Wall clock time and date at job start Tue Mar 31 2020 13:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35980 * 116.99927 * 2 1 4 4 C 1.38519 * 119.81297 * 359.97438 * 3 2 1 5 5 C 1.38113 * 119.87414 * 179.97438 * 4 3 2 6 6 C 1.38539 * 119.82510 * 0.07607 * 5 4 3 7 7 O 1.35979 * 119.82802 * 180.02562 * 6 5 4 8 8 C 1.42908 * 116.99794 * 359.97438 * 7 6 5 9 9 C 1.39103 * 120.34717 * 0.06431 * 6 5 4 10 10 C 1.37766 * 119.85248 * 359.76619 * 9 6 5 11 11 C 1.50630 * 121.85425 * 180.28696 * 10 9 6 12 12 N 1.46631 * 110.49734 * 342.44852 * 11 10 9 13 13 C 1.46902 * 110.99986 * 175.94045 * 12 11 10 14 14 H 1.08997 * 109.47114 * 186.04432 * 13 12 11 15 15 C 1.52998 * 109.46815 * 306.04746 * 13 12 11 16 16 C 1.52999 * 109.47032 * 66.04286 * 13 12 11 17 17 C 1.50702 * 109.47090 * 65.00338 * 16 13 12 18 18 H 1.08002 * 119.99657 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00209 * 179.97438 * 17 16 13 20 20 N 1.31517 * 120.00052 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 119.99941 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.46802 * 269.99951 * 21 19 17 23 23 H 1.48503 * 109.47096 * 29.99657 * 21 19 17 24 24 H 1.48494 * 109.46993 * 150.00199 * 21 19 17 25 25 C 1.47159 * 110.25400 * 52.51563 * 12 11 10 26 26 C 1.50721 * 118.48166 * 179.56059 * 9 6 5 27 27 H 1.09001 * 109.38598 * 283.30623 * 26 9 6 28 28 O 1.42901 * 109.39031 * 43.09824 * 26 9 6 29 29 H 1.09000 * 109.47005 * 299.99673 * 1 2 3 30 30 H 1.08996 * 109.47356 * 60.00304 * 1 2 3 31 31 H 1.09000 * 109.46914 * 180.02562 * 1 2 3 32 32 H 1.07998 * 120.06384 * 359.97438 * 4 3 2 33 33 H 1.08003 * 120.08751 * 180.02562 * 5 4 3 34 34 H 1.08993 * 109.46783 * 60.00345 * 8 7 6 35 35 H 1.09000 * 109.46911 * 180.02562 * 8 7 6 36 36 H 1.08998 * 109.46841 * 300.00151 * 8 7 6 37 37 H 1.08996 * 109.26914 * 222.18410 * 11 10 9 38 38 H 1.08997 * 109.27255 * 102.70856 * 11 10 9 39 39 H 1.09005 * 109.46878 * 180.02562 * 15 13 12 40 40 H 1.09004 * 109.47011 * 299.99356 * 15 13 12 41 41 H 1.08997 * 109.47536 * 59.99944 * 15 13 12 42 42 H 1.08998 * 109.47620 * 305.00409 * 16 13 12 43 43 H 1.09004 * 109.47257 * 184.99796 * 16 13 12 44 44 H 0.97001 * 119.99481 * 179.97438 * 20 19 17 45 45 H 1.09003 * 109.62761 * 48.47463 * 25 12 11 46 46 H 1.09005 * 109.62869 * 169.05765 * 25 12 11 47 47 H 0.96698 * 114.00214 * 185.42072 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2881 2.3708 -0.0005 5 6 1.9138 3.6021 0.0000 6 6 3.2974 3.6719 -0.0005 7 8 3.9135 4.8841 0.0005 8 6 3.0723 6.0394 0.0016 9 6 4.0598 2.5084 -0.0029 10 6 3.4362 1.2799 0.0001 11 6 4.2173 -0.0081 0.0040 12 7 5.6035 0.2308 -0.4100 13 6 6.4000 -1.0001 -0.3178 14 1 7.4453 -0.7729 -0.5267 15 6 6.2763 -1.5832 1.0913 16 6 5.8856 -2.0179 -1.3378 17 6 6.1200 -1.4948 -2.7315 18 1 6.5886 -0.5325 -2.8754 19 6 5.7363 -2.2448 -3.8230 20 7 5.9405 -1.7881 -5.0393 21 14 4.9252 -3.9090 -3.5742 22 1 5.9676 -4.9656 -3.5273 23 1 4.1673 -3.9043 -2.2971 24 1 3.9960 -4.1801 -4.7003 25 6 6.1988 1.3061 0.3993 26 6 5.5618 2.6333 -0.0136 27 1 5.8958 2.8966 -1.0172 28 8 5.9594 3.6557 0.9022 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2097 2.3120 -0.0014 33 1 1.3260 4.5082 0.0000 34 1 2.4432 6.0298 0.8916 35 1 3.6892 6.9380 0.0019 36 1 2.4430 6.0313 -0.8884 37 1 3.7523 -0.7128 -0.6852 38 1 4.2097 -0.4303 1.0089 39 1 6.8677 -2.4963 1.1598 40 1 6.6428 -0.8580 1.8180 41 1 5.2310 -1.8103 1.3001 42 1 4.8184 -2.1783 -1.1847 43 1 6.4168 -2.9611 -1.2096 44 1 5.6708 -2.3159 -5.8072 45 1 6.0051 1.1194 1.4556 46 1 7.2737 1.3451 0.2226 47 1 6.9066 3.8496 0.8883 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276280607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:52 Heat of formation + Delta-G solvation = -78.244592 kcal Electronic energy + Delta-G solvation = -28867.580777 eV Core-core repulsion = 25016.812065 eV Total energy + Delta-G solvation = -3850.768712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75424 -38.85596 -38.60357 -36.48938 -35.89806 -33.18701 -32.00032 -30.56061 -30.15157 -27.93750 -27.78331 -27.31999 -26.76670 -24.58725 -23.38253 -22.36964 -21.40354 -20.05918 -18.59470 -17.86332 -17.32915 -17.11168 -16.73734 -16.52032 -15.70721 -15.40799 -15.26875 -14.80776 -14.65951 -14.55832 -14.04806 -13.90392 -13.35160 -13.11744 -12.90099 -12.83411 -12.71348 -12.49151 -12.25146 -12.07178 -12.04050 -11.69356 -11.57595 -11.54816 -11.28020 -11.10620 -10.94983 -10.64599 -10.41463 -10.30647 -10.08364 -9.86578 -9.60791 -9.45788 -9.00202 -8.50633 -8.38274 -7.67246 -7.41177 -5.86806 -3.80712 1.33809 1.62212 3.35452 3.38604 3.46498 3.48720 3.49860 3.77608 4.25165 4.58305 4.62356 4.76355 4.84686 5.05382 5.07323 5.14708 5.16424 5.18985 5.23725 5.40797 5.45703 5.46621 5.49048 5.54910 5.58769 5.65249 5.77790 5.83634 5.87997 5.91508 6.02737 6.07813 6.15841 6.31847 6.39988 6.44054 6.55509 6.64871 6.69985 6.79402 7.13935 7.35227 7.41159 7.61633 7.69154 7.79806 7.91849 7.97872 8.75653 9.25680 9.76290 11.27241 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.004742 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.376738 B = 5902.879245 C = 6745.716864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.090 3.910 4 C -0.167 4.167 5 C -0.187 4.187 6 C 0.115 3.885 7 O -0.293 6.293 8 C 0.027 3.973 9 C -0.064 4.064 10 C -0.045 4.045 11 C 0.098 3.902 12 N -0.500 5.500 13 C 0.097 3.903 14 H 0.079 0.921 15 C -0.190 4.190 16 C -0.008 4.008 17 C -0.490 4.490 18 H 0.079 0.921 19 C 0.063 3.937 20 N -0.908 5.908 21 Si 0.871 3.129 22 H -0.280 1.280 23 H -0.267 1.267 24 H -0.290 1.290 25 C 0.021 3.979 26 C 0.163 3.837 27 H 0.077 0.923 28 O -0.552 6.552 29 H 0.050 0.950 30 H 0.053 0.947 31 H 0.097 0.903 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.049 0.951 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.105 0.895 38 H 0.049 0.951 39 H 0.058 0.942 40 H 0.044 0.956 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.039 0.961 46 H 0.078 0.922 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.222 11.242 14.017 19.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.224 6.224 3 C 0.045 3.955 4 C -0.186 4.186 5 C -0.206 4.206 6 C 0.069 3.931 7 O -0.206 6.206 8 C -0.068 4.068 9 C -0.065 4.065 10 C -0.046 4.046 11 C -0.029 4.029 12 N -0.224 5.224 13 C -0.011 4.011 14 H 0.097 0.903 15 C -0.249 4.249 16 C -0.046 4.046 17 C -0.528 4.528 18 H 0.097 0.903 19 C -0.137 4.137 20 N -0.548 5.548 21 Si 0.699 3.301 22 H -0.206 1.206 23 H -0.192 1.192 24 H -0.217 1.217 25 C -0.108 4.108 26 C 0.104 3.896 27 H 0.095 0.905 28 O -0.356 6.356 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.116 0.884 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.067 0.933 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.037 0.963 43 H 0.033 0.967 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.097 0.903 47 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -8.598 11.208 13.461 19.513 hybrid contribution -0.602 -0.903 0.589 1.234 sum -9.200 10.305 14.050 19.704 Atomic orbital electron populations 1.22999 0.79017 1.03730 1.00843 1.86120 1.20711 1.26416 1.89157 1.18630 0.91298 0.84371 1.01249 1.20852 0.99603 0.91629 1.06506 1.20853 0.93135 0.98172 1.08455 1.18728 0.90356 0.85429 0.98539 1.86251 1.34239 1.11508 1.88592 1.22984 0.95867 0.87340 1.00651 1.18388 0.94356 0.89272 1.04531 1.18800 0.90339 0.94606 1.00887 1.20902 0.88959 0.93219 0.99859 1.62345 1.00838 1.07118 1.52059 1.21746 0.97386 0.89163 0.92795 0.90280 1.22592 1.01823 1.01246 0.99240 1.19698 0.96174 0.93309 0.95375 1.21041 1.38480 1.05468 0.87831 0.90306 1.24994 0.95865 0.97515 0.95310 1.69916 1.48995 1.38152 0.97742 0.86926 0.79883 0.85453 0.77861 1.20623 1.19175 1.21670 1.22839 0.99433 0.92633 0.95905 1.20185 0.89597 0.86787 0.93065 0.90532 1.86594 1.28804 1.57167 1.63013 0.93141 0.92840 0.88412 0.85381 0.85463 0.93268 0.88645 0.93212 0.87694 0.93347 0.92263 0.93667 0.92588 0.96345 0.96691 0.93130 0.94260 0.90349 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.31 -4.86 9.60 -19.68 -0.19 -5.05 16 3 C 0.09 1.47 6.65 -39.14 -0.26 1.21 16 4 C -0.17 -2.31 9.02 -39.52 -0.36 -2.67 16 5 C -0.19 -2.57 9.02 -39.52 -0.36 -2.93 16 6 C 0.11 1.83 6.53 -39.15 -0.26 1.57 16 7 O -0.29 -4.28 8.57 -40.76 -0.35 -4.63 16 8 C 0.03 0.27 9.81 101.05 0.99 1.26 16 9 C -0.06 -1.13 5.60 -104.46 -0.59 -1.71 16 10 C -0.05 -0.81 5.80 -104.49 -0.61 -1.42 16 11 C 0.10 1.85 4.10 -5.16 -0.02 1.83 16 12 N -0.50 -9.69 4.36 -228.20 -0.99 -10.68 16 13 C 0.10 1.90 2.26 -67.71 -0.15 1.75 16 14 H 0.08 1.56 7.91 -51.93 -0.41 1.15 16 15 C -0.19 -3.08 8.44 37.16 0.31 -2.77 16 16 C -0.01 -0.19 3.43 -27.88 -0.10 -0.29 16 17 C -0.49 -13.93 9.39 -34.44 -0.32 -14.25 16 18 H 0.08 2.45 7.99 -52.49 -0.42 2.03 16 19 C 0.06 1.85 5.47 -17.82 -0.10 1.75 16 20 N -0.91 -28.53 13.96 55.43 0.77 -27.76 16 21 Si 0.87 22.08 27.47 -169.99 -4.67 17.41 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.51 6.54 56.52 0.37 -6.14 16 24 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 25 C 0.02 0.34 4.63 -3.73 -0.02 0.32 16 26 C 0.16 2.63 3.48 -27.93 -0.10 2.54 16 27 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 28 O -0.55 -7.84 11.57 -56.32 -0.65 -8.49 16 29 H 0.05 0.44 7.65 -51.93 -0.40 0.05 16 30 H 0.05 0.52 7.65 -51.93 -0.40 0.12 16 31 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.13 1.38 6.27 -52.49 -0.33 1.05 16 33 H 0.13 1.36 6.27 -52.48 -0.33 1.03 16 34 H 0.05 0.42 7.65 -51.93 -0.40 0.03 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.44 7.65 -51.93 -0.40 0.04 16 37 H 0.11 2.24 6.19 -51.93 -0.32 1.92 16 38 H 0.05 0.86 5.94 -51.93 -0.31 0.55 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.04 0.66 7.01 -51.93 -0.36 0.29 16 41 H 0.06 0.91 6.23 -51.93 -0.32 0.58 16 42 H 0.02 0.45 5.47 -51.93 -0.28 0.16 16 43 H 0.01 0.35 7.57 -51.93 -0.39 -0.04 16 44 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 45 H 0.04 0.62 7.23 -51.93 -0.38 0.25 16 46 H 0.08 1.15 7.87 -51.93 -0.41 0.74 16 47 H 0.37 3.60 9.11 45.56 0.42 4.02 16 LS Contribution 362.25 15.07 5.46 5.46 Total: -1.00 -34.63 362.25 -7.85 -42.47 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -6.30 Total: 3.79 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -0.93 Total: -12.52 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: -0.22 Total: -38.44 kcal Atomic # 8 Polarization: -16.98 SS G_CDS: -1.19 Total: -18.17 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.63 -7.85 -42.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276280607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.770 kcal (2) G-P(sol) polarization free energy of solvation -34.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds