Wall clock time and date at job start Tue Mar 31 2020 14:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47415 * 2 1 4 4 O 1.42902 * 109.46869 * 119.99432 * 2 1 3 5 5 C 1.35965 * 116.99928 * 146.15806 * 4 2 1 6 6 C 1.38713 * 120.00083 * 6.12503 * 5 4 2 7 7 C 1.38104 * 120.00252 * 180.02562 * 6 5 4 8 8 C 1.38719 * 120.00021 * 0.02562 * 7 6 5 9 9 O 1.35985 * 120.00216 * 179.97438 * 8 7 6 10 10 C 1.34245 * 117.00054 * 75.21768 * 9 8 7 11 11 O 1.20834 * 119.99744 * 355.01210 * 10 9 8 12 12 C 1.50696 * 119.99868 * 175.01210 * 10 9 8 13 13 H 1.08998 * 109.47116 * 319.99836 * 12 10 9 14 14 N 1.46903 * 109.46656 * 200.00413 * 12 10 9 15 15 C 1.52991 * 109.47498 * 80.00280 * 12 10 9 16 16 C 1.53005 * 109.47430 * 184.99937 * 15 12 10 17 17 C 1.52999 * 109.47007 * 180.02562 * 16 15 12 18 18 C 1.50702 * 109.46864 * 179.97438 * 17 16 15 19 19 H 1.08003 * 119.99836 * 0.02562 * 18 17 16 20 20 C 1.37874 * 120.00073 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00052 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00088 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47003 * 59.99983 * 22 20 18 24 24 H 1.48497 * 109.47279 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.46885 * 299.99742 * 22 20 18 26 26 C 1.38712 * 119.99790 * 0.25577 * 8 7 6 27 27 C 1.38115 * 120.00019 * 359.44462 * 26 8 7 28 28 H 1.09007 * 109.46819 * 300.00811 * 1 2 3 29 29 H 1.08998 * 109.46993 * 60.00170 * 1 2 3 30 30 H 1.08995 * 109.46948 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47120 * 239.99234 * 2 1 3 32 32 H 1.08998 * 109.47088 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46356 * 299.99483 * 3 2 1 34 34 H 1.08994 * 109.47601 * 59.99529 * 3 2 1 35 35 H 1.08005 * 119.99735 * 359.97438 * 6 5 4 36 36 H 1.08001 * 120.00543 * 179.97438 * 7 6 5 37 37 H 1.00906 * 110.99535 * 176.04600 * 14 12 10 38 38 H 1.00897 * 111.00217 * 299.99520 * 14 12 10 39 39 H 1.09006 * 109.47269 * 64.99881 * 15 12 10 40 40 H 1.09000 * 109.47295 * 304.99743 * 15 12 10 41 41 H 1.08996 * 109.46951 * 59.99754 * 16 15 12 42 42 H 1.09003 * 109.46487 * 299.99692 * 16 15 12 43 43 H 1.09000 * 109.46983 * 299.99920 * 17 16 15 44 44 H 1.08996 * 109.47541 * 60.00023 * 17 16 15 45 45 H 0.97001 * 119.99904 * 180.02562 * 21 20 18 46 46 H 1.07995 * 119.99889 * 179.70351 * 26 8 7 47 47 H 1.07999 * 119.99936 * 180.26906 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.1607 -1.3811 1.0432 6 6 3.8868 -1.3229 -0.1373 7 6 5.0591 -2.0420 -0.2632 8 6 5.5103 -2.8231 0.7907 9 8 6.6643 -3.5316 0.6666 10 6 7.8137 -2.8418 0.7390 11 8 7.7909 -1.6362 0.8169 12 6 9.1324 -3.5711 0.7231 13 1 9.0539 -4.4768 1.3245 14 7 10.1787 -2.7030 1.2796 15 6 9.4915 -3.9443 -0.7165 16 6 10.7653 -4.7919 -0.7211 17 6 11.1248 -5.1645 -2.1608 18 6 12.3798 -5.9988 -2.1653 19 1 12.8715 -6.2395 -1.2344 20 6 12.9002 -6.4547 -3.3579 21 7 12.3011 -6.1619 -4.4915 22 14 14.4562 -7.4883 -3.3636 23 1 14.2314 -8.7256 -2.5738 24 1 14.8051 -7.8500 -4.7609 25 1 15.5687 -6.7113 -2.7605 26 6 4.7811 -2.8859 1.9691 27 6 3.6120 -2.1619 2.0972 28 1 -0.3633 0.5140 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1301 1.4424 -0.0005 33 1 1.6768 1.9562 -0.8901 34 1 1.6768 1.9564 0.8899 35 1 3.5349 -0.7157 -0.9583 36 1 5.6243 -1.9970 -1.1824 37 1 11.0596 -3.1915 1.3396 38 1 10.2710 -1.8560 0.7392 39 1 9.6571 -3.0364 -1.2967 40 1 8.6744 -4.5142 -1.1588 41 1 10.5998 -5.6996 -0.1409 42 1 11.5825 -4.2219 -0.2788 43 1 10.3077 -5.7341 -2.6034 44 1 11.2905 -4.2565 -2.7406 45 1 12.6671 -6.4830 -5.3305 46 1 5.1299 -3.4977 2.7878 47 1 3.0466 -2.2074 3.0162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001575813281.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:55 Heat of formation + Delta-G solvation = -108.952463 kcal Electronic energy + Delta-G solvation = -26086.815701 eV Core-core repulsion = 22234.715396 eV Total energy + Delta-G solvation = -3852.100305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41838 -40.33540 -38.23397 -36.71924 -36.02349 -33.56430 -33.42247 -31.36514 -31.31905 -29.57932 -28.04781 -27.71432 -25.88136 -23.91742 -23.51143 -22.44423 -21.24676 -20.51526 -20.22510 -18.79885 -18.23744 -17.29479 -16.87785 -16.31677 -15.77031 -15.42906 -15.20294 -15.07964 -14.82371 -14.56754 -14.44862 -14.23102 -13.82272 -13.71869 -13.52339 -13.12732 -12.90823 -12.72679 -12.67380 -12.54881 -12.21702 -12.08538 -11.92996 -11.83041 -11.36803 -11.27907 -11.05675 -10.86196 -10.82489 -10.68944 -10.61691 -10.35454 -9.81652 -9.47503 -9.35137 -9.19421 -8.71021 -8.39464 -8.34661 -6.04396 -4.07573 0.89581 1.01045 2.14705 2.62586 2.79606 3.30488 3.35232 3.37302 3.49791 4.26913 4.40468 4.41918 4.47007 4.54916 4.60443 4.64453 4.66590 4.93822 5.01741 5.07981 5.08579 5.18036 5.19879 5.26800 5.31412 5.31496 5.40418 5.61443 5.63559 5.69792 5.70410 5.76246 5.88960 5.98191 6.10257 6.17511 6.22217 6.51310 6.59577 6.68091 6.96756 7.02098 7.07412 7.42971 7.60148 7.72672 7.85345 7.94213 8.35715 8.99184 9.56950 11.06761 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.024121 B = 0.001939 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.538861 B =14434.658301 C =14962.455143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.177 4.177 4 O -0.309 6.309 5 C 0.133 3.867 6 C -0.197 4.197 7 C -0.076 4.076 8 C 0.049 3.951 9 O -0.291 6.291 10 C 0.467 3.533 11 O -0.486 6.486 12 C 0.106 3.894 13 H 0.117 0.883 14 N -0.831 5.831 15 C -0.149 4.149 16 C -0.108 4.108 17 C 0.022 3.978 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.895 5.895 22 Si 0.893 3.107 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.077 4.077 27 C -0.140 4.140 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.360 0.640 38 H 0.350 0.650 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.049 0.951 43 H 0.017 0.983 44 H 0.015 0.985 45 H 0.261 0.739 46 H 0.139 0.861 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.431 11.776 10.956 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.234 4.234 4 O -0.223 6.223 5 C 0.087 3.913 6 C -0.216 4.216 7 C -0.095 4.095 8 C 0.008 3.992 9 O -0.206 6.206 10 C 0.310 3.690 11 O -0.369 6.369 12 C -0.007 4.007 13 H 0.134 0.866 14 N -0.366 5.366 15 C -0.189 4.189 16 C -0.146 4.146 17 C -0.015 4.015 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.534 5.534 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.202 1.202 26 C -0.096 4.096 27 C -0.159 4.159 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.154 0.846 36 H 0.149 0.851 37 H 0.177 0.823 38 H 0.164 0.836 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.068 0.932 43 H 0.035 0.965 44 H 0.033 0.967 45 H 0.071 0.929 46 H 0.157 0.843 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -23.018 12.205 11.597 28.519 hybrid contribution 1.374 -0.571 -1.377 2.027 sum -21.645 11.635 10.220 26.614 Atomic orbital electron populations 1.21904 0.92564 1.03212 1.03119 1.22543 0.95399 0.92900 0.87594 1.22316 1.02293 0.95616 1.03194 1.86142 1.36838 1.62269 1.37014 1.19025 0.86320 0.91803 0.94130 1.21109 0.97290 1.04849 0.98307 1.21139 0.95742 0.94062 0.98529 1.18416 0.87317 0.98752 0.94761 1.84687 1.12821 1.40258 1.82813 1.24339 0.85673 0.87251 0.71772 1.90650 1.87098 1.15520 1.43648 1.21104 0.85726 0.95747 0.98158 0.86559 1.58672 1.10390 1.09237 1.58297 1.22461 1.01358 1.01705 0.93348 1.21663 0.93375 0.97586 1.01948 1.19080 0.96487 0.96536 0.89427 1.21198 1.09826 1.32525 0.92619 0.92674 1.25034 0.97387 0.96368 0.95686 1.69953 1.40000 1.45838 0.97619 0.86642 0.83533 0.80758 0.76977 1.20202 1.21289 1.20227 1.20962 0.94530 0.98121 0.95950 1.20253 0.97850 0.98883 0.98906 0.91427 0.90485 0.91629 0.90399 0.91775 0.90864 0.91348 0.84612 0.85054 0.82291 0.83566 0.91605 0.90682 0.92680 0.93241 0.96462 0.96679 0.92900 0.84282 0.84348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.56 37.16 0.36 -0.44 16 2 C 0.07 0.50 2.82 -26.73 -0.08 0.43 16 3 C -0.18 -1.11 9.46 37.16 0.35 -0.76 16 4 O -0.31 -3.01 9.78 -19.63 -0.19 -3.20 16 5 C 0.13 1.42 6.68 -39.23 -0.26 1.16 16 6 C -0.20 -2.09 8.81 -39.45 -0.35 -2.44 16 7 C -0.08 -0.95 9.46 -39.45 -0.37 -1.32 16 8 C 0.05 0.66 5.19 -39.23 -0.20 0.45 16 9 O -0.29 -4.17 10.03 -23.76 -0.24 -4.41 16 10 C 0.47 7.05 7.07 36.00 0.25 7.30 16 11 O -0.49 -8.34 15.68 -18.76 -0.29 -8.63 16 12 C 0.11 1.47 3.32 -68.87 -0.23 1.24 16 13 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 14 N -0.83 -11.05 8.94 -5.66 -0.05 -11.10 16 15 C -0.15 -2.36 4.84 -26.73 -0.13 -2.49 16 16 C -0.11 -2.02 4.92 -26.73 -0.13 -2.16 16 17 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 18 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 19 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -26.64 13.29 55.43 0.74 -25.90 16 22 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 C -0.08 -0.88 9.98 -39.45 -0.39 -1.27 16 27 C -0.14 -1.46 9.98 -39.45 -0.39 -1.85 16 28 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.51 5.77 -51.93 -0.30 0.21 16 32 H 0.06 0.47 7.99 -51.93 -0.42 0.06 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.14 1.14 5.84 -52.48 -0.31 0.83 16 36 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 37 H 0.36 4.40 7.55 -39.29 -0.30 4.10 16 38 H 0.35 4.72 8.58 -39.29 -0.34 4.38 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.88 6.87 -51.93 -0.36 0.52 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 46 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 47 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -32.23 392.57 -8.74 -40.97 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.47 Total: 5.04 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: -2.13 Total: -15.03 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.69 Total: -37.01 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.72 Total: -16.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.23 -8.74 -40.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001575813281.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.980 kcal (2) G-P(sol) polarization free energy of solvation -32.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds