Wall clock time and date at job start Tue Mar 31 2020 12:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47422 * 2 1 4 4 C 1.52998 * 109.47257 * 120.00274 * 2 1 3 5 5 C 1.53006 * 109.47414 * 64.99622 * 4 2 1 6 6 C 1.53000 * 109.47239 * 180.02562 * 5 4 2 7 7 H 1.09003 * 109.46716 * 304.99987 * 6 5 4 8 8 C 1.52995 * 109.46885 * 185.00547 * 6 5 4 9 9 O 1.42902 * 109.46769 * 304.99390 * 8 6 5 10 10 N 1.46491 * 109.47400 * 64.99478 * 6 5 4 11 11 C 1.34774 * 120.00313 * 204.99992 * 10 6 5 12 12 O 1.21593 * 120.00024 * 359.97438 * 11 10 6 13 13 C 1.47538 * 120.00187 * 179.73222 * 11 10 6 14 14 C 1.39669 * 120.19356 * 0.27136 * 13 11 10 15 15 C 1.37826 * 119.91351 * 180.02562 * 14 13 11 16 16 C 1.38569 * 120.32964 * 0.02562 * 15 14 13 17 17 C 1.38034 * 120.39900 * 359.97438 * 16 15 14 18 18 C 1.38829 * 120.06869 * 359.67653 * 17 16 15 19 19 O 1.35527 * 120.16111 * 180.29655 * 18 17 16 20 20 C 1.34811 * 116.99787 * 354.40394 * 19 18 17 21 21 H 1.07999 * 120.00394 * 5.06076 * 20 19 18 22 22 C 1.38697 * 120.00146 * 185.05926 * 20 19 18 23 23 N 1.31530 * 119.99658 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 120.00416 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47208 * 0.02562 * 24 22 20 26 26 H 1.48503 * 109.47193 * 120.00318 * 24 22 20 27 27 H 1.48499 * 109.47587 * 240.00406 * 24 22 20 28 28 H 1.08997 * 109.47017 * 59.99665 * 1 2 3 29 29 H 1.09000 * 109.46904 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46925 * 299.99861 * 1 2 3 31 31 H 1.09004 * 109.47072 * 239.99438 * 2 1 3 32 32 H 1.08998 * 109.47200 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47071 * 299.99861 * 3 2 1 34 34 H 1.08998 * 109.46956 * 60.00158 * 3 2 1 35 35 H 1.09006 * 109.47070 * 304.99580 * 4 2 1 36 36 H 1.09001 * 109.47575 * 184.99785 * 4 2 1 37 37 H 1.08997 * 109.47083 * 60.00203 * 5 4 2 38 38 H 1.09001 * 109.46882 * 300.00587 * 5 4 2 39 39 H 1.08989 * 109.47671 * 64.99321 * 8 6 5 40 40 H 1.09002 * 109.47244 * 184.99976 * 8 6 5 41 41 H 0.96700 * 114.00056 * 180.02562 * 9 8 6 42 42 H 0.97000 * 119.99798 * 25.00738 * 10 6 5 43 43 H 1.07996 * 120.04238 * 0.02670 * 14 13 11 44 44 H 1.07998 * 119.83577 * 179.97438 * 15 14 13 45 45 H 1.07995 * 119.80344 * 179.97438 * 16 15 14 46 46 H 1.07994 * 119.96260 * 179.97438 * 17 16 15 47 47 H 0.96997 * 119.99354 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6352 -2.1956 1.1880 6 6 2.1447 -2.9167 2.4375 7 1 3.2200 -2.7647 2.5315 8 6 1.8497 -4.4132 2.3185 9 8 0.4542 -4.6059 2.0787 10 7 1.4702 -2.3784 3.6212 11 6 2.0620 -2.4595 4.8293 12 8 3.1557 -2.9799 4.9369 13 6 1.3853 -1.9120 6.0206 14 6 0.1287 -1.3139 5.9018 15 6 -0.4980 -0.8039 7.0184 16 6 0.1125 -0.8807 8.2599 17 6 1.3541 -1.4690 8.3925 18 6 1.9972 -1.9946 7.2800 19 8 3.2137 -2.5779 7.4090 20 6 3.7977 -2.5135 8.6224 21 1 3.2625 -2.0860 9.4573 22 6 5.0859 -2.9964 8.7985 23 7 5.7379 -3.5166 7.7815 24 14 5.8955 -2.9065 10.4794 25 1 4.9585 -2.2815 11.4473 26 1 6.2385 -4.2768 10.9376 27 1 7.1328 -2.0902 10.3901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9562 0.8900 35 1 1.6055 -0.2618 2.1370 36 1 3.1264 -0.6444 1.2951 37 1 2.0698 -2.6551 0.3003 38 1 0.5489 -2.2724 1.1420 39 1 2.4217 -4.8317 1.4906 40 1 2.1316 -4.9139 3.2448 41 1 0.1942 -5.5333 1.9926 42 1 0.5975 -1.9636 3.5355 43 1 -0.3512 -1.2511 4.9363 44 1 -1.4695 -0.3413 6.9250 45 1 -0.3861 -0.4780 9.1291 46 1 1.8237 -1.5247 9.3634 47 1 6.6390 -3.8540 7.9046 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862777089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:06 Heat of formation + Delta-G solvation = -106.980385 kcal Electronic energy + Delta-G solvation = -27676.379309 eV Core-core repulsion = 23824.364520 eV Total energy + Delta-G solvation = -3852.014789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.70213 -38.58662 -37.12661 -36.44084 -36.26548 -34.14885 -32.31913 -31.48232 -29.90497 -28.88698 -27.90113 -27.26079 -25.36225 -23.87063 -23.07539 -21.58170 -20.50682 -19.98602 -19.80113 -18.00229 -17.57839 -17.24321 -16.09107 -15.81300 -15.31566 -14.85501 -14.64016 -14.42592 -14.17358 -14.12594 -13.84137 -13.78614 -13.65188 -13.40607 -13.05032 -12.86176 -12.53225 -12.40335 -12.35193 -12.01091 -11.70173 -11.56223 -11.41177 -11.30227 -11.20681 -11.08001 -10.89788 -10.74562 -10.66308 -10.48424 -10.43715 -10.42218 -9.87198 -9.53158 -8.86508 -8.78156 -8.45826 -8.22727 -7.27807 -6.42758 -4.02437 1.75748 2.35145 3.12492 3.13438 3.19019 3.75810 3.78872 3.94932 4.42487 4.58494 4.68535 4.81769 4.84564 5.09331 5.15843 5.20499 5.23308 5.31971 5.48264 5.50431 5.51627 5.57509 5.62790 5.65659 5.71939 5.75831 5.80289 5.82758 5.93368 6.02322 6.03491 6.07948 6.15841 6.18495 6.19511 6.38633 6.44143 6.60127 6.73036 6.94996 7.07675 7.10141 7.27222 7.32265 7.68160 7.72764 7.94719 8.23140 8.97374 9.16844 9.70505 10.71271 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012738 B = 0.003483 C = 0.003266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.651209 B = 8036.451123 C = 8572.113319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.096 4.096 3 C -0.148 4.148 4 C -0.118 4.118 5 C -0.120 4.120 6 C 0.153 3.847 7 H 0.097 0.903 8 C 0.062 3.938 9 O -0.569 6.569 10 N -0.729 5.729 11 C 0.555 3.445 12 O -0.506 6.506 13 C -0.225 4.225 14 C -0.037 4.037 15 C -0.231 4.231 16 C -0.051 4.051 17 C -0.239 4.239 18 C 0.190 3.810 19 O -0.125 6.125 20 C -0.403 4.403 21 H 0.094 0.906 22 C 0.044 3.956 23 N -0.834 5.834 24 Si 0.940 3.060 25 H -0.266 1.266 26 H -0.275 1.275 27 H -0.275 1.275 28 H 0.049 0.951 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.050 0.950 34 H 0.055 0.945 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.047 0.953 40 H 0.055 0.945 41 H 0.373 0.627 42 H 0.393 0.607 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.131 0.869 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.329 3.986 -12.558 16.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.205 4.205 4 C -0.155 4.155 5 C -0.157 4.157 6 C 0.048 3.952 7 H 0.115 0.885 8 C -0.017 4.017 9 O -0.374 6.374 10 N -0.384 5.384 11 C 0.344 3.656 12 O -0.381 6.381 13 C -0.230 4.230 14 C -0.056 4.056 15 C -0.250 4.250 16 C -0.070 4.070 17 C -0.258 4.258 18 C 0.130 3.870 19 O -0.023 6.023 20 C -0.479 4.479 21 H 0.111 0.889 22 C -0.163 4.163 23 N -0.465 5.465 24 Si 0.764 3.236 25 H -0.190 1.190 26 H -0.201 1.201 27 H -0.200 1.200 28 H 0.068 0.932 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.219 0.781 42 H 0.228 0.772 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.149 0.851 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.059 4.004 -12.648 16.064 hybrid contribution -0.078 -0.386 0.877 0.961 sum -9.137 3.618 -11.771 15.334 Atomic orbital electron populations 1.21899 0.95382 1.01911 1.01448 1.21112 0.95844 0.96053 0.98430 1.21846 1.00986 0.96176 1.01537 1.21692 1.01113 0.94942 0.97767 1.21801 1.02362 0.94999 0.96576 1.20914 0.98438 0.90567 0.85307 0.88507 1.22702 0.81748 0.97543 0.99703 1.86440 1.24812 1.30749 1.95398 1.45838 1.22639 1.63336 1.06543 1.18248 0.85433 0.79339 0.82565 1.90935 1.19398 1.42666 1.85065 1.18883 0.98235 1.14336 0.91576 1.20773 0.92586 0.94538 0.97704 1.20462 1.01431 1.10015 0.93057 1.20891 0.93954 0.95437 0.96716 1.21156 0.97573 1.07812 0.99288 1.19284 0.86832 0.89079 0.91786 1.84177 1.24283 1.60639 1.33228 1.21536 0.98345 1.42644 0.85376 0.88889 1.25372 0.95458 0.96012 0.99472 1.70145 1.11789 1.34477 1.30105 0.85672 0.79311 0.78427 0.80141 1.18992 1.20063 1.20033 0.93206 0.92292 0.92658 0.91534 0.92763 0.93049 0.92622 0.91486 0.91917 0.91170 0.90451 0.93445 0.92696 0.78057 0.77208 0.87047 0.87324 0.87242 0.85131 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 8.95 37.16 0.33 -0.96 16 2 C -0.10 -0.90 2.92 -90.62 -0.26 -1.16 16 3 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 4 C -0.12 -1.31 4.57 -26.73 -0.12 -1.43 16 5 C -0.12 -1.34 4.23 -26.73 -0.11 -1.46 16 6 C 0.15 2.24 2.37 -67.94 -0.16 2.08 16 7 H 0.10 1.62 7.58 -51.93 -0.39 1.22 16 8 C 0.06 0.85 6.85 37.16 0.25 1.11 16 9 O -0.57 -6.98 12.83 -35.23 -0.45 -7.43 16 10 N -0.73 -12.03 4.43 -54.85 -0.24 -12.27 16 11 C 0.55 12.23 7.73 -12.47 -0.10 12.13 16 12 O -0.51 -13.72 14.83 -16.57 -0.25 -13.96 16 13 C -0.23 -4.97 5.89 -104.81 -0.62 -5.59 16 14 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -3.87 10.02 -39.61 -0.40 -4.27 16 16 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 17 C -0.24 -5.21 9.16 -39.44 -0.36 -5.57 16 18 C 0.19 4.76 6.66 -38.60 -0.26 4.50 16 19 O -0.12 -3.71 7.84 -21.07 -0.17 -3.87 16 20 C -0.40 -11.48 9.49 30.90 0.29 -11.19 16 21 H 0.09 2.42 5.21 -52.49 -0.27 2.14 16 22 C 0.04 1.24 5.49 -17.51 -0.10 1.14 16 23 N -0.83 -25.17 13.67 55.48 0.76 -24.41 16 24 Si 0.94 20.64 29.55 -169.99 -5.02 15.62 16 25 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.51 6.57 -51.93 -0.34 0.17 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.82 7.75 -51.93 -0.40 0.41 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.86 6.15 -51.93 -0.32 0.54 16 39 H 0.05 0.55 8.14 -51.94 -0.42 0.12 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.37 3.07 9.12 45.56 0.42 3.49 16 42 H 0.39 5.61 6.63 -40.82 -0.27 5.33 16 43 H 0.11 1.57 6.40 -52.49 -0.34 1.23 16 44 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 384.43 15.07 5.79 5.79 Total: -1.00 -34.67 384.43 -8.04 -42.71 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -6.43 Total: 11.84 kcal Atomic # 6 Polarization: -11.98 SS G_CDS: -2.03 Total: -14.01 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.52 Total: -36.68 kcal Atomic # 8 Polarization: -24.41 SS G_CDS: -0.86 Total: -25.27 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.67 -8.04 -42.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862777089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.272 kcal (2) G-P(sol) polarization free energy of solvation -34.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds