Wall clock time and date at job start Tue Mar 31 2020 12:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47240 * 2 1 4 4 C 1.53000 * 109.47047 * 120.00387 * 2 1 3 5 5 C 1.53004 * 109.46965 * 175.00100 * 4 2 1 6 6 C 1.53000 * 109.46965 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.47447 * 54.99574 * 6 5 4 8 8 C 1.53002 * 109.46972 * 175.00109 * 6 5 4 9 9 O 1.42893 * 109.47352 * 54.99530 * 8 6 5 10 10 N 1.46496 * 109.46981 * 294.99704 * 6 5 4 11 11 C 1.34774 * 120.00242 * 154.99826 * 10 6 5 12 12 O 1.21590 * 119.99686 * 0.02562 * 11 10 6 13 13 C 1.47535 * 120.00235 * 179.97438 * 11 10 6 14 14 C 1.39666 * 120.19977 * 359.97438 * 13 11 10 15 15 C 1.37826 * 119.92249 * 180.02562 * 14 13 11 16 16 C 1.38571 * 120.32203 * 359.97438 * 15 14 13 17 17 C 1.38025 * 120.40291 * 0.02562 * 16 15 14 18 18 C 1.38830 * 120.07198 * 359.97438 * 17 16 15 19 19 O 1.35518 * 120.16239 * 179.97438 * 18 17 16 20 20 C 1.34820 * 117.00070 * 354.39490 * 19 18 17 21 21 H 1.07997 * 119.99738 * 5.05806 * 20 19 18 22 22 C 1.38700 * 120.00183 * 185.04813 * 20 19 18 23 23 N 1.31520 * 119.99867 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 119.99727 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47267 * 90.00148 * 24 22 20 26 26 H 1.48506 * 109.46696 * 209.99373 * 24 22 20 27 27 H 1.48498 * 109.47301 * 329.99404 * 24 22 20 28 28 H 1.08998 * 109.46877 * 299.99784 * 1 2 3 29 29 H 1.09005 * 109.46835 * 60.00036 * 1 2 3 30 30 H 1.09002 * 109.47060 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46877 * 240.00216 * 2 1 3 32 32 H 1.09000 * 109.46736 * 59.99827 * 3 2 1 33 33 H 1.08994 * 109.46813 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47006 * 300.00502 * 3 2 1 35 35 H 1.08996 * 109.47379 * 55.00065 * 4 2 1 36 36 H 1.08997 * 109.46702 * 294.99844 * 4 2 1 37 37 H 1.08996 * 109.47101 * 59.99795 * 5 4 2 38 38 H 1.09006 * 109.47153 * 299.99686 * 5 4 2 39 39 H 1.08999 * 109.46780 * 174.99730 * 8 6 5 40 40 H 1.09001 * 109.46858 * 294.99403 * 8 6 5 41 41 H 0.96697 * 114.00073 * 179.97438 * 9 8 6 42 42 H 0.97004 * 120.00291 * 335.00247 * 10 6 5 43 43 H 1.08003 * 120.03699 * 0.03770 * 14 13 11 44 44 H 1.08001 * 119.83995 * 180.02562 * 15 14 13 45 45 H 1.08003 * 119.80208 * 180.27644 * 16 15 14 46 46 H 1.08003 * 119.96586 * 180.02562 * 17 16 15 47 47 H 0.97001 * 119.99390 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5649 -0.8311 1.1879 6 6 4.0748 -1.5530 2.4368 7 1 3.5731 -2.5162 2.5301 8 6 5.5842 -1.7735 2.3178 9 8 6.2311 -0.5220 2.0790 10 7 3.7922 -0.7385 3.6212 11 6 3.6712 -1.3244 4.8289 12 8 3.7971 -2.5291 4.9354 13 6 3.3872 -0.5041 6.0217 14 6 3.2434 0.8802 5.9044 15 6 2.9786 1.6411 7.0227 16 6 2.8535 1.0395 8.2647 17 6 2.9930 -0.3274 8.3960 18 6 3.2599 -1.1097 7.2806 19 8 3.3978 -2.4519 7.4075 20 6 3.3801 -2.9534 8.6588 21 1 3.1786 -2.3042 9.4979 22 6 3.6206 -4.3032 8.8684 23 7 3.6028 -4.7925 10.0890 24 14 3.9696 -5.4261 7.4169 25 1 5.4314 -5.4603 7.1578 26 1 3.4894 -6.7972 7.7252 27 1 3.2654 -4.9137 6.2141 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6054 -1.7199 1.2951 36 1 1.7516 -0.1584 2.1369 37 1 3.9994 0.1674 1.1420 38 1 3.8533 -1.3940 0.3001 39 1 5.9621 -2.2070 3.2437 40 1 5.7880 -2.4518 1.4893 41 1 7.1921 -0.5860 1.9930 42 1 3.6921 0.2226 3.5363 43 1 3.3394 1.3538 4.9385 44 1 2.8672 2.7114 6.9303 45 1 2.6415 1.6433 9.1347 46 1 2.8937 -0.7889 9.3673 47 1 3.7714 -5.7365 10.2356 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000862777090.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:12 Heat of formation + Delta-G solvation = -107.611200 kcal Electronic energy + Delta-G solvation = -27803.902496 eV Core-core repulsion = 23951.860352 eV Total energy + Delta-G solvation = -3852.042143 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.90677 -38.77073 -37.29747 -36.56602 -36.44945 -34.31483 -32.44152 -31.64198 -30.03947 -29.17726 -28.03433 -27.33500 -25.29886 -23.99548 -23.24435 -21.55719 -20.60953 -20.08589 -20.01026 -17.89729 -17.82188 -17.41081 -16.33058 -15.98147 -15.41635 -15.02490 -14.79165 -14.39567 -14.31343 -14.19759 -13.95613 -13.82071 -13.67684 -13.59028 -13.17540 -13.00696 -12.63278 -12.43236 -12.33607 -12.16539 -12.11654 -11.66765 -11.52205 -11.38060 -11.31762 -11.23770 -10.81690 -10.75846 -10.71532 -10.58904 -10.53720 -10.04722 -9.99743 -9.59596 -9.01257 -8.88440 -8.66673 -8.34991 -7.45879 -6.46284 -4.11178 1.60339 2.21202 3.31217 3.37182 3.57473 3.59807 3.66059 4.29764 4.35697 4.47629 4.55303 4.72972 4.75494 4.76065 5.04665 5.09162 5.12430 5.20192 5.34659 5.36570 5.42549 5.44326 5.53777 5.54894 5.62881 5.66617 5.68730 5.72942 5.82320 5.90329 5.92622 5.98149 6.06267 6.07358 6.08892 6.28537 6.32747 6.40558 6.57830 6.84459 6.89586 7.03715 7.16834 7.50018 7.56867 7.69595 7.96092 8.03490 8.88212 8.92985 9.53319 10.59035 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011915 B = 0.003959 C = 0.003520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.319971 B = 7070.800982 C = 7952.831611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.118 4.118 5 C -0.120 4.120 6 C 0.152 3.848 7 H 0.097 0.903 8 C 0.062 3.938 9 O -0.569 6.569 10 N -0.726 5.726 11 C 0.561 3.439 12 O -0.523 6.523 13 C -0.225 4.225 14 C -0.039 4.039 15 C -0.221 4.221 16 C -0.051 4.051 17 C -0.228 4.228 18 C 0.201 3.799 19 O -0.166 6.166 20 C -0.396 4.396 21 H 0.108 0.892 22 C 0.071 3.929 23 N -0.871 5.871 24 Si 0.901 3.099 25 H -0.275 1.275 26 H -0.287 1.287 27 H -0.238 1.238 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.048 0.952 41 H 0.375 0.625 42 H 0.396 0.604 43 H 0.114 0.886 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.138 0.862 47 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.365 11.435 -18.467 21.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.207 4.207 4 C -0.155 4.155 5 C -0.158 4.158 6 C 0.046 3.954 7 H 0.115 0.885 8 C -0.017 4.017 9 O -0.373 6.373 10 N -0.380 5.380 11 C 0.351 3.649 12 O -0.400 6.400 13 C -0.230 4.230 14 C -0.058 4.058 15 C -0.240 4.240 16 C -0.070 4.070 17 C -0.247 4.247 18 C 0.144 3.856 19 O -0.066 6.066 20 C -0.471 4.471 21 H 0.125 0.875 22 C -0.134 4.134 23 N -0.507 5.507 24 Si 0.725 3.275 25 H -0.200 1.200 26 H -0.213 1.213 27 H -0.161 1.161 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.221 0.779 42 H 0.231 0.769 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.155 0.845 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.854 10.323 -18.366 21.085 hybrid contribution 0.735 -0.264 -0.263 0.824 sum -0.119 10.059 -18.629 21.171 Atomic orbital electron populations 1.21849 0.95424 1.01689 1.01602 1.21112 0.95559 0.96402 0.98369 1.21901 1.01303 0.95948 1.01518 1.21692 0.95150 1.00815 0.97858 1.21808 0.95560 1.01932 0.96487 1.20957 0.92696 0.96401 0.85315 0.88507 1.22692 0.93910 0.85413 0.99705 1.86438 1.24064 1.31439 1.95400 1.45834 1.74988 1.10673 1.06524 1.18212 0.76387 0.87633 0.82626 1.90841 1.49567 1.14170 1.85393 1.18878 1.19209 0.93241 0.91684 1.20774 0.95529 0.91652 0.97860 1.20540 1.11622 0.98934 0.92915 1.20961 0.95045 0.94105 0.96857 1.21282 1.09802 0.94010 0.99611 1.19029 0.90712 0.83906 0.91969 1.83781 1.75961 1.16019 1.30884 1.20928 1.49739 0.94859 0.81606 0.87487 1.24488 0.94844 0.96494 0.97565 1.69643 1.45676 1.15330 1.20025 0.86195 0.79825 0.78089 0.83349 1.20038 1.21299 1.16108 0.92607 0.92988 0.92777 0.91511 0.92644 0.92293 0.93137 0.91951 0.91487 0.90328 0.91075 0.92780 0.93355 0.77915 0.76930 0.86844 0.87040 0.86874 0.84470 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.10 -0.81 2.92 -90.62 -0.26 -1.08 16 3 C -0.15 -1.19 8.95 37.16 0.33 -0.85 16 4 C -0.12 -1.18 4.57 -26.73 -0.12 -1.30 16 5 C -0.12 -1.21 4.23 -26.73 -0.11 -1.32 16 6 C 0.15 2.00 2.37 -67.93 -0.16 1.84 16 7 H 0.10 1.45 7.58 -51.93 -0.39 1.06 16 8 C 0.06 0.77 6.85 37.16 0.25 1.03 16 9 O -0.57 -6.37 12.83 -35.23 -0.45 -6.83 16 10 N -0.73 -10.91 4.43 -54.85 -0.24 -11.15 16 11 C 0.56 11.35 7.73 -12.47 -0.10 11.25 16 12 O -0.52 -12.83 14.83 -16.57 -0.25 -13.07 16 13 C -0.23 -4.62 5.89 -104.81 -0.62 -5.24 16 14 C -0.04 -0.64 9.53 -39.20 -0.37 -1.02 16 15 C -0.22 -3.49 10.02 -39.61 -0.40 -3.89 16 16 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 17 C -0.23 -4.86 9.16 -39.44 -0.36 -5.22 16 18 C 0.20 4.80 6.66 -38.60 -0.26 4.54 16 19 O -0.17 -4.59 6.67 -21.06 -0.14 -4.73 16 20 C -0.40 -11.40 9.95 30.90 0.31 -11.09 16 21 H 0.11 3.07 5.44 -52.49 -0.29 2.78 16 22 C 0.07 2.06 5.49 -17.51 -0.10 1.97 16 23 N -0.87 -25.44 13.96 55.48 0.77 -24.66 16 24 Si 0.90 23.24 28.62 -169.99 -4.86 18.38 16 25 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.24 -6.47 7.11 56.52 0.40 -6.06 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.47 6.56 -51.93 -0.34 0.13 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.74 7.75 -51.93 -0.40 0.33 16 37 H 0.08 0.80 6.15 -51.93 -0.32 0.48 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.37 2.74 9.12 45.56 0.42 3.15 16 42 H 0.40 5.09 6.63 -40.82 -0.27 4.81 16 43 H 0.11 1.45 6.40 -52.48 -0.34 1.11 16 44 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 45 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 46 H 0.14 3.04 5.64 -52.48 -0.30 2.74 16 47 H 0.28 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -33.23 383.31 -7.85 -41.08 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -6.44 Total: 7.77 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -2.02 Total: -12.56 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.53 Total: -35.81 kcal Atomic # 8 Polarization: -23.80 SS G_CDS: -0.84 Total: -24.64 kcal Atomic # 14 Polarization: 23.24 SS G_CDS: -4.86 Total: 18.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.23 -7.85 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000862777090.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.528 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds