Wall clock time and date at job start Tue Mar 31 2020 13:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 116.99855 * 2 1 4 4 C 1.38475 * 120.00524 * 359.97438 * 3 2 1 5 5 C 1.38501 * 120.33414 * 180.02562 * 4 3 2 6 6 C 1.37797 * 120.34335 * 359.69375 * 5 4 3 7 7 C 1.39765 * 119.99977 * 0.55753 * 6 5 4 8 8 C 1.47540 * 120.16193 * 179.74315 * 7 6 5 9 9 O 1.21589 * 119.99763 * 234.15438 * 8 7 6 10 10 N 1.34775 * 120.00416 * 54.15834 * 8 7 6 11 11 C 1.46501 * 119.99655 * 5.48156 * 10 8 7 12 12 C 1.46503 * 120.00348 * 185.47957 * 10 8 7 13 13 H 1.09001 * 109.46879 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.47000 * 119.99949 * 12 10 8 15 15 C 1.50700 * 109.47016 * 240.00078 * 12 10 8 16 16 H 1.08004 * 120.00240 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99870 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99939 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 119.99840 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47073 * 89.99976 * 19 17 15 21 21 H 1.48510 * 109.46758 * 209.99757 * 19 17 15 22 22 H 1.48498 * 109.46898 * 329.99492 * 19 17 15 23 23 C 1.39139 * 120.00357 * 179.97438 * 3 2 1 24 24 O 1.35744 * 120.16643 * 0.02562 * 23 3 2 25 25 C 1.42896 * 117.00105 * 276.48460 * 24 23 3 26 26 C 1.53000 * 109.47156 * 150.54174 * 25 24 23 27 27 C 1.52998 * 109.47330 * 270.54215 * 25 24 23 28 28 H 1.09001 * 109.47050 * 299.99543 * 1 2 3 29 29 H 1.09005 * 109.47178 * 59.99995 * 1 2 3 30 30 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.07991 * 119.83299 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.82695 * 179.97438 * 5 4 3 33 33 H 1.07994 * 120.00095 * 180.30305 * 6 5 4 34 34 H 1.08993 * 109.47110 * 84.64845 * 11 10 8 35 35 H 1.08994 * 109.46739 * 324.64285 * 11 10 8 36 36 H 1.09006 * 109.46675 * 204.64821 * 11 10 8 37 37 H 1.09001 * 109.47198 * 60.00326 * 14 12 10 38 38 H 1.08998 * 109.47084 * 179.97438 * 14 12 10 39 39 H 1.08996 * 109.47120 * 299.99608 * 14 12 10 40 40 H 0.97005 * 119.99688 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46890 * 30.54121 * 25 24 23 42 42 H 1.08999 * 109.47264 * 60.00176 * 26 25 24 43 43 H 1.08999 * 109.46848 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.47044 * 299.99968 * 26 25 24 45 45 H 1.09002 * 109.47200 * 66.43644 * 27 25 24 46 46 H 1.09001 * 109.47573 * 186.43199 * 27 25 24 47 47 H 1.09000 * 109.47219 * 306.44032 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2923 2.3731 -0.0005 5 6 1.9139 3.6108 -0.0011 6 6 3.2891 3.6991 0.0053 7 6 4.0640 2.5360 0.0005 8 6 5.5367 2.6264 0.0016 9 8 6.1816 2.0519 -0.8542 10 7 6.1671 3.3457 0.9511 11 6 5.4011 3.9381 2.0505 12 6 7.6182 3.5352 0.8840 13 1 8.0108 3.0259 0.0038 14 6 7.9337 5.0294 0.7912 15 6 8.2574 2.9628 2.1229 16 1 7.6440 2.5042 2.8844 17 6 9.6253 3.0246 2.2844 18 7 10.1830 2.5256 3.3658 19 14 10.6862 3.8185 0.9676 20 1 10.8357 5.2669 1.2592 21 1 12.0246 3.1751 0.9559 22 1 10.0416 3.6445 -0.3588 23 6 3.4359 1.2847 0.0005 24 8 4.1786 0.1485 0.0005 25 6 4.4127 -0.4735 1.2655 26 6 4.5727 -1.9825 1.0700 27 6 5.6886 0.0983 1.8868 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2140 2.3136 -0.0005 32 1 1.3178 4.5113 -0.0019 33 1 3.7680 4.6670 0.0098 34 1 5.2670 3.1984 2.8398 35 1 4.4262 4.2580 1.6829 36 1 5.9403 4.7986 2.4467 37 1 7.5411 5.5390 1.6711 38 1 9.0134 5.1704 0.7417 39 1 7.4714 5.4433 -0.1049 40 1 11.1454 2.5688 3.4791 41 1 3.5683 -0.2804 1.9272 42 1 5.4171 -2.1757 0.4084 43 1 4.7509 -2.4570 2.0350 44 1 3.6638 -2.3900 0.6275 45 1 5.5342 1.1493 2.1314 46 1 5.9300 -0.4543 2.7947 47 1 6.5107 0.0077 1.1767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647651663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:58 Heat of formation + Delta-G solvation = -65.573263 kcal Electronic energy + Delta-G solvation = -29177.191064 eV Core-core repulsion = 25326.971822 eV Total energy + Delta-G solvation = -3850.219242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.76830 -39.15157 -38.08745 -36.91006 -35.45396 -32.87621 -32.77272 -31.12648 -29.67965 -29.61723 -27.48718 -26.82172 -26.25559 -25.11690 -23.72964 -22.66975 -21.22428 -20.86613 -19.05844 -17.81520 -17.53909 -16.72224 -16.62318 -16.16201 -15.81713 -15.58138 -15.21869 -14.82376 -14.60509 -14.43505 -13.98705 -13.43089 -13.34927 -13.02814 -12.85034 -12.73032 -12.52271 -12.37915 -12.22792 -12.05562 -11.92470 -11.78367 -11.75203 -11.51585 -11.40410 -11.17669 -11.11204 -11.04337 -10.66875 -10.45004 -10.12875 -9.68824 -9.64527 -9.32500 -9.09421 -8.74516 -8.60988 -8.17563 -7.68967 -6.12012 -4.11854 0.94674 1.23781 2.95263 3.23757 3.24774 3.38949 3.41730 3.53121 3.82642 3.98988 4.37526 4.66115 4.77011 4.90655 4.92956 5.04514 5.11855 5.20568 5.22203 5.25425 5.34060 5.37755 5.45691 5.47214 5.72482 5.88659 5.97862 6.02507 6.09448 6.15043 6.17725 6.21192 6.26008 6.28594 6.30304 6.34550 6.44531 6.49769 6.52623 6.84926 6.90680 7.09927 7.15104 7.36403 7.65318 7.81838 8.18810 8.48679 8.87139 8.93135 9.49416 11.00614 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.004465 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.087922 B = 6270.003966 C = 7202.702189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.305 6.305 3 C 0.098 3.902 4 C -0.188 4.188 5 C -0.094 4.094 6 C -0.115 4.115 7 C -0.095 4.095 8 C 0.556 3.444 9 O -0.526 6.526 10 N -0.581 5.581 11 C 0.077 3.923 12 C 0.230 3.770 13 H 0.062 0.938 14 C -0.162 4.162 15 C -0.521 4.521 16 H 0.080 0.920 17 C 0.076 3.924 18 N -0.895 5.895 19 Si 0.880 3.120 20 H -0.278 1.278 21 H -0.295 1.295 22 H -0.263 1.263 23 C 0.116 3.884 24 O -0.308 6.308 25 C 0.091 3.909 26 C -0.145 4.145 27 C -0.174 4.174 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.132 0.868 32 H 0.131 0.869 33 H 0.136 0.864 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.051 0.949 39 H 0.033 0.967 40 H 0.265 0.735 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.663 -0.257 -3.170 20.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.052 3.948 4 C -0.207 4.207 5 C -0.112 4.112 6 C -0.134 4.134 7 C -0.099 4.099 8 C 0.342 3.658 9 O -0.402 6.402 10 N -0.313 5.313 11 C -0.066 4.066 12 C 0.129 3.871 13 H 0.080 0.920 14 C -0.220 4.220 15 C -0.560 4.560 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.533 5.533 19 Si 0.711 3.289 20 H -0.205 1.205 21 H -0.222 1.222 22 H -0.188 1.188 23 C 0.070 3.930 24 O -0.225 6.225 25 C 0.036 3.964 26 C -0.202 4.202 27 C -0.232 4.232 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.154 0.846 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -19.940 -0.894 -3.654 20.292 hybrid contribution 0.298 0.772 -0.251 0.865 sum -19.642 -0.122 -3.905 20.027 Atomic orbital electron populations 1.23073 0.78734 1.03931 1.01195 1.86182 1.20927 1.26031 1.88689 1.19325 0.91372 0.85066 0.99009 1.21195 0.99960 0.91887 1.07699 1.20824 0.94173 0.97048 0.99137 1.21104 0.93505 0.97435 1.01371 1.20347 0.95083 0.92606 1.01818 1.17838 0.85912 0.79545 0.82525 1.90777 1.66515 1.44507 1.38436 1.47773 1.09238 1.50683 1.23560 1.21828 0.95514 0.99157 0.90130 1.19308 0.75735 0.92213 0.99866 0.91983 1.22481 1.00366 0.99374 0.99794 1.21121 0.92469 1.38633 1.03752 0.90224 1.24842 0.97653 0.94947 0.95197 1.69872 1.11172 1.45570 1.26653 0.86961 0.79738 0.78866 0.83384 1.20494 1.22207 1.18820 1.17872 0.86012 0.86383 1.02716 1.86135 1.70118 1.36113 1.30089 1.22402 0.97359 0.93203 0.83432 1.21818 1.02814 0.93163 1.02400 1.22371 0.97807 1.01755 1.01238 0.92727 0.92678 0.88247 0.85006 0.85079 0.84631 0.93204 0.92010 0.90398 0.92480 0.93098 0.94809 0.92527 0.92664 0.91496 0.91087 0.92121 0.91871 0.91636 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.95 10.28 -34.28 -0.35 -4.31 16 3 C 0.10 1.38 6.69 -39.16 -0.26 1.12 16 4 C -0.19 -2.07 9.03 -39.40 -0.36 -2.43 16 5 C -0.09 -1.00 10.02 -39.65 -0.40 -1.40 16 6 C -0.12 -1.55 7.59 -39.17 -0.30 -1.84 16 7 C -0.09 -1.65 4.99 -104.87 -0.52 -2.17 16 8 C 0.56 11.78 4.96 -12.47 -0.06 11.72 16 9 O -0.53 -13.31 16.11 2.30 0.04 -13.28 16 10 N -0.58 -12.02 2.31 -176.49 -0.41 -12.43 16 11 C 0.08 1.29 9.17 59.85 0.55 1.83 16 12 C 0.23 5.53 2.22 -69.08 -0.15 5.37 16 13 H 0.06 1.68 5.97 -51.93 -0.31 1.37 16 14 C -0.16 -3.44 8.66 37.16 0.32 -3.12 16 15 C -0.52 -14.16 8.95 -34.44 -0.31 -14.47 16 16 H 0.08 2.32 7.89 -52.48 -0.41 1.91 16 17 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 18 N -0.90 -26.69 13.96 55.43 0.77 -25.92 16 19 Si 0.88 21.84 24.37 -169.99 -4.14 17.70 16 20 H -0.28 -6.58 6.87 56.52 0.39 -6.20 16 21 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 22 H -0.26 -6.49 6.53 56.52 0.37 -6.12 16 23 C 0.12 2.02 5.56 -38.58 -0.21 1.80 16 24 O -0.31 -5.87 8.70 -38.98 -0.34 -6.21 16 25 C 0.09 1.51 3.40 -26.73 -0.09 1.42 16 26 C -0.14 -2.02 9.56 37.16 0.36 -1.67 16 27 C -0.17 -3.29 8.65 37.16 0.32 -2.97 16 28 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 29 H 0.05 0.36 7.66 -51.93 -0.40 -0.04 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.13 1.03 6.27 -52.49 -0.33 0.70 16 32 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 33 H 0.14 1.62 7.29 -52.49 -0.38 1.23 16 34 H 0.05 0.85 7.41 -51.93 -0.38 0.46 16 35 H 0.06 0.83 4.44 -51.93 -0.23 0.60 16 36 H 0.08 1.27 6.44 -51.93 -0.33 0.93 16 37 H 0.06 1.11 6.67 -51.93 -0.35 0.77 16 38 H 0.05 1.13 3.27 -51.93 -0.17 0.96 16 39 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 41 H 0.06 0.84 7.91 -51.93 -0.41 0.43 16 42 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.06 1.26 5.71 -51.93 -0.30 0.97 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.07 1.65 8.14 -51.93 -0.42 1.23 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -34.11 368.89 -6.06 -40.18 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.97 Total: 2.27 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -0.22 Total: -3.55 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 0.37 Total: -38.35 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.65 Total: -23.80 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.70 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.11 -6.06 -40.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.396 kcal (2) G-P(sol) polarization free energy of solvation -34.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds