Wall clock time and date at job start Tue Mar 31 2020 14:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.33691 * 126.27815 * 2 1 4 4 C 1.30609 * 109.00074 * 179.97438 * 3 2 1 5 5 C 1.50697 * 125.42686 * 180.02562 * 4 3 2 6 6 C 1.53008 * 109.46716 * 300.02145 * 5 4 3 7 7 C 1.52994 * 109.47173 * 60.01823 * 5 4 3 8 8 O 1.33669 * 109.15505 * 359.74948 * 4 3 2 9 9 C 1.35344 * 107.68026 * 0.39888 * 8 4 3 10 10 C 1.46725 * 126.64501 * 179.87312 * 9 8 4 11 11 O 1.21679 * 120.00087 * 183.44438 * 10 9 8 12 12 N 1.34779 * 119.99412 * 3.43747 * 10 9 8 13 13 C 1.46502 * 120.00194 * 4.92827 * 12 10 9 14 14 C 1.46503 * 119.99706 * 184.91998 * 12 10 9 15 15 C 1.53000 * 109.47364 * 96.00913 * 14 12 10 16 16 H 1.08996 * 112.96574 * 68.15711 * 15 14 12 17 17 C 1.53943 * 113.76415 * 296.48562 * 15 14 12 18 18 C 1.53946 * 86.28802 * 222.08937 * 17 15 14 19 19 N 1.47584 * 86.24066 * 23.55060 * 18 17 15 20 20 C 1.36936 * 134.49357 * 155.42132 * 19 18 17 21 21 H 1.08000 * 119.99862 * 185.75262 * 20 19 18 22 22 C 1.38819 * 119.99762 * 5.76205 * 20 19 18 23 23 N 1.31618 * 120.00320 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99652 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47109 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47016 * 119.99941 * 24 22 20 27 27 H 1.48496 * 109.46801 * 240.00093 * 24 22 20 28 28 H 1.08993 * 109.47354 * 270.02303 * 1 2 3 29 29 H 1.08998 * 109.46800 * 30.02712 * 1 2 3 30 30 H 1.09007 * 109.47194 * 150.02314 * 1 2 3 31 31 H 1.08996 * 109.47531 * 180.02562 * 5 4 3 32 32 H 1.08994 * 109.47308 * 60.00263 * 6 5 4 33 33 H 1.09008 * 109.46587 * 179.97438 * 6 5 4 34 34 H 1.08994 * 109.47235 * 299.99568 * 6 5 4 35 35 H 1.08999 * 109.47409 * 60.00611 * 7 5 4 36 36 H 1.09008 * 109.47215 * 180.02562 * 7 5 4 37 37 H 1.09004 * 109.47541 * 300.00022 * 7 5 4 38 38 H 1.09005 * 109.46590 * 275.64308 * 13 12 10 39 39 H 1.08994 * 109.47424 * 35.64083 * 13 12 10 40 40 H 1.09005 * 109.46960 * 155.65018 * 13 12 10 41 41 H 1.09000 * 109.47086 * 336.00520 * 14 12 10 42 42 H 1.09002 * 109.47047 * 216.00872 * 14 12 10 43 43 H 1.09000 * 113.74701 * 107.75004 * 17 15 14 44 44 H 1.09003 * 113.74677 * 336.43304 * 17 15 14 45 45 H 1.09005 * 113.77291 * 137.91075 * 18 17 15 46 46 H 1.09004 * 113.76811 * 269.19316 * 18 17 15 47 47 H 0.96991 * 119.99879 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6899 0.0006 5 6 4.7440 1.6030 0.0013 6 6 4.7130 2.4863 -1.2476 7 6 4.7124 2.4852 1.2508 8 8 3.5890 -0.6461 0.0064 9 6 2.3137 -1.0992 0.0007 10 6 1.8826 -2.5017 0.0014 11 8 0.6987 -2.7744 -0.0676 12 7 2.7980 -3.4879 0.0783 13 6 4.2131 -3.1606 0.2698 14 6 2.3779 -4.8873 -0.0294 15 6 2.5544 -5.3632 -1.4728 16 1 3.6000 -5.4339 -1.7723 17 6 1.6682 -4.6155 -2.4853 18 6 1.4126 -5.9916 -3.1263 19 7 1.7561 -6.5609 -1.8087 20 6 1.4549 -7.7284 -1.1597 21 1 1.7649 -7.8722 -0.1351 22 6 0.7513 -8.7273 -1.8187 23 7 0.3733 -8.5520 -3.0672 24 14 0.3411 -10.3203 -0.9335 25 1 0.8748 -10.2687 0.4514 26 1 -1.1326 -10.4972 -0.8903 27 1 0.9557 -11.4615 -1.6581 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3634 -0.8902 -0.5135 31 1 5.6558 1.0057 0.0012 32 1 3.8013 3.0837 -1.2476 33 1 5.5799 3.1472 -1.2469 34 1 4.7356 1.8579 -2.1379 35 1 4.7345 1.8560 2.1406 36 1 5.5793 3.1460 1.2511 37 1 3.8006 3.0826 1.2509 38 1 4.6691 -2.9413 -0.6957 39 1 4.2999 -2.2894 0.9189 40 1 4.7231 -4.0078 0.7284 41 1 1.3297 -4.9750 0.2564 42 1 2.9877 -5.5017 0.6329 43 1 2.2190 -3.9280 -3.1272 44 1 0.7794 -4.1657 -2.0426 45 1 0.3751 -6.1545 -3.4183 46 1 2.1212 -6.2479 -3.9139 47 1 -0.1186 -9.2498 -3.5274 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085864621.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:26 Heat of formation + Delta-G solvation = 40.165062 kcal Electronic energy + Delta-G solvation = -27885.297066 eV Core-core repulsion = 24071.955733 eV Total energy + Delta-G solvation = -3813.341333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.59860 -39.71925 -37.67627 -36.24974 -35.74190 -34.83515 -32.14014 -31.16945 -29.02420 -27.79964 -27.72769 -27.63252 -26.29697 -24.36551 -23.26099 -22.78087 -21.48359 -20.68771 -19.86416 -18.97096 -17.45741 -17.12931 -16.66847 -16.40867 -16.10054 -15.40535 -14.91341 -14.69195 -14.66894 -14.01753 -13.82057 -13.67478 -13.42380 -13.35282 -13.21537 -12.97881 -12.62532 -12.58786 -12.37852 -12.31970 -12.09471 -11.89218 -11.74369 -11.50843 -11.38187 -11.06546 -11.04219 -10.92736 -10.74933 -10.68024 -10.40702 -10.00871 -9.83591 -9.66737 -9.46630 -8.94389 -8.75908 -8.38351 -6.82508 -5.72701 -3.04571 0.75149 2.22388 2.28442 3.04343 3.15647 3.41478 3.46222 3.49095 3.63572 4.33169 4.48282 4.51081 4.56516 4.69291 4.72764 5.05935 5.18609 5.20171 5.25870 5.29035 5.38326 5.39843 5.46395 5.46914 5.51779 5.57244 5.62269 5.68894 5.76638 5.78299 5.85221 5.87523 5.92550 5.94120 6.10037 6.27207 6.36691 6.52015 6.65637 6.75958 6.79891 7.29176 7.32853 7.50096 7.55047 7.64364 8.02412 8.13114 9.08632 9.75116 10.65948 11.45076 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.025697 B = 0.002809 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.354193 B = 9964.004315 C =10152.113991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.077 3.923 3 N -0.483 5.483 4 C 0.212 3.788 5 C 0.001 3.999 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.183 6.183 9 C -0.109 4.109 10 C 0.604 3.396 11 O -0.504 6.504 12 N -0.598 5.598 13 C 0.079 3.921 14 C 0.115 3.885 15 C 0.127 3.873 16 H 0.043 0.957 17 C -0.160 4.160 18 C 0.166 3.834 19 N -0.599 5.599 20 C -0.222 4.222 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.071 0.929 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.066 0.934 46 H 0.026 0.974 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.721 22.831 6.985 26.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.047 4.047 3 N -0.212 5.212 4 C 0.006 3.994 5 C -0.018 4.018 6 C -0.202 4.202 7 C -0.201 4.201 8 O -0.070 6.070 9 C -0.164 4.164 10 C 0.391 3.609 11 O -0.381 6.381 12 N -0.330 5.330 13 C -0.064 4.064 14 C -0.008 4.008 15 C 0.019 3.981 16 H 0.060 0.940 17 C -0.199 4.199 18 C 0.041 3.959 19 N -0.326 5.326 20 C -0.350 4.350 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.096 0.904 41 H 0.116 0.884 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.102 0.898 45 H 0.084 0.916 46 H 0.044 0.956 47 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 9.825 22.893 6.984 25.873 hybrid contribution 0.375 -1.771 0.324 1.839 sum 10.200 21.122 7.308 24.568 Atomic orbital electron populations 1.20401 0.85306 1.04570 1.03581 1.22048 0.98307 0.86365 0.98027 1.70243 1.00295 1.31134 1.19540 1.26542 0.95623 0.79746 0.97475 1.19733 0.90462 0.93159 0.98459 1.21849 1.03466 0.99394 0.95489 1.21847 1.03491 0.99392 0.95418 1.84646 1.29807 1.23139 1.69376 1.23052 0.81053 0.96440 1.15816 1.16379 0.85725 0.81148 0.77687 1.90876 1.15541 1.81339 1.50369 1.47679 1.07421 1.07088 1.70780 1.21896 0.81132 1.01587 1.01776 1.21964 1.02609 0.77504 0.98698 1.22559 0.94839 0.88385 0.92294 0.93990 1.23814 0.99846 0.97684 0.98532 1.22088 0.99833 0.85912 0.88073 1.46012 1.55186 1.16258 1.15129 1.19030 1.30148 0.90879 0.94954 0.90308 1.24804 1.01327 0.98199 0.96066 1.69847 1.42928 1.33606 1.10228 0.86084 0.77837 0.83548 0.78522 1.20473 1.21705 1.21819 0.90212 0.90628 0.88270 0.88237 0.91074 0.90855 0.92066 0.92199 0.90852 0.91079 0.92342 0.91133 0.90362 0.88361 0.91040 0.93929 0.89828 0.91566 0.95610 0.93722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.01 9.91 36.01 0.36 -0.65 16 2 C 0.08 1.07 7.16 -82.47 -0.59 0.48 16 3 N -0.48 -6.22 11.26 -7.07 -0.08 -6.30 16 4 C 0.21 2.34 6.82 -12.80 -0.09 2.26 16 5 C 0.00 0.01 3.39 -91.77 -0.31 -0.30 16 6 C -0.14 -0.88 9.18 37.16 0.34 -0.54 16 7 C -0.14 -0.83 9.17 37.15 0.34 -0.49 16 8 O -0.18 -2.27 7.67 4.41 0.03 -2.24 16 9 C -0.11 -1.59 6.76 -36.84 -0.25 -1.83 16 10 C 0.60 10.00 7.13 -12.83 -0.09 9.91 16 11 O -0.50 -9.66 13.00 5.21 0.07 -9.59 16 12 N -0.60 -9.24 2.77 -183.10 -0.51 -9.74 16 13 C 0.08 0.92 9.41 59.85 0.56 1.48 16 14 C 0.11 2.09 5.49 -4.04 -0.02 2.07 16 15 C 0.13 2.65 4.59 -66.74 -0.31 2.35 16 16 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 17 C -0.16 -3.36 7.26 -25.79 -0.19 -3.54 16 18 C 0.17 4.14 7.37 -2.97 -0.02 4.12 16 19 N -0.60 -15.65 3.58 -169.73 -0.61 -16.25 16 20 C -0.22 -6.27 10.52 -15.06 -0.16 -6.43 16 21 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.93 11.54 55.49 0.64 -27.29 16 24 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.10 1.38 6.40 -51.93 -0.33 1.04 16 31 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.29 8.14 -51.92 -0.42 -0.13 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.07 0.27 8.14 -51.92 -0.42 -0.15 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.75 5.90 -51.93 -0.31 0.44 16 40 H 0.08 0.79 7.90 -51.93 -0.41 0.38 16 41 H 0.10 2.06 7.19 -51.93 -0.37 1.69 16 42 H 0.07 1.20 7.96 -51.93 -0.41 0.79 16 43 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.85 6.79 -51.93 -0.35 1.49 16 45 H 0.07 1.81 7.43 -51.93 -0.39 1.42 16 46 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 381.93 15.07 5.76 5.76 Total: -1.00 -33.60 381.93 -7.86 -41.45 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -7.62 Total: -1.80 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -0.52 Total: 8.56 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.55 Total: -59.58 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.10 Total: -11.83 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.60 -7.86 -41.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085864621.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.617 kcal (2) G-P(sol) polarization free energy of solvation -33.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.452 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds