Wall clock time and date at job start Tue Mar 31 2020 14:13:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 113.99691 * 2 1 4 4 C 1.53001 * 109.46779 * 180.02562 * 3 2 1 5 5 N 1.46491 * 109.47253 * 64.99706 * 4 3 2 6 6 C 1.46498 * 120.00337 * 288.43276 * 5 4 3 7 7 C 1.53005 * 109.47228 * 274.94958 * 6 5 4 8 8 C 1.53003 * 109.47061 * 177.00690 * 7 6 5 9 9 C 1.52996 * 109.46979 * 297.00373 * 7 6 5 10 10 C 1.34780 * 119.99783 * 108.43145 * 5 4 3 11 11 O 1.21596 * 120.00281 * 178.61765 * 10 5 4 12 12 C 1.47528 * 120.00017 * 358.62450 * 10 5 4 13 13 C 1.39669 * 120.19834 * 328.06751 * 12 10 5 14 14 C 1.37829 * 119.91967 * 179.97438 * 13 12 10 15 15 C 1.38575 * 120.32581 * 0.02562 * 14 13 12 16 16 C 1.38028 * 120.40087 * 0.02562 * 15 14 13 17 17 C 1.38843 * 120.07012 * 359.95753 * 16 15 14 18 18 O 1.35516 * 120.15586 * 180.02562 * 17 16 15 19 19 C 1.34814 * 117.00147 * 354.47788 * 18 17 16 20 20 H 1.07995 * 120.00522 * 5.07617 * 19 18 17 21 21 C 1.38707 * 119.99807 * 185.06891 * 19 18 17 22 22 N 1.31523 * 119.99937 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99702 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47516 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47115 * 120.00480 * 23 21 19 26 26 H 1.48507 * 109.47333 * 240.00050 * 23 21 19 27 27 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.47061 * 299.99427 * 1 2 3 29 29 H 1.08997 * 109.47969 * 59.99611 * 1 2 3 30 30 H 1.09003 * 109.46957 * 60.00310 * 3 2 1 31 31 H 1.08998 * 109.47109 * 299.99972 * 3 2 1 32 32 H 1.09003 * 109.46755 * 304.99715 * 4 3 2 33 33 H 1.09001 * 109.47174 * 185.00058 * 4 3 2 34 34 H 1.08997 * 109.47215 * 34.95011 * 6 5 4 35 35 H 1.09009 * 109.47098 * 154.95242 * 6 5 4 36 36 H 1.08995 * 109.46663 * 57.00704 * 7 6 5 37 37 H 1.09002 * 109.46984 * 59.99921 * 8 7 6 38 38 H 1.08993 * 109.46867 * 180.02562 * 8 7 6 39 39 H 1.08998 * 109.46764 * 299.99990 * 8 7 6 40 40 H 1.09010 * 109.46906 * 65.16127 * 9 7 6 41 41 H 1.09001 * 109.47139 * 185.15554 * 9 7 6 42 42 H 1.09001 * 109.47593 * 305.16367 * 9 7 6 43 43 H 1.07998 * 120.03711 * 0.27907 * 13 12 10 44 44 H 1.08003 * 119.83634 * 180.02562 * 14 13 12 45 45 H 1.07999 * 119.80073 * 179.97438 * 15 14 13 46 46 H 1.08003 * 119.96460 * 179.97438 * 16 15 14 47 47 H 0.96994 * 119.99144 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5644 -1.2526 6 6 3.7283 -0.8597 -1.4912 7 6 4.8512 -1.6851 -0.8597 8 6 4.5546 -3.1748 -1.0440 9 6 6.1793 -1.3420 -1.5373 10 6 4.6082 1.3040 -2.1851 11 8 4.9959 0.7838 -3.2135 12 6 4.8303 2.7447 -1.9580 13 6 3.9095 3.4893 -1.2173 14 6 4.1230 4.8348 -1.0082 15 6 5.2475 5.4542 -1.5299 16 6 6.1655 4.7314 -2.2647 17 6 5.9671 3.3750 -2.4852 18 8 6.8675 2.6636 -3.2059 19 6 7.8751 3.3527 -3.7781 20 1 7.9847 4.4095 -3.5847 21 6 8.7712 2.7042 -4.6151 22 7 8.6375 1.4172 -4.8509 23 14 10.1677 3.6589 -5.4073 24 1 10.0981 5.0806 -4.9841 25 1 11.4671 3.0794 -4.9822 26 1 10.0485 3.5755 -6.8852 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3635 0.5139 -0.8899 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.8513 0.5683 0.8410 33 1 3.9785 2.1766 0.0889 34 1 2.7747 -1.1425 -1.0455 35 1 3.6980 -1.0484 -2.5644 36 1 4.9161 -1.4564 0.2040 37 1 4.4897 -3.4034 -2.1078 38 1 5.3543 -3.7628 -0.5938 39 1 3.6084 -3.4193 -0.5614 40 1 6.4359 -0.3032 -1.3285 41 1 6.9630 -1.9942 -1.1519 42 1 6.0854 -1.4837 -2.6139 43 1 3.0339 3.0102 -0.8049 44 1 3.4103 5.4092 -0.4350 45 1 5.4061 6.5091 -1.3612 46 1 7.0393 5.2214 -2.6683 47 1 9.2639 0.9640 -5.4365 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194187708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:13:14 Heat of formation + Delta-G solvation = -84.822166 kcal Electronic energy + Delta-G solvation = -28745.154968 eV Core-core repulsion = 24894.101031 eV Total energy + Delta-G solvation = -3851.053937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67344 -40.17160 -38.77199 -38.13460 -37.19019 -35.48729 -34.32380 -32.09781 -31.01439 -30.35054 -28.10421 -27.74018 -27.23383 -26.87668 -24.38224 -23.68822 -23.18974 -21.35917 -20.36478 -19.94141 -18.80129 -18.11495 -17.54746 -17.14834 -16.83900 -16.40607 -16.30128 -16.01122 -15.79076 -15.55632 -15.35907 -15.28867 -15.18804 -14.54717 -14.44549 -14.12060 -13.85752 -13.58382 -13.36310 -13.20611 -13.00682 -12.96853 -12.84542 -12.74143 -12.58906 -12.49721 -12.17573 -12.11637 -12.06543 -11.92139 -11.85178 -11.57564 -11.38065 -10.84154 -10.57251 -10.49132 -9.76899 -9.47232 -9.02576 -8.45282 -6.15862 0.17134 0.69623 1.30988 1.41394 1.50659 1.99423 2.14517 2.20171 2.83625 2.86517 3.16942 3.45558 3.71635 3.93188 4.00048 4.01937 4.12835 4.13828 4.22723 4.28119 4.43092 4.47501 4.57667 4.57728 4.60623 4.64622 4.68183 4.72374 4.74492 4.90526 4.93480 4.95797 4.98349 5.03689 5.06619 5.11302 5.15012 5.19146 5.36889 5.45003 5.48614 5.58891 5.69160 5.79258 5.96018 6.16242 6.25539 6.56793 6.94776 7.46588 7.79514 8.75701 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013155 B = 0.004635 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.994255 B = 6040.114678 C = 7818.146562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.403 6.403 3 C 0.044 3.956 4 C 0.080 3.920 5 N -0.602 5.602 6 C 0.124 3.876 7 C -0.101 4.101 8 C -0.135 4.135 9 C -0.125 4.125 10 C 0.553 3.447 11 O -0.567 6.567 12 C -0.240 4.240 13 C -0.054 4.054 14 C -0.196 4.196 15 C -0.043 4.043 16 C -0.254 4.254 17 C 0.148 3.852 18 O -0.199 6.199 19 C -0.423 4.423 20 H 0.106 0.894 21 C -0.022 4.022 22 N -0.906 5.906 23 Si 1.020 2.980 24 H -0.245 1.245 25 H -0.268 1.268 26 H -0.271 1.271 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.039 0.961 30 H 0.098 0.902 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.122 0.878 34 H 0.118 0.882 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.064 0.936 39 H 0.079 0.921 40 H 0.015 0.985 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.166 0.834 44 H 0.168 0.832 45 H 0.155 0.845 46 H 0.122 0.878 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.378 1.558 14.925 21.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.323 6.323 3 C -0.033 4.033 4 C -0.041 4.041 5 N -0.335 5.335 6 C 0.002 3.998 7 C -0.120 4.120 8 C -0.192 4.192 9 C -0.183 4.183 10 C 0.344 3.656 11 O -0.446 6.446 12 C -0.244 4.244 13 C -0.072 4.072 14 C -0.214 4.214 15 C -0.061 4.061 16 C -0.274 4.274 17 C 0.094 3.906 18 O -0.102 6.102 19 C -0.499 4.499 20 H 0.124 0.876 21 C -0.221 4.221 22 N -0.543 5.543 23 Si 0.839 3.161 24 H -0.168 1.168 25 H -0.193 1.193 26 H -0.196 1.196 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.116 0.884 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.043 0.957 43 H 0.183 0.817 44 H 0.185 0.815 45 H 0.172 0.828 46 H 0.140 0.860 47 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.947 0.681 14.207 20.633 hybrid contribution 1.036 0.315 -1.083 1.532 sum -13.911 0.996 13.124 19.150 Atomic orbital electron populations 1.22900 0.79824 1.03634 1.00702 1.87843 1.21121 1.27859 1.95473 1.23113 0.92552 0.85576 1.02075 1.22512 0.93883 1.01735 0.85996 1.47729 1.58066 1.09706 1.17954 1.21682 0.99256 0.78912 0.99992 1.21449 0.93801 0.96785 0.99968 1.21699 1.02701 0.93232 1.01606 1.21618 0.98213 0.99081 0.99365 1.18566 0.76956 0.86956 0.83171 1.90838 1.50479 1.73879 1.29368 1.19264 0.98889 0.94008 1.12259 1.21777 0.97271 0.94684 0.93437 1.21216 1.00009 0.94126 1.06063 1.21428 0.92162 1.00372 0.92108 1.21305 1.04245 0.93279 1.08540 1.19998 0.88973 0.91657 0.89992 1.84083 1.33288 1.35782 1.57046 1.22011 1.05113 0.95012 1.27793 0.87639 1.26716 1.01605 0.97011 0.96743 1.70315 1.37459 1.10818 1.35671 0.84524 0.75541 0.78368 0.77656 1.16799 1.19299 1.19609 0.88835 0.92307 0.94278 0.88406 0.93127 0.89176 0.86087 0.86422 0.93802 0.90082 0.93713 0.91733 0.90247 0.96620 0.92631 0.95657 0.81678 0.81479 0.82770 0.86006 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -7.84 8.09 -148.98 -1.21 -9.04 16 3 C 0.04 0.79 5.26 71.98 0.38 1.16 16 4 C 0.08 1.95 5.42 86.38 0.47 2.42 16 5 N -0.60 -21.11 2.31 -825.57 -1.90 -23.01 16 6 C 0.12 4.08 4.88 86.38 0.42 4.50 16 7 C -0.10 -3.13 3.14 -10.79 -0.03 -3.17 16 8 C -0.13 -3.32 9.19 71.98 0.66 -2.66 16 9 C -0.13 -5.24 7.95 71.98 0.57 -4.67 16 10 C 0.55 26.03 6.04 86.69 0.52 26.55 16 11 O -0.57 -33.76 14.05 13.84 0.19 -33.56 16 12 C -0.24 -10.62 5.45 -19.99 -0.11 -10.73 16 13 C -0.05 -1.65 7.37 22.52 0.17 -1.49 16 14 C -0.20 -5.11 10.02 22.25 0.22 -4.88 16 15 C -0.04 -1.31 10.03 22.30 0.22 -1.09 16 16 C -0.25 -10.90 9.16 22.36 0.20 -10.70 16 17 C 0.15 7.71 6.63 22.91 0.15 7.86 16 18 O -0.20 -12.75 8.31 -2.15 -0.02 -12.77 16 19 C -0.42 -25.86 9.49 67.93 0.64 -25.22 16 20 H 0.11 5.80 5.21 -2.91 -0.02 5.78 16 21 C -0.02 -1.31 5.49 84.85 0.47 -0.85 16 22 N -0.91 -59.90 13.67 21.62 0.30 -59.60 16 23 Si 1.02 44.92 29.55 68.60 2.03 46.95 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 26 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 27 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 29 H 0.04 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.05 0.98 7.07 -2.39 -0.02 0.96 16 32 H 0.09 1.93 8.05 -2.39 -0.02 1.91 16 33 H 0.12 2.93 4.09 -2.39 -0.01 2.92 16 34 H 0.12 3.21 5.52 -2.39 -0.01 3.20 16 35 H 0.04 1.75 7.30 -2.38 -0.02 1.73 16 36 H 0.08 2.25 8.05 -2.39 -0.02 2.24 16 37 H 0.04 1.19 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.01 0.73 6.88 -2.38 -0.02 0.72 16 41 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.02 1.21 7.81 -2.39 -0.02 1.19 16 43 H 0.17 3.76 3.37 -2.91 -0.01 3.75 16 44 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 45 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 46 H 0.12 5.32 5.64 -2.91 -0.02 5.30 16 47 H 0.27 16.33 8.31 -92.71 -0.77 15.56 16 Total: -1.00 -88.84 372.37 6.58 -82.27 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: 0.98 Total: 30.13 kcal Atomic # 6 Polarization: -27.57 SS G_CDS: 6.21 Total: -21.36 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -1.61 Total: -82.61 kcal Atomic # 8 Polarization: -54.34 SS G_CDS: -1.03 Total: -55.37 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -88.84 6.58 -82.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194187708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.554 kcal (2) G-P(sol) polarization free energy of solvation -88.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds