Wall clock time and date at job start Tue Mar 31 2020 13:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35996 * 116.99855 * 2 1 4 4 C 1.38475 * 120.00524 * 359.97438 * 3 2 1 5 5 C 1.38501 * 120.33414 * 180.02562 * 4 3 2 6 6 C 1.37797 * 120.34335 * 359.69375 * 5 4 3 7 7 C 1.39765 * 119.99977 * 0.55753 * 6 5 4 8 8 C 1.47540 * 120.16193 * 179.74315 * 7 6 5 9 9 O 1.21589 * 119.99763 * 234.15438 * 8 7 6 10 10 N 1.34775 * 120.00416 * 54.15834 * 8 7 6 11 11 C 1.46501 * 119.99655 * 5.48156 * 10 8 7 12 12 C 1.46503 * 120.00348 * 185.47957 * 10 8 7 13 13 H 1.09001 * 109.46879 * 0.02562 * 12 10 8 14 14 C 1.52996 * 109.47000 * 119.99949 * 12 10 8 15 15 C 1.50700 * 109.47016 * 240.00078 * 12 10 8 16 16 H 1.08004 * 120.00240 * 359.97438 * 15 12 10 17 17 C 1.37877 * 119.99870 * 179.97438 * 15 12 10 18 18 N 1.31513 * 119.99939 * 179.97438 * 17 15 12 19 19 Si 1.86804 * 119.99840 * 0.02562 * 17 15 12 20 20 H 1.48495 * 109.47073 * 89.99976 * 19 17 15 21 21 H 1.48510 * 109.46758 * 209.99757 * 19 17 15 22 22 H 1.48498 * 109.46898 * 329.99492 * 19 17 15 23 23 C 1.39139 * 120.00357 * 179.97438 * 3 2 1 24 24 O 1.35744 * 120.16643 * 0.02562 * 23 3 2 25 25 C 1.42896 * 117.00105 * 276.48460 * 24 23 3 26 26 C 1.53000 * 109.47156 * 150.54174 * 25 24 23 27 27 C 1.52998 * 109.47330 * 270.54215 * 25 24 23 28 28 H 1.09001 * 109.47050 * 299.99543 * 1 2 3 29 29 H 1.09005 * 109.47178 * 59.99995 * 1 2 3 30 30 H 1.08997 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.07991 * 119.83299 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.82695 * 179.97438 * 5 4 3 33 33 H 1.07994 * 120.00095 * 180.30305 * 6 5 4 34 34 H 1.08993 * 109.47110 * 84.64845 * 11 10 8 35 35 H 1.08994 * 109.46739 * 324.64285 * 11 10 8 36 36 H 1.09006 * 109.46675 * 204.64821 * 11 10 8 37 37 H 1.09001 * 109.47198 * 60.00326 * 14 12 10 38 38 H 1.08998 * 109.47084 * 179.97438 * 14 12 10 39 39 H 1.08996 * 109.47120 * 299.99608 * 14 12 10 40 40 H 0.97005 * 119.99688 * 179.97438 * 18 17 15 41 41 H 1.08999 * 109.46890 * 30.54121 * 25 24 23 42 42 H 1.08999 * 109.47264 * 60.00176 * 26 25 24 43 43 H 1.08999 * 109.46848 * 180.02562 * 26 25 24 44 44 H 1.08994 * 109.47044 * 299.99968 * 26 25 24 45 45 H 1.09002 * 109.47200 * 66.43644 * 27 25 24 46 46 H 1.09001 * 109.47573 * 186.43199 * 27 25 24 47 47 H 1.09000 * 109.47219 * 306.44032 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2923 2.3731 -0.0005 5 6 1.9139 3.6108 -0.0011 6 6 3.2891 3.6991 0.0053 7 6 4.0640 2.5360 0.0005 8 6 5.5367 2.6264 0.0016 9 8 6.1816 2.0519 -0.8542 10 7 6.1671 3.3457 0.9511 11 6 5.4011 3.9381 2.0505 12 6 7.6182 3.5352 0.8840 13 1 8.0108 3.0259 0.0038 14 6 7.9337 5.0294 0.7912 15 6 8.2574 2.9628 2.1229 16 1 7.6440 2.5042 2.8844 17 6 9.6253 3.0246 2.2844 18 7 10.1830 2.5256 3.3658 19 14 10.6862 3.8185 0.9676 20 1 10.8357 5.2669 1.2592 21 1 12.0246 3.1751 0.9559 22 1 10.0416 3.6445 -0.3588 23 6 3.4359 1.2847 0.0005 24 8 4.1786 0.1485 0.0005 25 6 4.4127 -0.4735 1.2655 26 6 4.5727 -1.9825 1.0700 27 6 5.6886 0.0983 1.8868 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.2140 2.3136 -0.0005 32 1 1.3178 4.5113 -0.0019 33 1 3.7680 4.6670 0.0098 34 1 5.2670 3.1984 2.8398 35 1 4.4262 4.2580 1.6829 36 1 5.9403 4.7986 2.4467 37 1 7.5411 5.5390 1.6711 38 1 9.0134 5.1704 0.7417 39 1 7.4714 5.4433 -0.1049 40 1 11.1454 2.5688 3.4791 41 1 3.5683 -0.2804 1.9272 42 1 5.4171 -2.1757 0.4084 43 1 4.7509 -2.4570 2.0350 44 1 3.6638 -2.3900 0.6275 45 1 5.5342 1.1493 2.1314 46 1 5.9300 -0.4543 2.7947 47 1 6.5107 0.0077 1.1767 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647651663.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:11:57 Heat of formation + Delta-G solvation = -88.542610 kcal Electronic energy + Delta-G solvation = -29178.187089 eV Core-core repulsion = 25326.971822 eV Total energy + Delta-G solvation = -3851.215267 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.177 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.93721 -40.51887 -39.32792 -37.98294 -37.24156 -34.77990 -34.11749 -32.77567 -31.01773 -30.67081 -28.34731 -28.10212 -27.69534 -27.12325 -25.09405 -23.73030 -22.69552 -22.18420 -20.49155 -19.17922 -18.93359 -18.43992 -17.79034 -17.66461 -17.15529 -16.81040 -16.43955 -16.19331 -15.97097 -15.50672 -15.48940 -14.99063 -14.75203 -14.64264 -14.26739 -14.10439 -13.96532 -13.69748 -13.64046 -13.37215 -13.32054 -13.19035 -13.06229 -12.95128 -12.78713 -12.56991 -12.43383 -12.21656 -12.05701 -11.99736 -11.75449 -11.59372 -11.33880 -11.06511 -10.78982 -10.68527 -9.88522 -9.41321 -9.15109 -8.33243 -6.36287 -0.14597 0.24061 1.24208 1.34964 1.43057 1.66997 2.11906 2.28023 2.34528 2.46899 2.84208 3.02176 3.55665 3.83586 3.91414 3.96788 4.04067 4.12683 4.20594 4.28489 4.35612 4.42465 4.44264 4.45382 4.50523 4.56373 4.59853 4.61979 4.70368 4.74926 4.77305 4.84634 4.89393 4.94950 5.05416 5.10972 5.18950 5.19352 5.28535 5.31898 5.34226 5.49137 5.59478 5.72810 6.19819 6.23625 6.62732 6.65213 6.69076 7.20847 7.34513 8.82625 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017727 B = 0.004465 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.087922 B = 6270.003966 C = 7202.702189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.329 6.329 3 C 0.096 3.904 4 C -0.171 4.171 5 C -0.072 4.072 6 C -0.119 4.119 7 C -0.123 4.123 8 C 0.555 3.445 9 O -0.584 6.584 10 N -0.584 5.584 11 C 0.076 3.924 12 C 0.232 3.768 13 H 0.025 0.975 14 C -0.154 4.154 15 C -0.516 4.516 16 H 0.046 0.954 17 C 0.025 3.975 18 N -0.938 5.938 19 Si 0.936 3.064 20 H -0.250 1.250 21 H -0.298 1.298 22 H -0.267 1.267 23 C 0.076 3.924 24 O -0.337 6.337 25 C 0.093 3.907 26 C -0.139 4.139 27 C -0.164 4.164 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.174 0.826 32 H 0.180 0.820 33 H 0.152 0.848 34 H 0.038 0.962 35 H 0.101 0.899 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.071 0.929 42 H 0.048 0.952 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.045 0.955 46 H 0.076 0.924 47 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.647 1.896 -3.495 24.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.243 6.243 3 C 0.050 3.950 4 C -0.190 4.190 5 C -0.090 4.090 6 C -0.137 4.137 7 C -0.126 4.126 8 C 0.344 3.656 9 O -0.465 6.465 10 N -0.314 5.314 11 C -0.065 4.065 12 C 0.129 3.871 13 H 0.043 0.957 14 C -0.212 4.212 15 C -0.554 4.554 16 H 0.065 0.935 17 C -0.173 4.173 18 N -0.577 5.577 19 Si 0.764 3.236 20 H -0.176 1.176 21 H -0.225 1.225 22 H -0.192 1.192 23 C 0.031 3.969 24 O -0.254 6.254 25 C 0.039 3.961 26 C -0.196 4.196 27 C -0.221 4.221 28 H 0.092 0.908 29 H 0.089 0.911 30 H 0.133 0.867 31 H 0.191 0.809 32 H 0.197 0.803 33 H 0.169 0.831 34 H 0.057 0.943 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.089 0.911 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -23.971 1.291 -3.956 24.330 hybrid contribution 1.339 0.022 -0.120 1.345 sum -22.632 1.312 -4.076 23.033 Atomic orbital electron populations 1.23445 0.75938 1.05737 1.02804 1.86154 1.23790 1.25851 1.88499 1.19340 0.90287 0.86692 0.98713 1.21710 1.01837 0.90684 1.04761 1.21344 0.93018 0.98753 0.95844 1.21348 0.94778 0.96442 1.01158 1.20137 0.92469 0.94574 1.05457 1.18498 0.87818 0.77972 0.81355 1.90724 1.68349 1.46725 1.40674 1.47774 1.08144 1.50890 1.24569 1.22032 0.96982 0.98687 0.88833 1.18994 0.77884 0.93831 0.96386 0.95710 1.22326 1.00057 0.96832 1.01953 1.21272 0.92404 1.37816 1.03929 0.93529 1.25570 0.98992 0.95716 0.97056 1.69996 1.11580 1.47499 1.28668 0.86060 0.77572 0.79446 0.80554 1.17558 1.22545 1.19185 1.18243 0.87658 0.85659 1.05354 1.86104 1.71096 1.37217 1.30975 1.22437 0.96047 0.94284 0.83378 1.21812 1.02751 0.91627 1.03403 1.22265 0.97975 1.01194 1.00684 0.90792 0.91131 0.86666 0.80852 0.80272 0.83082 0.94323 0.88086 0.89766 0.90582 0.93962 0.92334 0.92398 0.91095 0.93270 0.88831 0.90679 0.93589 0.90472 0.95144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.28 16 2 O -0.33 -7.78 10.28 -79.60 -0.82 -8.59 16 3 C 0.10 2.48 6.69 22.54 0.15 2.63 16 4 C -0.17 -2.92 9.03 22.39 0.20 -2.72 16 5 C -0.07 -1.15 10.02 22.23 0.22 -0.93 16 6 C -0.12 -2.82 7.59 22.53 0.17 -2.65 16 7 C -0.12 -4.26 4.99 -20.02 -0.10 -4.36 16 8 C 0.55 24.56 4.96 86.70 0.43 24.98 16 9 O -0.58 -31.76 16.11 -1.14 -0.02 -31.78 16 10 N -0.58 -24.85 2.31 -830.56 -1.92 -26.77 16 11 C 0.08 2.52 9.17 127.77 1.17 3.69 16 12 C 0.23 11.51 2.22 44.24 0.10 11.60 16 13 H 0.02 1.42 5.97 -2.39 -0.01 1.41 16 14 C -0.15 -6.38 8.66 71.98 0.62 -5.75 16 15 C -0.52 -29.34 8.95 25.60 0.23 -29.12 16 16 H 0.05 2.89 7.89 -2.91 -0.02 2.87 16 17 C 0.03 1.48 5.45 84.65 0.46 1.94 16 18 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 19 Si 0.94 46.01 24.37 68.60 1.67 47.68 16 20 H -0.25 -11.15 6.87 99.48 0.68 -10.46 16 21 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 22 H -0.27 -13.17 6.53 99.48 0.65 -12.52 16 23 C 0.08 2.66 5.56 22.92 0.13 2.78 16 24 O -0.34 -13.47 8.70 -71.52 -0.62 -14.09 16 25 C 0.09 3.23 3.40 30.59 0.10 3.33 16 26 C -0.14 -3.97 9.56 71.98 0.69 -3.28 16 27 C -0.16 -6.70 8.65 71.98 0.62 -6.07 16 28 H 0.07 0.57 7.66 -2.39 -0.02 0.55 16 29 H 0.07 0.60 7.66 -2.38 -0.02 0.58 16 30 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.17 1.51 6.27 -2.92 -0.02 1.49 16 32 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.15 3.04 7.29 -2.91 -0.02 3.02 16 34 H 0.04 1.35 7.41 -2.39 -0.02 1.33 16 35 H 0.10 2.50 4.44 -2.39 -0.01 2.49 16 36 H 0.08 2.64 6.44 -2.38 -0.02 2.62 16 37 H 0.08 2.83 6.67 -2.39 -0.02 2.81 16 38 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 39 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.07 2.19 7.91 -2.39 -0.02 2.17 16 42 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.05 1.99 5.71 -2.39 -0.01 1.97 16 46 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 47 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -82.69 368.89 5.81 -76.89 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.90 Total: 17.03 kcal Atomic # 6 Polarization: -8.95 SS G_CDS: 6.31 Total: -2.63 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -1.62 Total: -84.50 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -1.46 Total: -54.47 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -82.69 5.81 -76.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647651663.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.656 kcal (2) G-P(sol) polarization free energy of solvation -82.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds