Wall clock time and date at job start Tue Mar 31 2020 13:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35122 * 125.54924 * 2 1 4 4 C 1.40983 * 108.24109 * 179.97438 * 3 2 1 5 5 N 1.33304 * 126.35885 * 180.02562 * 4 3 2 6 6 C 1.32912 * 119.99903 * 359.97438 * 5 4 3 7 7 O 1.21596 * 119.99928 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.99939 * 179.97438 * 6 5 4 9 9 C 1.53001 * 109.46726 * 179.97438 * 8 6 5 10 10 C 1.53005 * 109.46862 * 180.02562 * 9 8 6 11 11 C 1.53178 * 109.54371 * 294.55776 * 10 9 8 12 12 C 1.53097 * 109.16079 * 183.14984 * 11 10 9 13 13 O 1.42899 * 109.41327 * 57.61365 * 12 11 10 14 14 C 1.42904 * 114.09571 * 298.83638 * 13 12 11 15 15 C 1.53092 * 109.41443 * 61.16093 * 14 13 12 16 16 N 1.37284 * 107.28321 * 359.76076 * 4 3 2 17 17 H 0.96998 * 126.34329 * 180.25859 * 16 4 3 18 18 N 1.36334 * 125.55091 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.86516 * 0.02562 * 18 2 1 20 20 C 1.50706 * 109.46949 * 84.99868 * 19 18 2 21 21 H 1.07995 * 120.00167 * 359.72205 * 20 19 18 22 22 C 1.37879 * 119.99394 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00338 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99424 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47474 * 90.00322 * 24 22 20 26 26 H 1.48507 * 109.46754 * 210.00056 * 24 22 20 27 27 H 1.48498 * 109.47278 * 329.99887 * 24 22 20 28 28 H 1.08995 * 109.47210 * 270.01527 * 1 2 3 29 29 H 1.08998 * 109.47128 * 30.02287 * 1 2 3 30 30 H 1.09003 * 109.46937 * 150.02011 * 1 2 3 31 31 H 1.08002 * 125.87992 * 359.97438 * 3 2 1 32 32 H 1.08992 * 109.47453 * 300.00159 * 8 6 5 33 33 H 1.08998 * 109.46628 * 60.00477 * 8 6 5 34 34 H 1.08995 * 109.47674 * 299.99924 * 9 8 6 35 35 H 1.08998 * 109.47170 * 60.00818 * 9 8 6 36 36 H 1.09002 * 109.53975 * 54.82927 * 10 9 8 37 37 H 1.08992 * 109.52220 * 303.05892 * 11 10 9 38 38 H 1.09001 * 109.51843 * 63.24769 * 11 10 9 39 39 H 1.08996 * 109.48348 * 297.62864 * 12 11 10 40 40 H 1.08999 * 109.47487 * 177.59250 * 12 11 10 41 41 H 1.09004 * 109.48408 * 301.17786 * 14 13 12 42 42 H 1.09004 * 109.49413 * 181.15041 * 14 13 12 43 43 H 1.09007 * 109.52117 * 182.48247 * 15 14 13 44 44 H 1.09006 * 109.52128 * 62.30078 * 15 14 13 45 45 H 1.09000 * 109.47175 * 324.99894 * 19 18 2 46 46 H 1.09001 * 109.47297 * 204.99402 * 19 18 2 47 47 H 0.96996 * 119.99730 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6386 0.6799 0.0006 5 7 4.7125 1.4697 0.0013 6 6 4.5659 2.7907 0.0009 7 8 3.4522 3.2788 -0.0005 8 6 5.7799 3.6836 0.0022 9 6 5.3360 5.1478 0.0008 10 6 6.5685 6.0544 0.0016 11 6 7.3354 5.8755 1.3154 12 6 8.5219 6.8428 1.3404 13 8 8.0465 8.1816 1.1869 14 6 7.3624 8.4202 -0.0449 15 6 6.1295 7.5163 -0.1256 16 7 3.6380 -0.6929 0.0064 17 1 4.4191 -1.2681 0.0117 18 7 2.2997 -1.1092 0.0005 19 6 1.8328 -2.4978 0.0006 20 6 1.5558 -2.9347 -1.4149 21 1 1.7077 -2.2455 -2.2323 22 6 1.1036 -4.2129 -1.6658 23 7 0.9135 -5.0505 -0.6699 24 14 0.7610 -4.7546 -3.4203 25 1 1.9924 -5.3424 -4.0064 26 1 -0.3218 -5.7710 -3.4220 27 1 0.3398 -3.5814 -4.2274 28 1 -0.3633 0.0003 1.0276 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 1.9487 2.1232 -0.0004 32 1 6.3760 3.4851 0.8929 33 1 6.3780 3.4848 -0.8871 34 1 4.7402 5.3461 -0.8901 35 1 4.7376 5.3469 0.8899 36 1 7.2137 5.7932 -0.8373 37 1 6.6740 6.0885 2.1551 38 1 7.6994 4.8506 1.3880 39 1 9.2035 6.6032 0.5243 40 1 9.0463 6.7501 2.2914 41 1 8.0289 8.2013 -0.8792 42 1 7.0517 9.4639 -0.0922 43 1 5.6309 7.6650 -1.0835 44 1 5.4436 7.7625 0.6850 45 1 0.9189 -2.5738 0.5897 46 1 2.5997 -3.1390 0.4352 47 1 0.5950 -5.9495 -0.8464 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000329020607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:59 Heat of formation + Delta-G solvation = -11.536304 kcal Electronic energy + Delta-G solvation = -26338.395949 eV Core-core repulsion = 22522.812677 eV Total energy + Delta-G solvation = -3815.583272 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.96017 -39.66494 -38.48423 -35.47453 -34.32970 -33.14943 -32.26123 -31.43127 -31.01816 -30.47363 -27.57056 -27.03998 -25.80277 -23.74301 -23.33163 -22.39773 -21.05701 -20.05482 -19.70564 -18.85861 -17.15155 -16.82031 -16.35032 -16.19713 -15.67472 -15.38784 -15.16981 -14.95609 -14.77416 -14.52690 -14.21380 -14.00778 -13.77805 -12.96584 -12.89078 -12.84004 -12.79211 -12.47936 -12.32635 -12.08735 -12.00198 -11.86556 -11.78657 -11.48816 -11.33012 -11.13576 -11.09584 -10.75468 -10.55269 -10.39088 -10.37269 -10.31664 -9.65297 -9.47001 -9.25641 -8.95817 -8.88743 -8.31629 -6.98685 -6.53482 -4.69557 1.62553 2.02555 2.95107 3.02723 3.11043 3.14886 3.68920 4.01823 4.18935 4.36615 4.51498 4.59410 4.71312 4.77467 4.83846 4.97849 5.00700 5.07418 5.23180 5.27782 5.42709 5.47562 5.51530 5.54636 5.61398 5.72868 5.76412 5.79969 5.84308 5.90684 5.93185 6.00488 6.09905 6.13306 6.25344 6.39123 6.46972 6.48364 6.53552 6.59501 6.75689 6.99627 7.34344 7.45993 7.49103 7.63620 7.96361 8.34882 8.41098 9.01132 9.40683 10.48840 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.031123 B = 0.001965 C = 0.001951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.441659 B =14247.581156 C =14350.807606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.190 3.810 3 C -0.333 4.333 4 C 0.470 3.530 5 N -0.706 5.706 6 C 0.490 3.510 7 O -0.590 6.590 8 C -0.112 4.112 9 C -0.097 4.097 10 C -0.090 4.090 11 C -0.154 4.154 12 C 0.060 3.940 13 O -0.387 6.387 14 C 0.061 3.939 15 C -0.151 4.151 16 N -0.467 5.467 17 H 0.445 0.555 18 N -0.339 5.339 19 C 0.253 3.747 20 C -0.557 4.557 21 H 0.069 0.931 22 C 0.071 3.929 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.276 1.276 26 H -0.281 1.281 27 H -0.270 1.270 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.183 0.817 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.048 0.952 40 H 0.091 0.909 41 H 0.048 0.952 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.051 0.949 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.492 15.687 2.450 17.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.062 3.938 3 C -0.365 4.365 4 C 0.222 3.778 5 N -0.471 5.471 6 C 0.276 3.724 7 O -0.472 6.472 8 C -0.152 4.152 9 C -0.135 4.135 10 C -0.109 4.109 11 C -0.191 4.191 12 C -0.017 4.017 13 O -0.306 6.306 14 C -0.016 4.016 15 C -0.189 4.189 16 N -0.189 5.189 17 H 0.292 0.708 18 N -0.125 5.125 19 C 0.137 3.863 20 C -0.595 4.595 21 H 0.087 0.913 22 C -0.135 4.135 23 N -0.522 5.522 24 Si 0.735 3.265 25 H -0.202 1.202 26 H -0.206 1.206 27 H -0.194 1.194 28 H 0.102 0.898 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.200 0.800 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.067 0.933 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.109 0.891 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.086 0.914 46 H 0.069 0.931 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.698 15.226 2.648 17.266 hybrid contribution -0.289 -0.920 -1.168 1.514 sum 7.409 14.306 1.480 16.179 Atomic orbital electron populations 1.20655 0.86366 1.05074 1.03649 1.21378 0.94543 0.85604 0.92239 1.22272 0.91221 1.00278 1.22762 1.19250 0.91813 0.82079 0.84693 1.68771 1.28095 1.05712 1.44478 1.20813 0.89365 0.86457 0.75728 1.90519 1.27543 1.79307 1.49868 1.21234 0.97091 0.93514 1.03332 1.21365 0.96095 0.92824 1.03196 1.21243 0.97417 0.94646 0.97559 1.22314 0.98075 1.00188 0.98534 1.22601 0.95244 0.82143 1.01671 1.87911 1.74710 1.29028 1.38917 1.22581 0.92914 0.99657 0.86455 1.22245 0.98430 0.95199 1.03008 1.44546 0.98891 1.05304 1.70128 0.70799 1.47935 0.92774 1.08242 1.63526 1.20057 0.96518 0.70145 0.99591 1.21371 1.47829 0.98680 0.91613 0.91261 1.24952 0.94230 0.95794 0.98484 1.69895 1.43941 1.06929 1.31439 0.86299 0.78375 0.78740 0.83046 1.20180 1.20643 1.19412 0.89805 0.89311 0.88985 0.79995 0.89891 0.90082 0.91494 0.91506 0.91161 0.90956 0.90409 0.93328 0.89074 0.93369 0.89125 0.90830 0.90936 0.91418 0.93074 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.39 9.92 36.01 0.36 -1.03 16 2 C 0.19 3.38 6.93 -81.70 -0.57 2.82 16 3 C -0.33 -6.45 9.40 -39.65 -0.37 -6.83 16 4 C 0.47 9.37 8.07 -155.18 -1.25 8.11 16 5 N -0.71 -14.13 10.51 -11.59 -0.12 -14.25 16 6 C 0.49 9.42 7.71 -11.81 -0.09 9.33 16 7 O -0.59 -12.49 12.89 5.28 0.07 -12.42 16 8 C -0.11 -1.61 5.54 -27.88 -0.15 -1.76 16 9 C -0.10 -1.24 3.98 -26.73 -0.11 -1.34 16 10 C -0.09 -0.91 2.27 -90.44 -0.21 -1.11 16 11 C -0.15 -1.46 5.10 -26.59 -0.14 -1.59 16 12 C 0.06 0.53 6.84 37.21 0.25 0.79 16 13 O -0.39 -4.13 10.77 -35.23 -0.38 -4.50 16 14 C 0.06 0.53 6.84 37.20 0.25 0.78 16 15 C -0.15 -1.39 5.42 -26.59 -0.14 -1.54 16 16 N -0.47 -8.57 7.37 31.32 0.23 -8.34 16 17 H 0.44 7.14 8.96 -182.55 -1.64 5.51 16 18 N -0.34 -6.45 3.63 -58.02 -0.21 -6.66 16 19 C 0.25 5.28 5.71 -5.19 -0.03 5.25 16 20 C -0.56 -13.09 9.39 -34.44 -0.32 -13.41 16 21 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -22.17 13.29 55.43 0.74 -21.44 16 24 Si 0.91 19.04 29.54 -169.99 -5.02 14.02 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 27 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.09 1.38 7.80 -51.93 -0.40 0.98 16 31 H 0.18 3.66 5.77 -52.49 -0.30 3.36 16 32 H 0.08 1.10 6.66 -51.93 -0.35 0.75 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.07 0.92 8.10 -51.93 -0.42 0.50 16 35 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.08 0.70 6.75 -51.93 -0.35 0.35 16 39 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 46 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.27 6.49 8.31 -40.82 -0.34 6.16 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -28.94 381.75 -10.47 -39.41 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -8.91 Total: 8.37 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -2.61 Total: 0.06 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.63 Total: -50.69 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: -0.31 Total: -16.92 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.02 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -28.94 -10.47 -39.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000329020607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.869 kcal (2) G-P(sol) polarization free energy of solvation -28.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds