Wall clock time and date at job start Tue Mar 31 2020 12:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48503 * 109.46743 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47225 * 120.00095 * 3 2 1 6 6 H 1.48501 * 109.47206 * 240.00367 * 3 2 1 7 7 C 1.38812 * 120.00308 * 179.72595 * 2 1 3 8 8 H 1.08001 * 119.99784 * 155.55712 * 7 2 1 9 9 N 1.36928 * 120.00102 * 335.56350 * 7 2 1 10 10 C 1.46926 * 120.63170 * 331.80110 * 9 7 2 11 11 C 1.52764 * 109.01135 * 233.58503 * 10 9 7 12 12 C 1.53035 * 109.37934 * 305.58582 * 11 10 9 13 13 H 1.09004 * 109.46280 * 301.21484 * 12 11 10 14 14 N 1.46503 * 109.45813 * 181.25842 * 12 11 10 15 15 C 1.34777 * 119.99848 * 84.93196 * 14 12 11 16 16 O 1.21279 * 119.99969 * 359.97438 * 15 14 12 17 17 C 1.50708 * 119.99938 * 180.02562 * 15 14 12 18 18 C 1.52998 * 109.47020 * 179.97438 * 17 15 14 19 19 C 1.53001 * 109.47030 * 179.97438 * 18 17 15 20 20 N 1.46504 * 109.47007 * 180.02562 * 19 18 17 21 21 C 1.36339 * 125.62895 * 269.68815 * 20 19 18 22 22 C 1.34855 * 108.21466 * 179.83119 * 21 20 19 23 23 C 1.40887 * 107.41831 * 0.42729 * 22 21 20 24 24 C 1.34853 * 107.41567 * 359.73771 * 23 22 21 25 25 C 1.53040 * 109.54223 * 61.23878 * 12 11 10 26 26 H 1.09001 * 109.49505 * 58.58217 * 25 12 11 27 27 O 1.42897 * 109.50012 * 178.67979 * 25 12 11 28 28 C 1.46929 * 120.63290 * 152.08028 * 9 7 2 29 29 H 0.97007 * 119.99706 * 174.24250 * 1 2 3 30 30 H 1.09003 * 109.58415 * 353.42041 * 10 9 7 31 31 H 1.09005 * 109.59243 * 113.83889 * 10 9 7 32 32 H 1.08995 * 109.56334 * 185.54985 * 11 10 9 33 33 H 1.09001 * 109.35599 * 65.49672 * 11 10 9 34 34 H 0.97003 * 120.00350 * 264.93126 * 14 12 11 35 35 H 1.09003 * 109.46707 * 299.99850 * 17 15 14 36 36 H 1.08999 * 109.47135 * 59.99717 * 17 15 14 37 37 H 1.09000 * 109.47103 * 300.00272 * 18 17 15 38 38 H 1.09001 * 109.46860 * 59.99948 * 18 17 15 39 39 H 1.09003 * 109.46709 * 299.99893 * 19 18 17 40 40 H 1.08999 * 109.47122 * 59.99754 * 19 18 17 41 41 H 1.08000 * 125.89313 * 359.96782 * 21 20 19 42 42 H 1.08003 * 126.29177 * 180.16152 * 22 21 20 43 43 H 1.07990 * 126.29476 * 179.73283 * 23 22 21 44 44 H 1.07998 * 125.88924 * 180.02562 * 24 23 22 45 45 H 0.96697 * 113.99811 * 179.83931 * 27 25 12 46 46 H 1.09001 * 109.58752 * 246.15263 * 28 9 7 47 47 H 1.08997 * 109.58400 * 6.43837 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2850 2.7464 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1038 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0057 8 1 3.0177 -1.2458 -0.3811 9 7 1.4177 -2.3325 0.5017 10 6 0.3860 -2.2413 1.5438 11 6 0.7832 -3.1355 2.7169 12 6 1.0396 -4.5560 2.2085 13 1 0.1397 -4.9369 1.7255 14 7 1.3915 -5.4220 3.3366 15 6 0.4202 -5.9978 4.0726 16 8 -0.7449 -5.7987 3.8013 17 6 0.7821 -6.8883 5.2334 18 6 -0.4956 -7.4086 5.8947 19 6 -0.1282 -8.3131 7.0728 20 7 -1.3518 -8.8119 7.7057 21 6 -2.0197 -8.2076 8.7291 22 6 -3.0947 -8.9622 9.0347 23 6 -3.0848 -10.0782 8.1748 24 6 -2.0073 -9.9600 7.3726 25 6 2.1910 -4.5389 1.2005 26 1 3.0848 -4.1351 1.6760 27 8 2.4499 -5.8699 0.7495 28 6 1.8058 -3.6602 0.0063 29 1 -0.4850 -0.8359 -0.0843 30 1 0.3015 -1.2094 1.8850 31 1 -0.5706 -2.5746 1.1413 32 1 -0.0213 -3.1519 3.4521 33 1 1.6903 -2.7448 3.1781 34 1 2.3234 -5.5811 3.5538 35 1 1.3748 -7.7299 4.8747 36 1 1.3616 -6.3196 5.9607 37 1 -1.0879 -6.5668 6.2533 38 1 -1.0754 -7.9772 5.1676 39 1 0.4638 -9.1549 6.7136 40 1 0.4518 -7.7449 7.8000 41 1 -1.7379 -7.2828 9.2105 42 1 -3.8263 -8.7522 9.8010 43 1 -3.8071 -10.8808 8.1607 44 1 -1.7144 -10.6547 6.5993 45 1 3.1679 -5.9341 0.1050 46 1 0.9674 -4.1117 -0.5242 47 1 2.6562 -3.5640 -0.6687 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100121796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:26 Heat of formation + Delta-G solvation = -24.051048 kcal Electronic energy + Delta-G solvation = -26818.523004 eV Core-core repulsion = 23002.397052 eV Total energy + Delta-G solvation = -3816.125952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.27815 -39.94299 -38.21014 -35.68124 -35.26737 -34.42780 -32.20058 -31.44461 -30.08403 -28.93271 -28.63098 -26.86108 -24.90034 -22.98375 -22.44729 -21.63250 -20.63196 -20.27985 -20.11978 -19.49234 -17.89292 -17.55384 -16.88419 -16.67578 -16.11220 -15.99802 -14.83112 -14.64419 -14.52349 -14.33683 -13.88896 -13.80397 -13.64555 -13.55510 -13.35217 -13.03421 -12.71922 -12.45578 -12.31163 -12.26374 -12.22303 -12.04674 -11.91220 -11.89260 -11.16299 -10.97221 -10.90679 -10.75047 -10.46234 -10.20666 -10.05498 -9.87267 -9.72543 -9.37068 -8.84158 -8.78100 -8.44052 -8.31957 -7.02410 -6.16146 -3.35349 2.10615 2.71540 2.72201 2.91381 3.28142 3.43801 3.46981 3.65456 4.26583 4.32751 4.48624 4.53976 4.58402 4.84926 4.88068 4.96742 5.05175 5.09334 5.14397 5.18753 5.27069 5.37267 5.40509 5.42688 5.49529 5.60909 5.68309 5.78720 5.90860 5.92939 6.12878 6.13954 6.15877 6.31643 6.33666 6.46477 6.57033 6.70991 6.83299 6.92628 7.06913 7.08571 7.20876 7.61798 7.75548 7.90404 8.33568 8.47066 8.98806 9.72865 10.15281 11.12379 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023116 B = 0.002208 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.973541 B =12679.949188 C =13367.056880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.022 4.022 3 Si 1.066 2.934 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.357 4.357 8 H 0.057 0.943 9 N -0.595 5.595 10 C 0.150 3.850 11 C -0.141 4.141 12 C 0.163 3.837 13 H 0.087 0.913 14 N -0.717 5.717 15 C 0.510 3.490 16 O -0.541 6.541 17 C -0.138 4.138 18 C -0.120 4.120 19 C 0.105 3.895 20 N -0.446 5.446 21 C -0.015 4.015 22 C -0.205 4.205 23 C -0.205 4.205 24 C -0.016 4.016 25 C 0.080 3.920 26 H 0.057 0.943 27 O -0.571 6.571 28 C 0.123 3.877 29 H 0.270 0.730 30 H 0.086 0.914 31 H 0.022 0.978 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.397 0.603 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.159 0.841 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.159 0.841 45 H 0.375 0.625 46 H 0.027 0.973 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.184 -17.671 14.266 23.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.224 4.224 3 Si 0.895 3.105 4 H -0.210 1.210 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.486 4.486 8 H 0.075 0.925 9 N -0.320 5.320 10 C 0.024 3.976 11 C -0.181 4.181 12 C 0.059 3.941 13 H 0.105 0.895 14 N -0.366 5.366 15 C 0.296 3.704 16 O -0.418 6.418 17 C -0.178 4.178 18 C -0.158 4.158 19 C -0.017 4.017 20 N -0.122 5.122 21 C -0.145 4.145 22 C -0.229 4.229 23 C -0.229 4.229 24 C -0.146 4.146 25 C 0.020 3.980 26 H 0.075 0.925 27 O -0.375 6.375 28 C -0.005 4.005 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.230 0.770 35 H 0.113 0.887 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.176 0.824 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.176 0.824 45 H 0.221 0.779 46 H 0.045 0.955 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.995 -15.856 14.359 21.600 hybrid contribution 1.201 -1.626 -0.468 2.075 sum 4.196 -17.483 13.891 22.721 Atomic orbital electron populations 1.70782 1.06618 1.30540 1.47094 1.25919 0.96534 1.01596 0.98388 0.83515 0.74791 0.75959 0.76199 1.20980 1.21989 1.21908 1.19939 0.97208 0.88294 1.43116 0.92496 1.44085 1.45891 1.00880 1.41133 1.20915 0.90580 0.99238 0.86894 1.22396 1.01520 0.93929 1.00269 1.20950 0.97825 0.90444 0.84901 0.89529 1.46080 1.09242 1.49304 1.32012 1.20489 0.85867 0.80396 0.83675 1.90731 1.18955 1.62102 1.70031 1.21569 0.99363 1.00020 0.96881 1.21700 0.97336 1.00102 0.96680 1.21909 0.84872 0.99123 0.95825 1.44140 1.21460 1.18886 1.27686 1.21845 0.96661 1.00957 0.95044 1.20900 1.00283 0.97552 1.04212 1.20894 1.00272 1.01230 1.00548 1.21833 0.96942 0.91640 1.04147 1.22744 0.96793 0.82390 0.96118 0.92517 1.86469 1.58582 1.28280 1.64195 1.21522 0.98768 0.87072 0.93137 0.91851 0.89614 0.95982 0.91726 0.92028 0.77001 0.88742 0.88758 0.90272 0.90336 0.89256 0.89220 0.82355 0.84923 0.84940 0.82394 0.77885 0.95509 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.91 12.41 55.49 0.69 -26.22 16 2 C -0.02 -0.60 4.70 -17.43 -0.08 -0.68 16 3 Si 1.07 24.53 29.99 -169.99 -5.10 19.43 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.36 -9.60 9.49 -15.06 -0.14 -9.74 16 8 H 0.06 1.52 7.94 -52.49 -0.42 1.10 16 9 N -0.59 -14.39 2.85 -172.58 -0.49 -14.88 16 10 C 0.15 3.49 4.66 -3.93 -0.02 3.47 16 11 C -0.14 -2.69 5.64 -26.83 -0.15 -2.84 16 12 C 0.16 2.82 2.12 -67.89 -0.14 2.68 16 13 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 14 N -0.72 -9.81 4.92 -53.76 -0.26 -10.07 16 15 C 0.51 7.09 7.79 -10.98 -0.09 7.00 16 16 O -0.54 -10.04 15.64 5.56 0.09 -9.95 16 17 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 18 C -0.12 -1.10 4.83 -26.73 -0.13 -1.23 16 19 C 0.10 0.72 6.09 -4.04 -0.02 0.69 16 20 N -0.45 -4.21 2.75 -117.12 -0.32 -4.53 16 21 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 22 C -0.20 -2.12 10.86 -39.78 -0.43 -2.56 16 23 C -0.20 -2.11 10.86 -39.78 -0.43 -2.55 16 24 C -0.02 -0.15 11.43 -16.75 -0.19 -0.35 16 25 C 0.08 1.33 3.14 -26.61 -0.08 1.24 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 27 O -0.57 -8.17 13.16 -35.23 -0.46 -8.64 16 28 C 0.12 2.46 6.14 -3.71 -0.02 2.44 16 29 H 0.27 8.10 6.70 -40.82 -0.27 7.82 16 30 H 0.09 2.22 6.32 -51.93 -0.33 1.89 16 31 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 32 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.40 4.29 8.60 -40.82 -0.35 3.94 16 35 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 38 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.16 1.20 8.06 -52.49 -0.42 0.78 16 42 H 0.13 1.16 8.06 -52.48 -0.42 0.74 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 44 H 0.16 1.18 8.06 -52.49 -0.42 0.75 16 45 H 0.37 3.82 9.08 45.56 0.41 4.23 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.19 7.93 -51.93 -0.41 0.78 16 LS Contribution 383.49 15.07 5.78 5.78 Total: -1.00 -34.48 383.49 -9.25 -43.73 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: -6.88 Total: 9.42 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: -2.29 Total: -4.07 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.39 Total: -55.70 kcal Atomic # 8 Polarization: -18.22 SS G_CDS: -0.38 Total: -18.59 kcal Atomic # 14 Polarization: 24.53 SS G_CDS: -5.10 Total: 19.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.48 -9.25 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.682 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds