 H 0.13 1.74 3.37 -52.49 -0.18 1.57 16 44 H 0.11 1.38 8.06 -52.48 -0.42 0.96 16 45 H 0.11 1.56 8.06 -52.49 -0.42 1.13 16 46 H 0.13 2.77 5.64 -52.48 -0.30 2.47 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 372.37 15.07 5.61 5.61 Total: -1.00 -33.80 372.37 -7.16 -40.96 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.95 Total: 6.85 kcal Atomic # 6 Polarization: -10.70 SS G_CDS: -0.53 Total: -11.23 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: 0.36 Total: -35.31 kcal Atomic # 8 Polarization: -21.84 SS G_CDS: -0.62 Total: -22.46 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.80 -7.16 -40.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194187708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.815 kcal (2) G-P(sol) polarization free energy of solvation -33.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds