Wall clock time and date at job start Tue Mar 31 2020 14:17:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30131 * 126.70045 * 2 1 4 4 O 1.20883 * 111.97997 * 179.86136 * 3 2 1 5 5 C 1.34644 * 111.46958 * 0.41405 * 4 3 2 6 6 C 1.47513 * 126.94380 * 179.77297 * 5 4 3 7 7 O 1.21583 * 119.99899 * 179.97438 * 6 5 4 8 8 N 1.34782 * 120.00062 * 359.97302 * 6 5 4 9 9 C 1.46498 * 119.99890 * 180.02562 * 8 6 5 10 10 H 1.09002 * 109.47111 * 34.99981 * 9 8 6 11 11 C 1.53000 * 109.47202 * 275.00231 * 9 8 6 12 12 C 1.53000 * 109.46944 * 155.00472 * 9 8 6 13 13 H 1.09000 * 109.49286 * 305.06314 * 12 9 8 14 14 C 1.53043 * 109.49512 * 184.99957 * 12 9 8 15 15 C 1.53032 * 109.53656 * 178.68118 * 14 12 9 16 16 C 1.53189 * 109.31406 * 61.36478 * 15 14 12 17 17 N 1.46921 * 108.77739 * 305.36222 * 16 15 14 18 18 C 1.36933 * 120.63575 * 233.58524 * 17 16 15 19 19 H 1.08006 * 120.00117 * 151.83643 * 18 17 16 20 20 C 1.38809 * 119.99824 * 331.83640 * 18 17 16 21 21 N 1.31619 * 120.00063 * 343.07119 * 20 18 17 22 22 Si 1.86805 * 119.99838 * 163.07531 * 20 18 17 23 23 H 1.48495 * 109.47447 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47209 * 120.00167 * 22 20 18 25 25 H 1.48498 * 109.46832 * 239.99773 * 22 20 18 26 26 C 1.46931 * 118.73339 * 53.60919 * 17 16 15 27 27 C 1.36818 * 106.10930 * 359.75348 * 5 4 3 28 28 C 1.50697 * 128.07401 * 179.97438 * 27 5 4 29 29 H 1.09007 * 109.47147 * 269.68694 * 1 2 3 30 30 H 1.09002 * 109.47712 * 29.68970 * 1 2 3 31 31 H 1.09000 * 109.46757 * 149.69084 * 1 2 3 32 32 H 0.97001 * 119.99483 * 0.02562 * 8 6 5 33 33 H 1.09002 * 109.47397 * 300.00687 * 11 9 8 34 34 H 1.09008 * 109.46977 * 59.99894 * 11 9 8 35 35 H 1.08996 * 109.47288 * 180.02562 * 11 9 8 36 36 H 1.08995 * 109.45789 * 298.70184 * 14 12 9 37 37 H 1.09005 * 109.46049 * 58.67660 * 14 12 9 38 38 H 1.09000 * 109.49988 * 181.31676 * 15 14 12 39 39 H 1.09001 * 109.50331 * 301.38160 * 15 14 12 40 40 H 1.09003 * 109.58775 * 65.15576 * 16 15 14 41 41 H 1.09007 * 109.59007 * 185.57439 * 16 15 14 42 42 H 0.96999 * 119.99783 * 180.02562 * 21 20 18 43 43 H 1.09003 * 109.58418 * 186.60584 * 26 17 16 44 44 H 1.08997 * 109.59274 * 66.17971 * 26 17 16 45 45 H 1.09004 * 109.47577 * 270.01420 * 28 27 5 46 46 H 1.09003 * 109.47477 * 30.02009 * 28 27 5 47 47 H 1.09011 * 109.47289 * 150.01747 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0434 0.0000 4 8 3.4538 0.7362 0.0027 5 6 3.6121 -0.6009 -0.0041 6 6 4.8871 -1.3428 -0.0081 7 8 4.8830 -2.5586 -0.0138 8 7 6.0566 -0.6728 -0.0054 9 6 7.3228 -1.4096 -0.0099 10 1 7.2131 -2.3170 -0.6039 11 6 7.7013 -1.7821 1.4250 12 6 8.4208 -0.5330 -0.6157 13 1 8.1112 -0.1935 -1.6041 14 6 9.7134 -1.3435 -0.7356 15 6 10.8032 -0.4777 -1.3717 16 6 11.0742 0.7350 -0.4758 17 7 9.8070 1.4391 -0.2368 18 6 9.6927 2.7783 -0.4986 19 1 8.7332 3.1966 -0.7649 20 6 10.8101 3.5983 -0.4217 21 7 11.8876 3.1847 0.2109 22 14 10.7844 5.2888 -1.2160 23 1 9.4654 5.5131 -1.8603 24 1 11.0119 6.3267 -0.1787 25 1 11.8557 5.3704 -2.2411 26 6 8.6648 0.6789 0.2889 27 6 2.3514 -1.1324 -0.0062 28 6 1.9559 -2.5865 -0.0138 29 1 -0.3634 -0.0056 1.0277 30 1 -0.3634 0.8927 -0.5090 31 1 -0.3633 -0.8872 -0.5186 32 1 6.0598 0.2972 -0.0005 33 1 7.8109 -0.8748 2.0191 34 1 6.9190 -2.4066 1.8566 35 1 8.6436 -2.3299 1.4217 36 1 10.0354 -1.6623 0.2557 37 1 9.5361 -2.2198 -1.3591 38 1 11.7167 -1.0626 -1.4783 39 1 10.4718 -0.1385 -2.3532 40 1 11.4917 0.4014 0.4743 41 1 11.7770 1.4053 -0.9707 42 1 12.6683 3.7579 0.2650 43 1 7.7777 1.3122 0.2984 44 1 8.8857 0.3407 1.3012 45 1 1.8601 -2.9317 -1.0433 46 1 2.7195 -3.1735 0.4966 47 1 1.0019 -2.7064 0.4998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453031.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:25 Heat of formation + Delta-G solvation = 30.912515 kcal Electronic energy + Delta-G solvation = -27794.952928 eV Core-core repulsion = 23981.210374 eV Total energy + Delta-G solvation = -3813.742553 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -45.17611 -40.00610 -38.11229 -35.82493 -35.16271 -33.21999 -32.77165 -31.11423 -30.46483 -29.11102 -28.46567 -28.03996 -25.31764 -24.68828 -23.04803 -22.14492 -21.99078 -20.56846 -20.10784 -18.77145 -18.11829 -17.98455 -16.74092 -16.10035 -16.01269 -15.04788 -14.92406 -14.51045 -14.35405 -13.95998 -13.85703 -13.84831 -13.49608 -13.30955 -13.25905 -13.11507 -13.05104 -12.67179 -12.56770 -12.38741 -12.29066 -11.84014 -11.68033 -11.33242 -11.01028 -10.94433 -10.62091 -10.48889 -10.36151 -10.18657 -10.14890 -10.08003 -9.88328 -9.70259 -9.61757 -9.40946 -9.06623 -8.47323 -6.67125 -5.80004 -3.22767 0.64328 1.80638 2.50179 2.89002 3.15950 3.36607 3.45008 3.47024 3.80683 4.22094 4.47582 4.55324 4.69109 4.93303 5.04799 5.12389 5.17515 5.26846 5.33548 5.35860 5.36787 5.39028 5.53359 5.54960 5.64052 5.66178 5.67835 5.80909 5.93729 5.99272 6.07058 6.19137 6.21816 6.28417 6.43682 6.52032 6.57720 6.68494 6.75365 6.84676 6.95722 7.31695 7.39254 7.66512 7.78979 7.86743 7.98554 8.43789 9.20187 9.83461 10.39893 11.28253 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014690 B = 0.003294 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.581663 B = 8497.847592 C =10071.532515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.006 3.994 3 N -0.342 5.342 4 O 0.120 5.880 5 C -0.088 4.088 6 C 0.605 3.395 7 O -0.517 6.517 8 N -0.703 5.703 9 C 0.149 3.851 10 H 0.086 0.914 11 C -0.166 4.166 12 C -0.114 4.114 13 H 0.074 0.926 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.169 3.831 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.900 3.100 23 H -0.277 1.277 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.150 3.850 27 C -0.122 4.122 28 C -0.084 4.084 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.410 0.590 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.046 0.954 38 H 0.049 0.951 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.086 0.914 42 H 0.253 0.747 43 H 0.048 0.952 44 H 0.027 0.973 45 H 0.079 0.921 46 H 0.090 0.910 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.332 -11.787 -0.195 20.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.152 4.152 3 N -0.043 5.043 4 O 0.047 5.953 5 C -0.154 4.154 6 C 0.388 3.612 7 O -0.394 6.394 8 N -0.353 5.353 9 C 0.045 3.955 10 H 0.104 0.896 11 C -0.224 4.224 12 C -0.135 4.135 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.182 4.182 16 C 0.044 3.956 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.202 1.202 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.023 3.977 27 C -0.127 4.127 28 C -0.141 4.141 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.246 0.754 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.104 0.896 42 H 0.063 0.937 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.097 0.903 46 H 0.109 0.891 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -17.386 -11.229 -0.170 20.698 hybrid contribution 0.037 0.767 -0.392 0.862 sum -17.349 -10.462 -0.562 20.268 Atomic orbital electron populations 1.20183 0.85378 1.04017 1.03587 1.23524 0.99236 0.88142 1.04277 1.73754 0.89338 1.24218 1.16992 1.84994 1.21257 1.21939 1.67071 1.24089 0.97144 0.83939 1.10237 1.16496 0.81085 0.86188 0.77382 1.90818 1.85999 1.11763 1.50832 1.46152 1.05294 1.11304 1.72584 1.21172 0.81465 0.95290 0.97534 0.89554 1.22278 1.01707 1.02252 0.96200 1.21981 0.93596 0.97145 1.00772 0.90775 1.21416 0.94784 0.97008 1.00566 1.22179 0.96866 0.98727 1.00400 1.20792 0.88738 0.90742 0.95350 1.44022 1.07845 1.05343 1.74068 1.19215 0.95512 0.83365 1.40202 0.91668 1.25033 0.97648 0.97710 0.99143 1.70044 1.04706 1.37122 1.42706 0.86255 0.77590 0.84208 0.78928 1.20221 1.21727 1.21585 1.21016 0.91743 0.90970 0.93989 1.21453 0.90291 0.98515 1.02433 1.20311 1.02514 0.87930 1.03319 0.89962 0.90244 0.89826 0.75405 0.91347 0.92768 0.91065 0.92169 0.93477 0.93193 0.92785 0.96428 0.89607 0.93697 0.93340 0.95553 0.90274 0.89079 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.39 36.00 0.37 -0.14 16 2 C 0.01 0.07 7.31 -82.17 -0.60 -0.53 16 3 N -0.34 -4.57 12.04 33.52 0.40 -4.17 16 4 O 0.12 1.62 11.04 15.54 0.17 1.80 16 5 C -0.09 -1.14 7.29 -36.32 -0.26 -1.40 16 6 C 0.61 8.24 7.78 -12.48 -0.10 8.14 16 7 O -0.52 -7.86 14.78 5.29 0.08 -7.78 16 8 N -0.70 -9.27 5.01 -54.86 -0.27 -9.55 16 9 C 0.15 2.04 2.35 -67.93 -0.16 1.88 16 10 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 11 C -0.17 -2.18 8.76 37.16 0.33 -1.85 16 12 C -0.11 -1.81 2.27 -90.50 -0.21 -2.02 16 13 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 14 C -0.10 -1.57 4.89 -26.69 -0.13 -1.70 16 15 C -0.14 -2.61 6.08 -26.62 -0.16 -2.78 16 16 C 0.17 3.92 5.30 -3.72 -0.02 3.90 16 17 N -0.59 -14.19 2.99 -172.32 -0.52 -14.70 16 18 C -0.25 -6.78 9.58 -15.06 -0.14 -6.92 16 19 H 0.07 1.72 7.89 -52.48 -0.41 1.30 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -25.79 11.20 55.49 0.62 -25.17 16 22 Si 0.90 21.49 29.59 -169.99 -5.03 16.46 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 C 0.15 2.88 5.26 -3.71 -0.02 2.86 16 27 C -0.12 -1.38 6.36 -103.99 -0.66 -2.04 16 28 C -0.08 -0.73 9.86 36.00 0.36 -0.38 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.41 5.25 7.11 -40.82 -0.29 4.96 16 33 H 0.07 0.94 6.23 -51.93 -0.32 0.62 16 34 H 0.05 0.70 8.14 -51.92 -0.42 0.28 16 35 H 0.07 0.89 6.59 -51.93 -0.34 0.55 16 36 H 0.06 0.93 6.63 -51.93 -0.34 0.58 16 37 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.09 2.25 6.06 -51.93 -0.31 1.93 16 42 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 43 H 0.05 0.91 6.75 -51.93 -0.35 0.56 16 44 H 0.03 0.52 6.06 -51.93 -0.31 0.21 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.09 0.92 6.73 -51.93 -0.35 0.57 16 47 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 371.88 15.07 5.60 5.60 Total: -1.00 -30.57 371.88 -7.66 -38.23 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.22 Total: 2.26 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -1.50 Total: -2.97 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.23 Total: -53.59 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: 0.25 Total: -5.99 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.57 -7.66 -38.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453031.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.143 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds