Wall clock time and date at job start Tue Mar 31 2020 14:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30127 * 126.70394 * 2 1 4 4 O 1.20894 * 111.98531 * 179.68154 * 3 2 1 5 5 C 1.34645 * 111.46196 * 0.48983 * 4 3 2 6 6 C 1.47515 * 126.94199 * 179.78780 * 5 4 3 7 7 O 1.21584 * 120.00090 * 179.68560 * 6 5 4 8 8 N 1.34779 * 120.00066 * 359.69263 * 6 5 4 9 9 C 1.46491 * 120.00053 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47456 * 324.99495 * 9 8 6 11 11 C 1.52998 * 109.47412 * 84.99771 * 9 8 6 12 12 C 1.53004 * 109.47213 * 205.00046 * 9 8 6 13 13 H 1.09008 * 109.49561 * 299.93488 * 12 9 8 14 14 C 1.53037 * 109.49728 * 179.83975 * 12 9 8 15 15 C 1.53047 * 109.53795 * 178.68240 * 14 12 9 16 16 C 1.52754 * 109.38378 * 61.23712 * 15 14 12 17 17 N 1.46932 * 109.01099 * 305.59147 * 16 15 14 18 18 C 1.36931 * 120.62964 * 233.58902 * 17 16 15 19 19 H 1.08002 * 120.00075 * 152.35895 * 18 17 16 20 20 C 1.38813 * 120.00120 * 332.34384 * 18 17 16 21 21 N 1.31621 * 120.00027 * 342.76454 * 20 18 17 22 22 Si 1.86800 * 120.00058 * 162.47463 * 20 18 17 23 23 H 1.48507 * 109.46810 * 84.99183 * 22 20 18 24 24 H 1.48499 * 109.47476 * 204.98927 * 22 20 18 25 25 H 1.48496 * 109.47213 * 324.99479 * 22 20 18 26 26 C 1.46924 * 118.73758 * 53.30692 * 17 16 15 27 27 C 1.36819 * 106.11380 * 359.53103 * 5 4 3 28 28 C 1.50702 * 128.07781 * 180.28178 * 27 5 4 29 29 H 1.09006 * 109.46792 * 270.02178 * 1 2 3 30 30 H 1.09000 * 109.47247 * 30.02279 * 1 2 3 31 31 H 1.09003 * 109.47181 * 150.02347 * 1 2 3 32 32 H 0.97008 * 119.99513 * 359.97438 * 8 6 5 33 33 H 1.09006 * 109.46644 * 59.99782 * 11 9 8 34 34 H 1.09001 * 109.47376 * 179.97438 * 11 9 8 35 35 H 1.09003 * 109.47349 * 300.00523 * 11 9 8 36 36 H 1.09002 * 109.46301 * 298.69621 * 14 12 9 37 37 H 1.09001 * 109.46592 * 58.66377 * 14 12 9 38 38 H 1.08995 * 109.49608 * 181.31623 * 15 14 12 39 39 H 1.09006 * 109.49576 * 301.37707 * 15 14 12 40 40 H 1.08997 * 109.51067 * 185.71031 * 16 15 14 41 41 H 1.08997 * 109.43181 * 65.42668 * 16 15 14 42 42 H 0.96998 * 119.99813 * 179.72089 * 21 20 18 43 43 H 1.09004 * 109.58803 * 66.43223 * 26 17 16 44 44 H 1.08993 * 109.58971 * 186.86030 * 26 17 16 45 45 H 1.09000 * 109.47541 * 89.99927 * 28 27 5 46 46 H 1.09002 * 109.47173 * 209.99870 * 28 27 5 47 47 H 1.09005 * 109.46729 * 330.00104 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4540 0.7361 0.0062 5 6 3.6121 -0.6010 0.0007 6 6 4.8871 -1.3429 0.0011 7 8 4.8829 -2.5588 0.0014 8 7 6.0566 -0.6731 0.0013 9 6 7.3228 -1.4099 0.0023 10 1 7.2132 -2.3199 0.5922 11 6 7.7010 -1.7759 -1.4343 12 6 8.4209 -0.5362 0.6120 13 1 8.5317 0.3735 0.0217 14 6 9.7430 -1.3068 0.6170 15 6 10.8491 -0.4219 1.1965 16 6 10.4996 -0.0513 2.6366 17 7 9.1628 0.5579 2.6631 18 6 8.9657 1.7829 3.2425 19 1 8.1629 2.4192 2.9004 20 6 9.7976 2.2067 4.2697 21 7 10.5419 1.3346 4.9161 22 14 9.8670 4.0160 4.7292 23 1 8.7699 4.3274 5.6805 24 1 11.1745 4.3152 5.3664 25 1 9.7114 4.8436 3.5061 26 6 8.0428 -0.1694 2.0505 27 6 2.3514 -1.1325 0.0004 28 6 1.9558 -2.5867 0.0011 29 1 -0.3633 0.0004 1.0277 30 1 -0.3634 0.8898 -0.5142 31 1 -0.3634 -0.8902 -0.5135 32 1 6.0599 0.2970 0.0008 33 1 7.8106 -0.8658 -2.0242 34 1 8.6433 -2.3237 -1.4336 35 1 6.9187 -2.3983 -1.8687 36 1 9.6383 -2.2037 1.2276 37 1 10.0020 -1.5904 -0.4032 38 1 11.7950 -0.9631 1.1781 39 1 10.9380 0.4864 0.6005 40 1 11.2327 0.6595 3.0177 41 1 10.5039 -0.9499 3.2535 42 1 11.1262 1.6313 5.6312 43 1 7.8426 -1.0779 2.6186 44 1 7.1554 0.4636 2.0450 45 1 1.8600 -2.9368 1.0289 46 1 1.0018 -2.7039 -0.5131 47 1 2.7195 -3.1711 -0.5121 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025453035.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:39 Heat of formation + Delta-G solvation = 29.086663 kcal Electronic energy + Delta-G solvation = -27836.244612 eV Core-core repulsion = 24022.422884 eV Total energy + Delta-G solvation = -3813.821728 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.14694 -39.95903 -38.00328 -35.81989 -35.18972 -33.20820 -32.74884 -31.08136 -30.48504 -29.08471 -28.59449 -28.26227 -25.28925 -24.40101 -22.79774 -21.98098 -21.92137 -20.50784 -20.31976 -19.13897 -18.09878 -17.95868 -16.76991 -16.13684 -15.99394 -15.07292 -14.75698 -14.49394 -14.24928 -13.99684 -13.82601 -13.67312 -13.42411 -13.25420 -13.22656 -13.19918 -13.03660 -12.68988 -12.59436 -12.48134 -12.27148 -11.83559 -11.60135 -11.31545 -11.13006 -10.97298 -10.66437 -10.45830 -10.32641 -10.19660 -10.15183 -10.11971 -9.89814 -9.66219 -9.57092 -9.44790 -9.03367 -8.45377 -6.66918 -5.78386 -3.20531 0.67353 1.83706 2.52285 2.92641 3.17541 3.38002 3.44823 3.47011 3.83621 4.25120 4.48156 4.57208 4.70587 4.89873 5.05012 5.14319 5.20340 5.30253 5.34431 5.35177 5.39066 5.42675 5.52390 5.56058 5.57168 5.68922 5.73177 5.77580 5.94823 6.02090 6.04077 6.07890 6.25503 6.32807 6.37718 6.45030 6.60688 6.69639 6.78387 6.86497 6.96384 7.32848 7.40655 7.67855 7.79678 7.88946 8.01122 8.44987 9.21700 9.85297 10.41638 11.29958 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013048 B = 0.003502 C = 0.002916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2145.363341 B = 7992.667159 C = 9599.001353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.007 3.993 3 N -0.343 5.343 4 O 0.120 5.880 5 C -0.087 4.087 6 C 0.607 3.393 7 O -0.516 6.516 8 N -0.702 5.702 9 C 0.147 3.853 10 H 0.091 0.909 11 C -0.162 4.162 12 C -0.112 4.112 13 H 0.074 0.926 14 C -0.100 4.100 15 C -0.142 4.142 16 C 0.168 3.832 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.154 3.846 27 C -0.122 4.122 28 C -0.084 4.084 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.408 0.592 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.086 0.914 41 H 0.016 0.984 42 H 0.253 0.747 43 H 0.017 0.983 44 H 0.051 0.949 45 H 0.080 0.920 46 H 0.071 0.929 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.837 -7.012 -13.144 20.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 N -0.044 5.044 4 O 0.047 5.953 5 C -0.153 4.153 6 C 0.390 3.610 7 O -0.392 6.392 8 N -0.352 5.352 9 C 0.043 3.957 10 H 0.109 0.891 11 C -0.221 4.221 12 C -0.133 4.133 13 H 0.092 0.908 14 C -0.138 4.138 15 C -0.181 4.181 16 C 0.043 3.957 17 N -0.313 5.313 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.730 3.270 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.027 3.973 27 C -0.127 4.127 28 C -0.141 4.141 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.244 0.756 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.070 0.930 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.105 0.895 41 H 0.034 0.966 42 H 0.064 0.936 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.099 0.901 46 H 0.090 0.910 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -13.931 -6.532 -12.979 20.129 hybrid contribution 0.030 0.784 0.378 0.871 sum -13.900 -5.747 -12.600 19.622 Atomic orbital electron populations 1.20183 0.85393 1.03903 1.03667 1.23512 0.99227 0.88155 1.04232 1.73742 0.89341 1.24230 1.17096 1.84982 1.21264 1.21966 1.67117 1.24077 0.97142 0.83900 1.10205 1.16468 0.81043 0.86186 0.77329 1.90823 1.85957 1.11762 1.50664 1.46041 1.05300 1.11077 1.72737 1.21188 0.81676 0.95949 0.96870 0.89128 1.22216 1.01967 1.01735 0.96138 1.22000 0.93660 0.97947 0.99689 0.90792 1.21442 0.94467 0.98260 0.99673 1.22104 0.96421 0.98549 1.01023 1.20711 0.88044 0.97003 0.89983 1.44017 1.02248 1.19221 1.65801 1.19152 1.15523 0.91851 1.11776 0.91740 1.25017 1.00915 0.97813 0.95831 1.70041 1.29517 1.32097 1.22958 0.86349 0.77061 0.85353 0.78217 1.21337 1.21570 1.20546 1.20874 0.91460 0.95198 0.89732 1.21452 0.90302 0.98526 1.02379 1.20315 1.02386 0.87917 1.03453 0.89889 0.90316 0.89858 0.75634 0.92455 0.90957 0.92543 0.92520 0.93047 0.93171 0.92765 0.89538 0.96551 0.93649 0.96496 0.93039 0.90143 0.90998 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.53 10.39 36.00 0.37 -0.16 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 N -0.34 -4.63 12.04 33.52 0.40 -4.23 16 4 O 0.12 1.62 11.04 15.54 0.17 1.79 16 5 C -0.09 -1.15 7.29 -36.32 -0.26 -1.41 16 6 C 0.61 8.41 7.78 -12.48 -0.10 8.31 16 7 O -0.52 -8.06 14.78 5.29 0.08 -7.98 16 8 N -0.70 -9.18 4.47 -54.86 -0.25 -9.42 16 9 C 0.15 1.99 2.16 -67.93 -0.15 1.85 16 10 H 0.09 1.35 7.58 -51.93 -0.39 0.96 16 11 C -0.16 -1.89 9.14 37.16 0.34 -1.55 16 12 C -0.11 -1.77 1.97 -90.50 -0.18 -1.95 16 13 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 14 C -0.10 -1.57 4.86 -26.69 -0.13 -1.70 16 15 C -0.14 -2.60 6.06 -26.83 -0.16 -2.76 16 16 C 0.17 3.95 5.28 -3.93 -0.02 3.93 16 17 N -0.59 -14.50 3.00 -172.59 -0.52 -15.01 16 18 C -0.25 -6.88 9.59 -15.06 -0.14 -7.03 16 19 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 20 C 0.00 0.08 4.91 -17.43 -0.09 -0.01 16 21 N -0.90 -26.11 11.18 55.49 0.62 -25.49 16 22 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 26 C 0.15 3.11 5.56 -3.71 -0.02 3.09 16 27 C -0.12 -1.42 6.36 -103.99 -0.66 -2.08 16 28 C -0.08 -0.77 9.86 36.01 0.36 -0.42 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.43 7.65 -51.93 -0.40 0.03 16 32 H 0.41 4.96 8.24 -40.82 -0.34 4.63 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.78 6.40 -51.93 -0.33 0.45 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 0.68 6.36 -51.93 -0.33 0.35 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.29 6.03 -51.93 -0.31 1.97 16 41 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.05 1.02 7.44 -51.93 -0.39 0.64 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 0.47 7.65 -51.93 -0.40 0.08 16 47 H 0.09 0.94 6.73 -51.93 -0.35 0.60 16 LS Contribution 375.79 15.07 5.66 5.66 Total: -1.00 -31.16 375.79 -7.74 -38.90 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.44 Total: 1.59 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: -1.44 Total: -2.42 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.26 Total: -54.15 kcal Atomic # 8 Polarization: -6.44 SS G_CDS: 0.25 Total: -6.19 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.16 -7.74 -38.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025453035.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.982 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds