Wall clock time and date at job start Tue Mar 31 2020 13:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35243 * 126.06596 * 2 1 4 4 C 1.40411 * 107.86360 * 180.02562 * 3 2 1 5 5 N 1.40162 * 125.97093 * 180.02562 * 4 3 2 6 6 C 1.34771 * 120.00158 * 359.97438 * 5 4 3 7 7 O 1.21295 * 119.99723 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00219 * 180.02562 * 6 5 4 9 9 H 1.09010 * 109.54335 * 60.17901 * 8 6 5 10 10 C 1.53175 * 109.54347 * 300.00283 * 8 6 5 11 11 C 1.53093 * 109.16423 * 183.15122 * 10 8 6 12 12 O 1.42904 * 109.41447 * 57.60675 * 11 10 8 13 13 C 1.42903 * 114.10111 * 298.84217 * 12 11 10 14 14 C 1.52990 * 109.48550 * 181.14170 * 13 12 11 15 15 C 1.53005 * 109.48018 * 301.17813 * 13 12 11 16 16 C 1.53090 * 109.41073 * 61.15449 * 13 12 11 17 17 N 1.31222 * 108.05260 * 359.72027 * 4 3 2 18 18 N 1.34967 * 126.07275 * 180.02562 * 2 1 3 19 19 C 1.46500 * 125.97146 * 359.97438 * 18 2 1 20 20 C 1.50706 * 109.47299 * 89.99887 * 19 18 2 21 21 H 1.07998 * 119.99501 * 359.97438 * 20 19 18 22 22 C 1.37871 * 120.00436 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00481 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99886 * 359.72901 * 22 20 19 25 25 H 1.48502 * 109.46964 * 270.27509 * 24 22 20 26 26 H 1.48505 * 109.47036 * 30.26897 * 24 22 20 27 27 H 1.48490 * 109.47395 * 150.27411 * 24 22 20 28 28 H 1.08998 * 109.46610 * 269.97519 * 1 2 3 29 29 H 1.08998 * 109.47345 * 29.97197 * 1 2 3 30 30 H 1.08997 * 109.46991 * 149.97728 * 1 2 3 31 31 H 1.07998 * 126.06790 * 0.04365 * 3 2 1 32 32 H 0.96998 * 119.99629 * 179.97438 * 5 4 3 33 33 H 1.09002 * 109.52112 * 303.05448 * 10 8 6 34 34 H 1.08996 * 109.52263 * 63.24669 * 10 8 6 35 35 H 1.09000 * 109.48197 * 177.59113 * 11 10 8 36 36 H 1.09005 * 109.47966 * 297.62480 * 11 10 8 37 37 H 1.09001 * 109.47189 * 60.00065 * 14 13 12 38 38 H 1.08997 * 109.47199 * 180.02562 * 14 13 12 39 39 H 1.09008 * 109.46988 * 300.00332 * 14 13 12 40 40 H 1.09004 * 109.47127 * 59.99585 * 15 13 12 41 41 H 1.08996 * 109.47288 * 179.97438 * 15 13 12 42 42 H 1.08993 * 109.47109 * 299.99764 * 15 13 12 43 43 H 1.09008 * 109.52451 * 182.48847 * 16 13 12 44 44 H 1.08998 * 109.52545 * 62.30455 * 16 13 12 45 45 H 1.09004 * 109.47418 * 330.00038 * 19 18 2 46 46 H 1.09001 * 109.46878 * 209.99528 * 19 18 2 47 47 H 0.96999 * 120.00235 * 179.72806 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0932 0.0000 4 6 3.6371 0.6546 -0.0006 5 7 4.7735 1.4750 -0.0003 6 6 4.6367 2.8158 0.0001 7 8 3.5301 3.3125 0.0007 8 6 5.8585 3.6979 -0.0001 9 1 6.4529 3.4974 -0.8917 10 6 6.6970 3.4122 1.2496 11 6 7.8935 4.3667 1.2809 12 8 7.4250 5.7166 1.2590 13 6 6.6746 6.0549 0.0909 14 6 6.2516 7.5234 0.1636 15 6 7.5384 5.8335 -1.1524 16 6 5.4292 5.1682 0.0117 17 7 3.6336 -0.6576 0.0051 18 7 2.3017 -1.0909 -0.0005 19 6 1.8501 -2.4845 -0.0006 20 6 1.6947 -2.9622 -1.4215 21 1 1.9103 -2.2943 -2.2423 22 6 1.2772 -4.2518 -1.6735 23 7 1.1411 -4.6685 -2.9135 24 14 0.9115 -5.4094 -0.2538 25 1 2.1486 -6.1412 0.1194 26 1 0.4290 -4.6261 0.9119 27 1 -0.1337 -6.3812 -0.6641 28 1 -0.3632 -0.0004 1.0277 29 1 -0.3634 0.8902 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 1.9719 2.1211 0.0007 32 1 5.6584 1.0778 -0.0004 33 1 6.0868 3.5636 2.1400 34 1 7.0532 2.3825 1.2216 35 1 8.4703 4.1969 2.1901 36 1 8.5249 4.1869 0.4108 37 1 7.1385 8.1545 0.2210 38 1 5.6789 7.7811 -0.7273 39 1 5.6358 7.6807 1.0492 40 1 7.8392 4.7870 -1.2042 41 1 6.9658 6.0911 -2.0433 42 1 8.4256 6.4640 -1.0954 43 1 4.8785 5.3941 -0.9015 44 1 4.7933 5.3550 0.8771 45 1 0.8916 -2.5560 0.5136 46 1 2.5850 -3.1046 0.5128 47 1 0.8512 -5.5770 -3.0908 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650192001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:27:17 Heat of formation + Delta-G solvation = -36.344899 kcal Electronic energy + Delta-G solvation = -27309.860545 eV Core-core repulsion = 23493.201491 eV Total energy + Delta-G solvation = -3816.659054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.43249 -41.49751 -40.01019 -36.41603 -35.34207 -34.79550 -34.46412 -33.08741 -32.83264 -29.45210 -28.99127 -28.21292 -27.92894 -26.20788 -24.47510 -23.69660 -22.38007 -21.29423 -20.66290 -20.14358 -19.24821 -18.12581 -17.79548 -17.23625 -16.98918 -16.88606 -16.40962 -16.29050 -15.70562 -15.53146 -15.34133 -15.03854 -14.81655 -14.54611 -14.33755 -13.98658 -13.89650 -13.73271 -13.62659 -13.38409 -13.26024 -12.95229 -12.87806 -12.83815 -12.60698 -12.58627 -12.32509 -12.28964 -12.06544 -11.84301 -11.77726 -11.59190 -11.44668 -11.16028 -10.91861 -10.87754 -10.35954 -9.63153 -9.14814 -8.41931 -6.53411 0.84004 1.26158 1.34870 1.36604 1.38325 1.46866 2.14789 2.25234 2.26848 2.85915 2.90499 3.37333 3.55086 3.71251 3.80521 3.86526 4.06136 4.06906 4.16642 4.29538 4.37806 4.42446 4.46635 4.52719 4.64288 4.71582 4.73296 4.76015 4.81766 4.83865 4.85628 4.91849 4.95314 5.01821 5.06754 5.07850 5.12246 5.14699 5.20809 5.22033 5.35180 5.42825 5.84330 5.97239 6.20721 6.34467 6.37233 6.50389 6.91438 7.06426 7.10700 8.74717 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.028202 B = 0.002442 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.598569 B =11460.929080 C =11745.776309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.090 3.910 3 C -0.300 4.300 4 C 0.273 3.727 5 N -0.623 5.623 6 C 0.524 3.476 7 O -0.546 6.546 8 C -0.094 4.094 9 H 0.128 0.872 10 C -0.147 4.147 11 C 0.059 3.941 12 O -0.391 6.391 13 C 0.111 3.889 14 C -0.139 4.139 15 C -0.180 4.180 16 C -0.119 4.119 17 N -0.354 5.354 18 N -0.343 5.343 19 C 0.242 3.758 20 C -0.551 4.551 21 H 0.023 0.977 22 C 0.022 3.978 23 N -0.937 5.937 24 Si 0.951 3.049 25 H -0.265 1.265 26 H -0.234 1.234 27 H -0.274 1.274 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.068 0.932 31 H 0.165 0.835 32 H 0.424 0.576 33 H 0.064 0.936 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.082 0.918 39 H 0.055 0.945 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.061 0.939 45 H 0.074 0.926 46 H 0.049 0.951 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.099 20.407 9.128 25.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.040 4.040 3 C -0.331 4.331 4 C 0.018 3.982 5 N -0.272 5.272 6 C 0.312 3.688 7 O -0.421 6.421 8 C -0.115 4.115 9 H 0.146 0.854 10 C -0.185 4.185 11 C -0.017 4.017 12 O -0.311 6.311 13 C 0.072 3.928 14 C -0.196 4.196 15 C -0.238 4.238 16 C -0.157 4.157 17 N -0.185 5.185 18 N -0.125 5.125 19 C 0.122 3.878 20 C -0.589 4.589 21 H 0.041 0.959 22 C -0.178 4.178 23 N -0.575 5.575 24 Si 0.772 3.228 25 H -0.190 1.190 26 H -0.157 1.157 27 H -0.199 1.199 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.262 0.738 33 H 0.083 0.917 34 H 0.117 0.883 35 H 0.129 0.871 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.067 0.933 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.995 19.615 9.164 24.751 hybrid contribution -0.386 -0.723 -0.365 0.897 sum 11.608 18.892 8.799 23.856 Atomic orbital electron populations 1.20547 0.85189 1.04452 1.04481 1.21761 0.96736 0.86380 0.99078 1.21448 0.90116 0.99943 1.21601 1.19388 0.88967 0.89282 1.00525 1.42692 1.06858 1.05218 1.72460 1.21452 0.92235 0.80921 0.74224 1.90624 1.28596 1.74229 1.48673 1.21457 0.92999 0.94366 1.02684 0.85419 1.22264 0.97899 1.02284 0.96038 1.22724 0.94326 0.80509 1.04138 1.87971 1.71770 1.29185 1.42131 1.21571 0.89800 0.95409 0.85995 1.21775 1.02140 0.92681 1.02965 1.22480 1.00750 1.03128 0.97404 1.22011 0.98184 0.91947 1.03585 1.77163 0.99742 1.09972 1.31585 1.48446 1.01899 1.07088 1.55062 1.19791 0.96420 0.74583 0.97041 1.21242 1.47795 0.98750 0.91135 0.95856 1.25834 0.93674 0.99238 0.99061 1.70031 1.46959 1.18944 1.21603 0.85675 0.79085 0.78780 0.79251 1.18990 1.15700 1.19907 0.88045 0.88342 0.91261 0.81756 0.73753 0.91694 0.88274 0.87081 0.90761 0.91116 0.89910 0.92576 0.91210 0.90600 0.91081 0.90307 0.92002 0.90860 0.93310 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.85 9.89 71.24 0.70 -2.15 16 2 C 0.09 3.73 6.92 41.39 0.29 4.02 16 3 C -0.30 -12.20 9.52 22.11 0.21 -11.99 16 4 C 0.27 10.90 8.11 133.32 1.08 11.98 16 5 N -0.62 -18.18 5.35 -307.51 -1.65 -19.83 16 6 C 0.52 14.11 7.13 87.66 0.62 14.73 16 7 O -0.55 -18.68 13.10 -3.08 -0.04 -18.72 16 8 C -0.09 -1.63 2.30 -11.42 -0.03 -1.65 16 9 H 0.13 1.64 6.62 -2.38 -0.02 1.62 16 10 C -0.15 -2.05 5.29 30.68 0.16 -1.89 16 11 C 0.06 0.70 6.52 72.01 0.47 1.17 16 12 O -0.39 -6.59 10.24 -148.98 -1.52 -8.11 16 13 C 0.11 1.64 1.11 -10.77 -0.01 1.63 16 14 C -0.14 -1.83 8.85 71.98 0.64 -1.19 16 15 C -0.18 -1.98 7.94 71.98 0.57 -1.41 16 16 C -0.12 -2.17 3.52 30.68 0.11 -2.06 16 17 N -0.35 -16.16 12.59 -54.44 -0.69 -16.84 16 18 N -0.34 -15.96 3.59 -338.43 -1.22 -17.18 16 19 C 0.24 11.50 4.88 85.64 0.42 11.91 16 20 C -0.55 -31.62 9.94 25.60 0.25 -31.37 16 21 H 0.02 1.55 8.06 -2.91 -0.02 1.53 16 22 C 0.02 1.22 5.47 84.65 0.46 1.68 16 23 N -0.94 -56.94 13.96 21.45 0.30 -56.64 16 24 Si 0.95 40.65 27.46 68.60 1.88 42.53 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 H -0.23 -8.83 6.55 99.48 0.65 -8.17 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 29 H 0.10 2.73 8.14 -2.39 -0.02 2.71 16 30 H 0.07 2.44 7.71 -2.39 -0.02 2.42 16 31 H 0.17 6.50 5.92 -2.91 -0.02 6.48 16 32 H 0.42 9.56 8.31 -92.71 -0.77 8.79 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.03 7.67 -2.39 -0.02 1.01 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.07 0.64 6.34 -2.38 -0.02 0.62 16 37 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 39 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.07 0.66 4.98 -2.38 -0.01 0.65 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.06 1.38 8.03 -2.39 -0.02 1.36 16 45 H 0.07 3.12 6.72 -2.39 -0.02 3.11 16 46 H 0.05 2.27 7.56 -2.39 -0.02 2.26 16 47 H 0.27 15.31 8.31 -92.71 -0.77 14.53 16 Total: -1.00 -76.54 372.08 3.18 -73.37 By element: Atomic # 1 Polarization: 27.86 SS G_CDS: 0.16 Total: 28.02 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.95 Total: -6.59 kcal Atomic # 7 Polarization: -107.24 SS G_CDS: -3.25 Total: -110.49 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -1.57 Total: -26.84 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 1.88 Total: 42.53 kcal Total: -76.54 3.18 -73.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650192001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.021 kcal (2) G-P(sol) polarization free energy of solvation -76.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds