Wall clock time and date at job start Tue Mar 31 2020 12:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35314 * 126.66715 * 2 1 4 4 C 1.42271 * 103.92260 * 180.02562 * 3 2 1 5 5 C 1.48336 * 126.93824 * 180.02562 * 4 3 2 6 6 O 1.21494 * 119.99819 * 0.26471 * 5 4 3 7 7 N 1.34772 * 119.99707 * 179.97438 * 5 4 3 8 8 C 1.46501 * 119.99729 * 179.97438 * 7 5 4 9 9 H 1.09003 * 110.21233 * 33.06654 * 8 7 5 10 10 C 1.52524 * 110.25366 * 270.97706 * 8 7 5 11 11 C 1.46233 * 114.27915 * 151.61755 * 10 8 7 12 12 N 1.50168 * 107.53521 * 58.41448 * 11 10 8 13 13 C 1.36929 * 120.54215 * 109.56292 * 12 11 10 14 14 H 1.08000 * 120.00639 * 156.71102 * 13 12 11 15 15 C 1.38816 * 119.99847 * 336.70914 * 13 12 11 16 16 N 1.31619 * 120.00124 * 340.41471 * 15 13 12 17 17 Si 1.86799 * 120.00269 * 160.41567 * 15 13 12 18 18 H 1.48501 * 109.46974 * 59.99701 * 17 15 13 19 19 H 1.48493 * 109.47479 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.47227 * 300.00362 * 17 15 13 21 21 C 1.43437 * 118.92054 * 289.58944 * 12 11 10 22 22 C 1.54899 * 116.07999 * 91.56628 * 21 12 11 23 23 C 1.53002 * 109.35745 * 198.43164 * 22 21 12 24 24 C 1.53003 * 109.25146 * 78.77311 * 22 21 12 25 25 C 1.50126 * 110.25269 * 154.99363 * 8 7 5 26 26 N 1.30985 * 106.12331 * 0.25660 * 4 3 2 27 27 O 1.20906 * 111.43841 * 359.54221 * 26 4 3 28 28 H 1.09003 * 109.47053 * 90.00011 * 1 2 3 29 29 H 1.08998 * 109.47453 * 210.00061 * 1 2 3 30 30 H 1.09003 * 109.47348 * 330.00396 * 1 2 3 31 31 H 1.07999 * 128.04125 * 0.02562 * 3 2 1 32 32 H 0.96997 * 120.00801 * 359.97438 * 7 5 4 33 33 H 1.09002 * 108.52096 * 272.86596 * 10 8 7 34 34 H 1.09005 * 108.52042 * 30.37547 * 10 8 7 35 35 H 1.09004 * 109.84970 * 298.90038 * 11 10 8 36 36 H 1.09008 * 109.84373 * 177.91833 * 11 10 8 37 37 H 0.97002 * 120.00313 * 179.97438 * 16 15 13 38 38 H 1.08994 * 108.16403 * 329.84754 * 21 12 11 39 39 H 1.09000 * 107.99670 * 213.15294 * 21 12 11 40 40 H 1.08999 * 109.47039 * 180.68179 * 23 22 21 41 41 H 1.08995 * 109.47173 * 300.67975 * 23 22 21 42 42 H 1.08993 * 109.46847 * 60.68662 * 23 22 21 43 43 H 1.08994 * 109.47030 * 299.38910 * 24 22 21 44 44 H 1.09010 * 109.46834 * 59.38462 * 24 22 21 45 45 H 1.08999 * 109.47162 * 179.38337 * 24 22 21 46 46 H 1.08997 * 109.20767 * 337.00694 * 25 8 7 47 47 H 1.09006 * 109.20490 * 96.35613 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5353 -0.0006 5 6 4.9076 1.2841 -0.0003 6 8 4.9008 2.4990 0.0053 7 7 6.0784 0.6167 -0.0005 8 6 7.3431 1.3562 -0.0008 9 1 7.2356 2.2863 0.5572 10 6 7.7863 1.6436 -1.4316 11 6 8.5946 2.8533 -1.5792 12 7 9.8055 2.6978 -0.7049 13 6 11.0441 2.5113 -1.2583 14 1 11.9305 2.7695 -0.6979 15 6 11.1604 1.9904 -2.5397 16 7 10.1573 1.3261 -3.0737 17 14 12.7404 2.2320 -3.5064 18 1 13.8724 1.6192 -2.7659 19 1 12.6106 1.5853 -4.8368 20 1 12.9943 3.6842 -3.6851 21 6 9.6437 2.7471 0.7195 22 6 9.4090 1.3885 1.4256 23 6 8.8111 1.6344 2.8124 24 6 10.7456 0.6584 1.5718 25 6 8.4361 0.5167 0.5945 26 7 3.4761 -0.7658 -0.0065 27 8 2.3072 -1.0750 -0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8899 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 2.0302 2.1271 0.0004 32 1 6.0839 -0.3533 -0.0004 33 1 8.3659 0.7937 -1.7919 34 1 6.8983 1.7422 -2.0560 35 1 8.0193 3.7236 -1.2633 36 1 8.9012 2.9689 -2.6188 37 1 10.2384 0.9624 -3.9693 38 1 8.7975 3.3967 0.9430 39 1 10.5390 3.2007 1.1447 40 1 8.6565 0.6800 3.3157 41 1 9.4946 2.2480 3.3991 42 1 7.8564 2.1501 2.7101 43 1 11.1709 0.4781 0.5846 44 1 11.4320 1.2708 2.1568 45 1 10.5862 -0.2935 2.0782 46 1 7.9942 -0.2424 1.2399 47 1 8.9896 0.0276 -0.2072 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089303549.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:52 Heat of formation + Delta-G solvation = 46.837974 kcal Electronic energy + Delta-G solvation = -28480.420689 eV Core-core repulsion = 24667.368716 eV Total energy + Delta-G solvation = -3813.051974 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -45.19884 -39.80131 -38.16766 -34.70909 -34.38487 -34.25549 -33.51630 -31.42517 -30.53205 -28.09415 -27.59558 -26.66041 -25.50390 -24.93821 -23.27567 -22.76770 -21.46700 -19.97238 -19.92789 -18.07632 -17.96655 -17.49816 -16.71579 -16.63931 -15.71775 -15.08099 -14.59536 -14.45634 -14.11568 -13.95549 -13.90004 -13.62190 -13.59922 -13.41850 -13.16934 -12.73436 -12.58271 -12.35109 -11.88506 -11.65445 -11.60446 -11.44085 -11.22605 -10.88033 -10.83003 -10.68325 -10.61131 -10.52713 -10.30486 -10.07104 -10.02440 -9.76172 -9.64848 -9.61519 -9.48058 -9.23309 -8.68160 -8.31465 -6.68440 -5.76724 -3.15061 1.04147 1.56099 2.76487 3.16466 3.31401 3.39916 3.46348 3.48450 3.94371 4.38572 4.52894 4.75518 4.94630 5.03098 5.13044 5.24508 5.32159 5.40742 5.46831 5.50897 5.54139 5.62669 5.75391 5.88146 6.01240 6.07651 6.16782 6.29205 6.31978 6.38071 6.47202 6.58066 6.62234 6.73606 6.80751 6.91926 6.99468 7.05245 7.08395 7.24203 7.26544 7.57554 7.68671 7.75736 7.92651 7.97682 8.33117 8.45072 9.21197 9.89315 10.42987 11.30323 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.018353 B = 0.003388 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1525.265805 B = 8261.431790 C = 9030.553628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.039 4.039 3 C -0.185 4.185 4 C -0.018 4.018 5 C 0.592 3.408 6 O -0.523 6.523 7 N -0.700 5.700 8 C 0.145 3.855 9 H 0.089 0.911 10 C -0.133 4.133 11 C 0.169 3.831 12 N -0.585 5.585 13 C -0.243 4.243 14 H 0.067 0.933 15 C 0.002 3.998 16 N -0.901 5.901 17 Si 0.898 3.102 18 H -0.285 1.285 19 H -0.293 1.293 20 H -0.286 1.286 21 C 0.166 3.834 22 C -0.089 4.089 23 C -0.136 4.136 24 C -0.128 4.128 25 C -0.102 4.102 26 N -0.334 5.334 27 O 0.118 5.882 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.180 0.820 32 H 0.400 0.600 33 H 0.104 0.896 34 H 0.028 0.972 35 H 0.009 0.991 36 H 0.092 0.908 37 H 0.252 0.748 38 H 0.029 0.971 39 H 0.034 0.966 40 H 0.043 0.957 41 H 0.049 0.951 42 H 0.047 0.953 43 H 0.072 0.928 44 H 0.042 0.958 45 H 0.033 0.967 46 H 0.042 0.958 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.635 -4.029 7.824 18.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.103 4.103 3 C -0.207 4.207 4 C -0.177 4.177 5 C 0.375 3.625 6 O -0.398 6.398 7 N -0.350 5.350 8 C 0.042 3.958 9 H 0.107 0.893 10 C -0.173 4.173 11 C 0.045 3.955 12 N -0.305 5.305 13 C -0.372 4.372 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.546 5.546 17 Si 0.728 3.272 18 H -0.212 1.212 19 H -0.219 1.219 20 H -0.213 1.213 21 C 0.036 3.964 22 C -0.093 4.093 23 C -0.194 4.194 24 C -0.186 4.186 25 C -0.140 4.140 26 N -0.035 5.035 27 O 0.043 5.957 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.197 0.803 32 H 0.235 0.765 33 H 0.122 0.878 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.052 0.948 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.066 0.934 43 H 0.091 0.909 44 H 0.061 0.939 45 H 0.052 0.948 46 H 0.060 0.940 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.673 -4.185 7.620 17.923 hybrid contribution 0.430 0.115 -0.580 0.732 sum -15.242 -4.070 7.040 17.276 Atomic orbital electron populations 1.20350 0.83491 1.04796 1.04310 1.24486 0.96516 0.85576 1.03673 1.22458 0.89843 1.01527 1.06884 1.23727 0.97199 0.90026 1.06790 1.16867 0.81589 0.86482 0.77553 1.90797 1.86614 1.12386 1.50007 1.46181 1.05697 1.10483 1.72620 1.20631 0.80228 0.95400 0.99536 0.89302 1.21358 0.98703 1.04658 0.92534 1.20100 0.85619 0.92224 0.97574 1.44256 1.04506 1.82692 0.99061 1.19129 0.84437 1.35102 0.98554 0.91563 1.24870 0.97162 0.98063 0.99493 1.69947 1.31569 1.36963 1.16090 0.86437 0.83486 0.77826 0.79413 1.21150 1.21856 1.21279 1.20526 0.98077 0.92115 0.85670 1.21930 0.94379 0.99336 0.93621 1.21848 1.00153 1.00454 0.96901 1.21743 0.96356 0.98045 1.02421 1.21794 0.95437 0.97109 0.99662 1.74175 0.97077 1.15779 1.16503 1.84769 1.11191 1.33469 1.66273 0.89228 0.89679 0.88831 0.80267 0.76549 0.87804 0.95309 0.97259 0.88996 0.93770 0.95292 0.94755 0.93743 0.93208 0.93407 0.90878 0.93863 0.94822 0.93971 0.89855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.44 36.00 0.38 0.07 16 2 C -0.04 -0.36 7.47 -35.35 -0.26 -0.63 16 3 C -0.18 -2.14 10.92 -39.08 -0.43 -2.57 16 4 C -0.02 -0.26 7.19 -82.52 -0.59 -0.86 16 5 C 0.59 10.42 7.85 -12.11 -0.09 10.33 16 6 O -0.52 -10.66 16.60 5.37 0.09 -10.57 16 7 N -0.70 -12.00 4.95 -56.23 -0.28 -12.27 16 8 C 0.14 2.77 2.16 -69.60 -0.15 2.62 16 9 H 0.09 1.84 5.16 -51.93 -0.27 1.58 16 10 C -0.13 -2.93 4.74 -30.19 -0.14 -3.07 16 11 C 0.17 4.03 5.25 -5.21 -0.03 4.00 16 12 N -0.58 -14.00 2.60 -175.08 -0.46 -14.45 16 13 C -0.24 -6.31 8.94 -15.06 -0.13 -6.44 16 14 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 15 C 0.00 0.05 4.91 -17.43 -0.09 -0.03 16 16 N -0.90 -24.36 9.42 55.49 0.52 -23.83 16 17 Si 0.90 21.30 29.60 -169.99 -5.03 16.27 16 18 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 19 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 C 0.17 3.44 4.00 -4.66 -0.02 3.42 16 22 C -0.09 -1.60 0.76 -152.54 -0.12 -1.72 16 23 C -0.14 -2.11 8.21 37.16 0.30 -1.80 16 24 C -0.13 -2.31 8.28 37.16 0.31 -2.01 16 25 C -0.10 -1.89 4.15 -27.19 -0.11 -2.00 16 26 N -0.33 -4.66 11.84 33.29 0.39 -4.26 16 27 O 0.12 1.35 11.18 17.24 0.19 1.55 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 32 H 0.40 6.21 8.29 -40.82 -0.34 5.88 16 33 H 0.10 2.55 5.29 -51.93 -0.27 2.27 16 34 H 0.03 0.64 8.02 -51.93 -0.42 0.22 16 35 H 0.01 0.22 8.12 -51.93 -0.42 -0.20 16 36 H 0.09 2.43 6.05 -51.92 -0.31 2.12 16 37 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.03 0.59 6.69 -51.93 -0.35 0.25 16 39 H 0.03 0.72 7.81 -51.93 -0.41 0.31 16 40 H 0.04 0.64 8.13 -51.93 -0.42 0.21 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.75 7.57 -51.93 -0.39 0.36 16 43 H 0.07 1.54 7.45 -51.93 -0.39 1.15 16 44 H 0.04 0.73 8.12 -51.92 -0.42 0.31 16 45 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.04 0.70 7.68 -51.93 -0.40 0.30 16 47 H 0.08 1.79 6.65 -51.93 -0.35 1.44 16 LS Contribution 368.76 15.07 5.56 5.56 Total: -1.00 -29.44 368.76 -7.43 -36.87 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: -7.24 Total: 5.85 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -1.18 Total: -0.70 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: 0.18 Total: -54.82 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: 0.28 Total: -9.02 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.44 -7.43 -36.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089303549.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.709 kcal (2) G-P(sol) polarization free energy of solvation -29.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.871 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds