Wall clock time and date at job start Tue Mar 31 2020 14:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30125 * 126.70957 * 2 1 4 4 O 1.20886 * 111.98825 * 180.28773 * 3 2 1 5 5 C 1.34644 * 111.46233 * 359.74597 * 4 3 2 6 6 C 1.47515 * 126.93957 * 180.02562 * 5 4 3 7 7 O 1.21580 * 119.99864 * 179.97438 * 6 5 4 8 8 N 1.34777 * 120.00120 * 359.97288 * 6 5 4 9 9 C 1.46502 * 119.99934 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.46908 * 35.00294 * 9 8 6 11 11 C 1.52996 * 109.47397 * 275.00108 * 9 8 6 12 12 C 1.53002 * 109.46844 * 155.00298 * 9 8 6 13 13 H 1.08998 * 109.49694 * 60.06571 * 12 9 8 14 14 C 1.53041 * 109.49392 * 180.16308 * 12 9 8 15 15 C 1.53045 * 109.53605 * 181.31520 * 14 12 9 16 16 C 1.53189 * 109.31569 * 298.63688 * 15 14 12 17 17 N 1.46930 * 108.77453 * 54.63298 * 16 15 14 18 18 C 1.36939 * 120.62850 * 126.37362 * 17 16 15 19 19 H 1.07995 * 120.00287 * 331.84228 * 18 17 16 20 20 C 1.38817 * 119.99729 * 151.84721 * 18 17 16 21 21 N 1.31618 * 120.00108 * 343.06958 * 20 18 17 22 22 Si 1.86796 * 119.99926 * 163.07255 * 20 18 17 23 23 H 1.48495 * 109.47266 * 89.99475 * 22 20 18 24 24 H 1.48493 * 109.46958 * 209.99901 * 22 20 18 25 25 H 1.48506 * 109.46844 * 329.99698 * 22 20 18 26 26 C 1.46924 * 118.73991 * 306.39167 * 17 16 15 27 27 C 1.36824 * 106.11631 * 0.02562 * 5 4 3 28 28 C 1.50698 * 128.07706 * 179.97438 * 27 5 4 29 29 H 1.09004 * 109.47184 * 270.12531 * 1 2 3 30 30 H 1.08998 * 109.47328 * 30.12068 * 1 2 3 31 31 H 1.09005 * 109.47250 * 150.12534 * 1 2 3 32 32 H 0.97003 * 119.99898 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47425 * 179.97438 * 11 9 8 34 34 H 1.08993 * 109.47245 * 300.00593 * 11 9 8 35 35 H 1.09004 * 109.46782 * 60.00114 * 11 9 8 36 36 H 1.08994 * 109.46556 * 301.33580 * 14 12 9 37 37 H 1.09001 * 109.46007 * 61.29666 * 14 12 9 38 38 H 1.08993 * 109.49883 * 178.68090 * 15 14 12 39 39 H 1.09004 * 109.52012 * 58.60483 * 15 14 12 40 40 H 1.08997 * 109.58395 * 294.84931 * 16 15 14 41 41 H 1.08992 * 109.70738 * 174.49002 * 16 15 14 42 42 H 0.96996 * 120.00226 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.58867 * 293.82522 * 26 17 16 44 44 H 1.08994 * 109.59107 * 173.39715 * 26 17 16 45 45 H 1.09007 * 109.46899 * 89.99870 * 28 27 5 46 46 H 1.08994 * 109.46863 * 209.99779 * 28 27 5 47 47 H 1.08997 * 109.47028 * 330.00072 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2848 1.0432 0.0000 4 8 3.4540 0.7360 -0.0056 5 6 3.6120 -0.6011 -0.0047 6 6 4.8870 -1.3431 -0.0098 7 8 4.8828 -2.5589 -0.0078 8 7 6.0565 -0.6733 -0.0167 9 6 7.3227 -1.4102 -0.0212 10 1 7.2104 -2.3217 -0.6083 11 6 7.7070 -1.7726 1.4147 12 6 8.4182 -0.5380 -0.6377 13 1 8.5315 0.3731 -0.0502 14 6 9.7403 -1.3088 -0.6464 15 6 10.8439 -0.4254 -1.2328 16 6 10.4872 -0.0609 -2.6773 17 7 9.1514 0.5509 -2.6946 18 6 8.9519 1.7744 -3.2764 19 1 9.7586 2.4913 -3.3165 20 6 7.7127 2.0932 -3.8146 21 7 6.8420 1.1402 -4.0717 22 14 7.2808 3.8747 -4.1739 23 1 7.6928 4.2141 -5.5596 24 1 5.8152 4.0670 -4.0320 25 1 7.9912 4.7592 -3.2155 26 6 8.0340 -0.1748 -2.0755 27 6 2.3513 -1.1326 0.0019 28 6 1.9557 -2.5867 0.0050 29 1 -0.3634 0.0022 1.0277 30 1 -0.3634 0.8889 -0.5157 31 1 -0.3634 -0.8911 -0.5119 32 1 6.0598 0.2967 -0.0179 33 1 8.6488 -2.3212 1.4113 34 1 7.8191 -0.8611 2.0018 35 1 6.9265 -2.3939 1.8539 36 1 10.0035 -1.5899 0.3732 37 1 9.6328 -2.2072 -1.2542 38 1 11.7899 -0.9665 -1.2171 39 1 10.9355 0.4847 -0.6400 40 1 10.4846 -0.9614 -3.2914 41 1 11.2181 0.6464 -3.0691 42 1 5.9762 1.3629 -4.4481 43 1 7.8314 -1.0847 -2.6405 44 1 7.1467 0.4582 -2.0678 45 1 1.8653 -2.9365 1.0335 46 1 0.9990 -2.7041 -0.5040 47 1 2.7165 -3.1714 -0.5121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453033.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:34 Heat of formation + Delta-G solvation = 28.948823 kcal Electronic energy + Delta-G solvation = -28358.221087 eV Core-core repulsion = 24544.393382 eV Total energy + Delta-G solvation = -3813.827705 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.95381 -39.75584 -37.90549 -35.65750 -35.02805 -33.15258 -32.67154 -31.30054 -29.84557 -28.98469 -28.69981 -28.13232 -25.26773 -24.25291 -22.68084 -21.99595 -21.78384 -20.36630 -20.12202 -19.08257 -17.91544 -17.76006 -16.76575 -15.99818 -15.83530 -14.97852 -14.77862 -14.28406 -14.06017 -13.84844 -13.70047 -13.61175 -13.33350 -13.20040 -13.07739 -13.05089 -12.88153 -12.67816 -12.48135 -12.43802 -12.19928 -11.95101 -11.45690 -11.14291 -11.04519 -10.91216 -10.68459 -10.44653 -10.23718 -10.12380 -10.10774 -9.94997 -9.88860 -9.60984 -9.47115 -9.40975 -8.82635 -8.47174 -6.66049 -5.78849 -3.21583 0.87374 2.01397 2.72680 3.14263 3.37563 3.38420 3.45827 3.47000 4.00926 4.42596 4.49250 4.74895 4.88093 5.00815 5.20831 5.26144 5.30826 5.44968 5.45517 5.48583 5.50271 5.56165 5.56838 5.59564 5.70660 5.73573 5.79529 5.85816 6.03676 6.10568 6.15434 6.17460 6.28794 6.38352 6.41848 6.48957 6.64447 6.65898 6.81081 6.86887 7.01452 7.32458 7.55082 7.63789 7.79433 8.08838 8.21719 8.44504 9.21168 9.84683 10.41777 11.28850 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.010974 B = 0.004723 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.762746 B = 5927.107471 C = 7935.865682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.005 3.995 3 N -0.344 5.344 4 O 0.122 5.878 5 C -0.082 4.082 6 C 0.608 3.392 7 O -0.519 6.519 8 N -0.697 5.697 9 C 0.150 3.850 10 H 0.089 0.911 11 C -0.162 4.162 12 C -0.122 4.122 13 H 0.070 0.930 14 C -0.101 4.101 15 C -0.133 4.133 16 C 0.143 3.857 17 N -0.592 5.592 18 C -0.254 4.254 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.899 5.899 22 Si 0.897 3.103 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.279 1.279 26 C 0.179 3.821 27 C -0.125 4.125 28 C -0.082 4.082 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.409 0.591 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.051 0.949 37 H 0.056 0.944 38 H 0.050 0.950 39 H 0.057 0.943 40 H 0.016 0.984 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.017 0.983 44 H 0.089 0.911 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.724 -6.565 11.474 14.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.153 4.153 3 N -0.045 5.045 4 O 0.049 5.951 5 C -0.147 4.147 6 C 0.391 3.609 7 O -0.396 6.396 8 N -0.346 5.346 9 C 0.046 3.954 10 H 0.107 0.893 11 C -0.220 4.220 12 C -0.143 4.143 13 H 0.088 0.912 14 C -0.139 4.139 15 C -0.172 4.172 16 C 0.016 3.984 17 N -0.314 5.314 18 C -0.384 4.384 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.543 5.543 22 Si 0.727 3.273 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.204 1.204 26 C 0.053 3.947 27 C -0.130 4.130 28 C -0.139 4.139 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.245 0.755 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.076 0.924 40 H 0.034 0.966 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.035 0.965 44 H 0.107 0.893 45 H 0.095 0.905 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.097 -6.090 11.375 14.726 hybrid contribution -0.363 0.775 -0.332 0.918 sum -7.460 -5.315 11.043 14.347 Atomic orbital electron populations 1.20162 0.85516 1.03967 1.03369 1.23483 0.99142 0.88227 1.04433 1.73732 0.89390 1.24286 1.17098 1.84990 1.21175 1.22016 1.66950 1.24087 0.97171 0.83856 1.09632 1.16437 0.81068 0.86136 0.77222 1.90799 1.86004 1.11774 1.51070 1.45968 1.05185 1.11118 1.72326 1.21112 0.81924 0.95968 0.96401 0.89308 1.22223 1.01764 1.01603 0.96445 1.22185 0.93216 0.97504 1.01374 0.91177 1.21435 0.94725 0.98183 0.99564 1.21993 0.96678 0.99037 0.99525 1.20929 0.88700 0.96017 0.92711 1.44023 1.03080 1.19651 1.64652 1.19159 0.97625 0.90193 1.31409 0.91760 1.25022 0.98627 0.97313 0.98424 1.70025 1.08006 1.30312 1.46003 0.86382 0.77528 0.85201 0.78207 1.21420 1.21501 1.20438 1.20784 0.92227 0.95653 0.86023 1.21416 0.90300 0.98451 1.02859 1.20289 1.02483 0.88049 1.03077 0.90120 0.90343 0.89875 0.75550 0.91179 0.92552 0.92604 0.93034 0.92537 0.93117 0.92430 0.96590 0.92964 0.93677 0.96513 0.89284 0.90468 0.91045 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.39 36.00 0.37 -0.28 16 2 C 0.01 0.07 7.31 -82.17 -0.60 -0.53 16 3 N -0.34 -5.50 12.04 33.52 0.40 -5.09 16 4 O 0.12 1.99 11.04 15.55 0.17 2.17 16 5 C -0.08 -1.28 7.29 -36.31 -0.26 -1.55 16 6 C 0.61 10.00 7.78 -12.48 -0.10 9.90 16 7 O -0.52 -9.23 14.78 5.30 0.08 -9.15 16 8 N -0.70 -11.03 4.47 -54.86 -0.25 -11.27 16 9 C 0.15 2.33 2.16 -67.93 -0.15 2.18 16 10 H 0.09 1.51 7.58 -51.93 -0.39 1.12 16 11 C -0.16 -2.08 9.14 37.16 0.34 -1.74 16 12 C -0.12 -2.12 1.97 -90.50 -0.18 -2.30 16 13 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 14 C -0.10 -1.58 4.86 -26.69 -0.13 -1.71 16 15 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 16 C 0.14 2.94 6.52 -3.71 -0.02 2.92 16 17 N -0.59 -14.47 2.99 -172.33 -0.52 -14.99 16 18 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 19 H 0.06 1.72 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.14 4.92 -17.43 -0.09 0.05 16 21 N -0.90 -25.80 11.20 55.49 0.62 -25.18 16 22 Si 0.90 21.64 29.59 -169.99 -5.03 16.61 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.18 4.06 4.34 -3.71 -0.02 4.05 16 27 C -0.13 -1.74 6.36 -103.98 -0.66 -2.40 16 28 C -0.08 -0.91 9.86 36.00 0.35 -0.55 16 29 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.59 7.64 -51.93 -0.40 0.19 16 32 H 0.41 6.35 8.25 -40.82 -0.34 6.01 16 33 H 0.07 0.81 6.41 -51.93 -0.33 0.48 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.05 0.68 6.37 -51.93 -0.33 0.35 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.09 2.23 5.57 -51.93 -0.29 1.94 16 45 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.61 7.64 -51.93 -0.40 0.22 16 47 H 0.09 1.16 6.73 -51.93 -0.35 0.81 16 LS Contribution 375.85 15.07 5.66 5.66 Total: -1.00 -31.02 375.85 -7.73 -38.75 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -7.44 Total: 3.84 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.44 Total: -1.35 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.26 Total: -56.53 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: 0.25 Total: -6.99 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.02 -7.73 -38.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453033.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.695 kcal (2) G-P(sol) polarization free energy of solvation -31.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds