Wall clock time and date at job start Tue Mar 31 2020 14:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33683 * 126.27483 * 2 1 4 4 C 1.30616 * 108.99968 * 180.02562 * 3 2 1 5 5 C 1.50698 * 125.42846 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47184 * 60.01912 * 5 4 3 7 7 C 1.52999 * 109.46824 * 300.02665 * 5 4 3 8 8 O 1.33661 * 109.14968 * 0.24036 * 4 3 2 9 9 C 1.35348 * 107.68759 * 359.61428 * 8 4 3 10 10 C 1.46717 * 126.64620 * 180.14503 * 9 8 4 11 11 O 1.21686 * 120.00235 * 180.28268 * 10 9 8 12 12 N 1.34782 * 119.99959 * 0.27826 * 10 9 8 13 13 C 1.46503 * 119.99862 * 180.02562 * 12 10 9 14 14 H 1.08999 * 110.64084 * 323.31126 * 13 12 10 15 15 C 1.55162 * 110.71854 * 86.45107 * 13 12 10 16 16 C 1.54911 * 101.57685 * 153.86430 * 15 13 12 17 17 N 1.47426 * 104.83389 * 322.98978 * 16 15 13 18 18 C 1.36938 * 125.64529 * 204.09521 * 17 16 15 19 19 H 1.08008 * 119.99658 * 180.02562 * 18 17 16 20 20 C 1.38808 * 120.00386 * 0.02562 * 18 17 16 21 21 N 1.31619 * 119.99848 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00171 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47030 * 90.00063 * 22 20 18 24 24 H 1.48502 * 109.47225 * 210.00340 * 22 20 18 25 25 H 1.48497 * 109.46900 * 330.00158 * 22 20 18 26 26 C 1.47018 * 108.70115 * 24.13123 * 17 16 15 27 27 H 1.08999 * 109.88073 * 239.51872 * 26 17 16 28 28 C 1.53001 * 109.87977 * 118.35640 * 26 17 16 29 29 H 1.09001 * 109.46995 * 89.97467 * 1 2 3 30 30 H 1.09004 * 109.47337 * 209.97294 * 1 2 3 31 31 H 1.09003 * 109.47298 * 329.97292 * 1 2 3 32 32 H 1.08993 * 109.47304 * 180.02562 * 5 4 3 33 33 H 1.09000 * 109.47050 * 180.02562 * 6 5 4 34 34 H 1.09001 * 109.46801 * 300.00442 * 6 5 4 35 35 H 1.09001 * 109.46998 * 60.00038 * 6 5 4 36 36 H 1.09000 * 109.47160 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.46719 * 299.99679 * 7 5 4 38 38 H 1.08993 * 109.47839 * 59.99520 * 7 5 4 39 39 H 0.97001 * 119.99991 * 359.97438 * 12 10 9 40 40 H 1.08994 * 111.00489 * 271.93832 * 15 13 12 41 41 H 1.09003 * 111.00405 * 35.79838 * 15 13 12 42 42 H 1.08999 * 110.36733 * 81.83327 * 16 15 13 43 43 H 1.09002 * 110.36605 * 204.04416 * 16 15 13 44 44 H 0.97003 * 119.99939 * 179.97438 * 21 20 18 45 45 H 1.08994 * 109.47467 * 302.18438 * 28 26 17 46 46 H 1.09004 * 109.47263 * 62.19611 * 28 26 17 47 47 H 1.09002 * 109.46823 * 182.18946 * 28 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0777 0.0000 4 6 3.5452 0.6899 -0.0006 5 6 4.7440 1.6030 -0.0013 6 6 4.7136 2.4857 1.2481 7 6 4.7117 2.4860 -1.2503 8 8 3.5889 -0.6460 -0.0062 9 6 2.3136 -1.0992 -0.0006 10 6 1.8826 -2.5017 -0.0008 11 8 0.6966 -2.7737 -0.0005 12 7 2.8004 -3.4887 -0.0013 13 6 2.3700 -4.8891 -0.0021 14 1 1.4753 -5.0164 0.6073 15 6 2.1228 -5.3867 -1.4509 16 6 2.3653 -6.9094 -1.3022 17 7 3.4765 -7.0226 -0.3401 18 6 4.3378 -8.0822 -0.2366 19 1 5.1229 -8.0695 0.5050 20 6 4.2018 -9.1726 -1.0847 21 7 3.2454 -9.1878 -1.9888 22 14 5.3762 -10.6183 -0.9431 23 1 4.8266 -11.6104 0.0154 24 1 5.5407 -11.2548 -2.2746 25 1 6.6951 -10.1388 -0.4574 26 6 3.5063 -5.8098 0.4904 27 1 4.4666 -5.3066 0.3773 28 6 3.2784 -6.1783 1.9578 29 1 -0.3633 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8898 0.5143 32 1 5.6557 1.0057 -0.0021 33 1 5.5805 3.1465 1.2473 34 1 3.8018 3.0830 1.2488 35 1 4.7365 1.8567 2.1380 36 1 5.5785 3.1468 -1.2507 37 1 4.7333 1.8572 -2.1404 38 1 3.8000 3.0833 -1.2497 39 1 3.7459 -3.2719 -0.0020 40 1 1.0991 -5.1828 -1.7646 41 1 2.8380 -4.9431 -2.1436 42 1 1.4735 -7.3991 -0.9111 43 1 2.6461 -7.3443 -2.2615 44 1 3.1506 -9.9496 -2.5818 45 1 2.3255 -6.6978 2.0582 46 1 4.0844 -6.8282 2.2987 47 1 3.2630 -5.2712 2.5620 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088909151.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:12 Heat of formation + Delta-G solvation = -1.053680 kcal Electronic energy + Delta-G solvation = -27483.021342 eV Core-core repulsion = 23667.892631 eV Total energy + Delta-G solvation = -3815.128712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.62173 -39.67396 -37.63288 -36.22757 -35.39978 -34.06571 -32.11700 -31.13352 -30.41551 -28.92836 -27.76624 -27.63433 -25.17548 -24.13577 -23.99290 -22.03360 -20.89020 -20.62964 -20.20363 -19.80835 -17.95452 -17.10484 -16.82973 -16.45630 -16.04564 -14.98975 -14.76551 -14.67696 -14.58597 -14.16785 -13.94965 -13.60134 -13.47246 -13.35669 -13.16767 -12.84148 -12.62344 -12.48309 -12.18004 -12.11975 -12.05496 -11.75123 -11.61730 -11.52139 -11.17988 -11.11265 -10.94015 -10.89833 -10.86406 -10.60526 -10.49789 -10.12232 -9.99795 -9.79977 -9.60277 -9.06551 -8.71407 -8.64744 -6.91310 -5.68540 -3.11683 0.69676 2.19446 2.23352 3.09268 3.16992 3.37799 3.42824 3.44713 3.63214 4.36566 4.45271 4.50678 4.56004 4.65047 4.83236 5.15230 5.20340 5.25074 5.30219 5.37999 5.38168 5.42842 5.48132 5.50241 5.55643 5.58077 5.70339 5.74982 5.76457 5.77719 5.87114 6.07210 6.15185 6.20742 6.25540 6.28952 6.46678 6.54383 6.66731 6.80511 7.02789 7.34258 7.48139 7.59087 7.59712 7.81858 8.12367 8.31676 9.17305 9.78041 10.41525 11.34871 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019716 B = 0.002756 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1419.823968 B =10155.558483 C =10818.302160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.077 3.923 3 N -0.483 5.483 4 C 0.221 3.779 5 C 0.000 4.000 6 C -0.144 4.144 7 C -0.144 4.144 8 O -0.187 6.187 9 C -0.114 4.114 10 C 0.607 3.393 11 O -0.515 6.515 12 N -0.701 5.701 13 C 0.134 3.866 14 H 0.096 0.904 15 C -0.153 4.153 16 C 0.153 3.847 17 N -0.595 5.595 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.010 4.010 21 N -0.921 5.921 22 Si 0.915 3.085 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.156 3.844 27 H 0.036 0.964 28 C -0.156 4.156 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.402 0.598 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.016 0.984 43 H 0.110 0.890 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.055 0.945 47 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.370 22.823 4.045 23.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.047 4.047 3 N -0.213 5.213 4 C 0.015 3.985 5 C -0.020 4.020 6 C -0.201 4.201 7 C -0.202 4.202 8 O -0.074 6.074 9 C -0.169 4.169 10 C 0.392 3.608 11 O -0.393 6.393 12 N -0.351 5.351 13 C 0.030 3.970 14 H 0.114 0.886 15 C -0.193 4.193 16 C 0.028 3.972 17 N -0.320 5.320 18 C -0.349 4.349 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.048 3.952 27 H 0.054 0.946 28 C -0.215 4.215 29 H 0.100 0.900 30 H 0.115 0.885 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.237 0.763 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.034 0.966 43 H 0.128 0.872 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.074 0.926 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 0.445 22.951 3.932 23.290 hybrid contribution 1.312 -1.427 0.116 1.942 sum 1.757 21.524 4.048 21.972 Atomic orbital electron populations 1.20381 0.85273 1.04290 1.03718 1.22054 0.98327 0.86362 0.97958 1.70252 1.00260 1.31024 1.19741 1.26535 0.95660 0.79215 0.97114 1.19768 0.90489 0.93156 0.98542 1.21849 1.03508 0.99380 0.95406 1.21851 1.03506 0.99390 0.95439 1.84458 1.29904 1.23675 1.69343 1.23062 0.81171 0.96496 1.16146 1.16287 0.85962 0.81139 0.77449 1.90851 1.15658 1.81726 1.51096 1.46017 1.09514 1.06519 1.73012 1.22277 0.98392 0.77561 0.98751 0.88607 1.23423 1.00706 1.00510 0.94640 1.21957 0.89478 0.88258 0.97498 1.44484 1.34346 1.16223 1.36948 1.19019 1.07175 0.94057 1.14687 0.90438 1.24790 0.98790 0.98473 0.98484 1.69791 1.33496 1.30595 1.23014 0.86074 0.80092 0.82404 0.76916 1.21614 1.21656 1.20709 1.20974 0.94438 0.88820 0.91005 0.94605 1.22247 1.02161 0.99841 0.97268 0.90040 0.88540 0.90640 0.88075 0.90767 0.91079 0.92111 0.90761 0.92078 0.91078 0.76299 0.91714 0.91944 0.96629 0.87249 0.93649 0.92787 0.92595 0.94339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 9.87 36.01 0.36 -0.56 16 2 C 0.08 1.05 7.16 -82.47 -0.59 0.46 16 3 N -0.48 -6.17 11.26 -7.07 -0.08 -6.25 16 4 C 0.22 2.51 6.82 -12.80 -0.09 2.42 16 5 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 6 C -0.14 -0.88 9.18 37.16 0.34 -0.54 16 7 C -0.14 -0.90 9.17 37.16 0.34 -0.56 16 8 O -0.19 -2.43 10.57 4.42 0.05 -2.38 16 9 C -0.11 -1.64 7.18 -36.84 -0.26 -1.90 16 10 C 0.61 9.67 7.79 -12.83 -0.10 9.57 16 11 O -0.52 -9.25 14.52 5.20 0.08 -9.17 16 12 N -0.70 -10.90 5.20 -53.32 -0.28 -11.18 16 13 C 0.13 2.43 2.76 -66.09 -0.18 2.25 16 14 H 0.10 1.82 7.41 -51.93 -0.38 1.43 16 15 C -0.15 -3.03 6.77 -24.58 -0.17 -3.20 16 16 C 0.15 3.69 5.89 -2.53 -0.01 3.68 16 17 N -0.59 -14.68 3.13 -162.58 -0.51 -15.18 16 18 C -0.22 -5.96 9.89 -15.06 -0.15 -6.11 16 19 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 21 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 22 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.16 3.11 3.48 -66.96 -0.23 2.87 16 27 H 0.04 0.70 7.69 -51.93 -0.40 0.30 16 28 C -0.16 -2.86 9.14 37.16 0.34 -2.52 16 29 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.10 1.21 6.47 -51.93 -0.34 0.87 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.40 5.58 8.11 -40.82 -0.33 5.24 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 44 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 45 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 46 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 383.31 15.07 5.78 5.78 Total: -1.00 -30.96 383.31 -7.89 -38.85 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.64 Total: 3.53 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: -0.82 Total: 5.19 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.31 Total: -58.49 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: 0.12 Total: -11.56 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.96 -7.89 -38.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088909151.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.796 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds