Wall clock time and date at job start Tue Mar 31 2020 14:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.33691 * 126.27211 * 2 1 4 4 C 1.30623 * 108.99430 * 179.97438 * 3 2 1 5 5 O 1.33660 * 109.15043 * 359.72401 * 4 3 2 6 6 C 1.35347 * 107.68620 * 0.43966 * 5 4 3 7 7 C 1.46724 * 126.64317 * 179.83956 * 6 5 4 8 8 O 1.21681 * 120.00203 * 179.68839 * 7 6 5 9 9 N 1.34777 * 119.99866 * 359.68539 * 7 6 5 10 10 C 1.46500 * 120.00052 * 180.02562 * 9 7 6 11 11 H 1.09008 * 110.21320 * 33.06371 * 10 9 7 12 12 C 1.52653 * 110.21641 * 270.99542 * 10 9 7 13 13 C 1.46236 * 114.20216 * 151.65679 * 12 10 9 14 14 N 1.50167 * 107.58796 * 58.37547 * 13 12 10 15 15 C 1.36930 * 120.54283 * 109.54036 * 14 13 12 16 16 H 1.08005 * 119.99615 * 320.02336 * 15 14 13 17 17 C 1.38809 * 120.00635 * 140.02596 * 15 14 13 18 18 N 1.31616 * 120.00201 * 156.57498 * 17 15 14 19 19 Si 1.86797 * 119.99825 * 336.57189 * 17 15 14 20 20 H 1.48504 * 109.47232 * 95.56530 * 19 17 15 21 21 H 1.48506 * 109.47334 * 215.56668 * 19 17 15 22 22 H 1.48501 * 109.47319 * 335.57118 * 19 17 15 23 23 C 1.43442 * 118.92468 * 289.55571 * 14 13 12 24 24 C 1.54905 * 116.07675 * 91.56755 * 23 14 13 25 25 C 1.52991 * 109.36057 * 78.84636 * 24 23 14 26 26 C 1.53001 * 109.35849 * 198.57413 * 24 23 14 27 27 C 1.50123 * 110.25159 * 154.99858 * 10 9 7 28 28 H 1.09003 * 109.47102 * 270.04734 * 1 2 3 29 29 H 1.09006 * 109.47207 * 30.04135 * 1 2 3 30 30 H 1.08993 * 109.47230 * 150.04096 * 1 2 3 31 31 H 1.07998 * 125.42130 * 179.97438 * 4 3 2 32 32 H 0.96999 * 120.00073 * 359.97438 * 9 7 6 33 33 H 1.09002 * 108.62014 * 30.40033 * 12 10 9 34 34 H 1.09002 * 108.51033 * 272.83636 * 12 10 9 35 35 H 1.08998 * 109.84667 * 298.83465 * 13 12 10 36 36 H 1.09005 * 109.84971 * 177.91021 * 13 12 10 37 37 H 0.97006 * 120.00459 * 179.97438 * 18 17 15 38 38 H 1.08994 * 108.15996 * 213.27922 * 23 14 13 39 39 H 1.09001 * 108.16016 * 329.85216 * 23 14 13 40 40 H 1.08995 * 109.47292 * 59.99776 * 25 24 23 41 41 H 1.09004 * 109.47247 * 180.02562 * 25 24 23 42 42 H 1.09007 * 109.47248 * 299.99623 * 25 24 23 43 43 H 1.08993 * 109.47123 * 59.99481 * 26 24 23 44 44 H 1.08996 * 109.47061 * 179.97438 * 26 24 23 45 45 H 1.09007 * 109.46589 * 299.99971 * 26 24 23 46 46 H 1.08997 * 109.20918 * 96.31558 * 27 10 9 47 47 H 1.08995 * 109.20915 * 336.99662 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6899 0.0006 5 8 3.5889 -0.6460 0.0070 6 6 2.3136 -1.0991 0.0007 7 6 1.8826 -2.5016 0.0010 8 8 0.6966 -2.7737 0.0006 9 7 2.8004 -3.4886 0.0017 10 6 2.3700 -4.8890 0.0015 11 1 1.4404 -4.9973 -0.5573 12 6 2.1903 -5.3859 1.4337 13 6 1.1979 -6.4502 1.5789 14 7 1.6272 -7.5932 0.7048 15 6 2.0917 -8.7563 1.2584 16 1 2.7401 -8.7222 2.1215 17 6 1.7293 -9.9791 0.7105 18 7 2.4866 -11.0378 0.9050 19 14 0.1666 -10.1220 -0.3030 20 1 0.4976 -9.9886 -1.7445 21 1 -0.4618 -11.4454 -0.0598 22 1 -0.7782 -9.0457 0.0895 23 6 1.5433 -7.4469 -0.7197 24 6 2.8126 -6.9073 -1.4248 25 6 3.8305 -8.0398 -1.5731 26 6 2.4370 -6.3783 -2.8104 27 6 3.4380 -5.7607 -0.5929 28 1 -0.3633 0.0008 1.0277 29 1 -0.3634 0.8897 -0.5145 30 1 -0.3633 -0.8903 -0.5132 31 1 4.4043 1.3443 0.0003 32 1 3.7458 -3.2718 0.0017 33 1 1.8899 -4.5449 2.0587 34 1 3.1499 -5.7557 1.7947 35 1 0.2193 -6.0894 1.2622 36 1 1.1536 -6.7756 2.6183 37 1 2.2332 -11.8925 0.5224 38 1 1.3049 -8.4205 -1.1477 39 1 0.7173 -6.7718 -0.9438 40 1 3.3965 -8.8429 -2.1687 41 1 4.7248 -7.6620 -2.0687 42 1 4.0959 -8.4214 -0.5871 43 1 1.7081 -5.5746 -2.7071 44 1 3.3289 -5.9977 -3.3081 45 1 2.0063 -7.1855 -3.4030 46 1 4.0406 -6.1870 0.2091 47 1 4.0762 -5.1567 -1.2378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001089352001.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:58:56 Heat of formation + Delta-G solvation = 10.558999 kcal Electronic energy + Delta-G solvation = -28723.320522 eV Core-core repulsion = 24908.695374 eV Total energy + Delta-G solvation = -3814.625148 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 4.49 seconds Orbital eigenvalues (eV) -43.70723 -40.08446 -38.44857 -35.75728 -34.89066 -34.36115 -32.46952 -31.80423 -30.71296 -28.36495 -27.51372 -26.68651 -25.64977 -24.40734 -23.63789 -22.33600 -21.39714 -20.69725 -20.12743 -18.82078 -18.02869 -17.15489 -16.76841 -16.53402 -16.18959 -15.19781 -14.95129 -14.81478 -14.69864 -14.19952 -13.94681 -13.60845 -13.48142 -13.34046 -13.14648 -12.83277 -12.54187 -12.41401 -12.17513 -12.00951 -11.87593 -11.53754 -11.39201 -11.32591 -11.15820 -10.93441 -10.74583 -10.56692 -10.49213 -10.35522 -10.19430 -9.85001 -9.81266 -9.68608 -9.47805 -9.29210 -8.89877 -8.43479 -6.73008 -6.00805 -3.42678 0.58744 2.15324 2.20978 2.96545 3.11067 3.33830 3.48685 3.56177 3.75001 4.47022 4.54291 4.56545 4.85525 5.13437 5.14058 5.22310 5.26121 5.29143 5.38322 5.47100 5.62127 5.62606 5.68916 5.69999 5.76924 5.95665 6.06269 6.07068 6.12415 6.17091 6.19057 6.31476 6.38620 6.44732 6.52467 6.63458 6.68964 6.71343 6.77537 6.82957 6.91169 6.99949 7.18111 7.26741 7.44738 8.00010 8.09396 8.36435 9.02143 9.72329 10.17788 11.14394 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022935 B = 0.003454 C = 0.003337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.529430 B = 8105.424016 C = 8388.019224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.076 3.924 3 N -0.494 5.494 4 C 0.198 3.802 5 O -0.192 6.192 6 C -0.111 4.111 7 C 0.605 3.395 8 O -0.510 6.510 9 N -0.707 5.707 10 C 0.148 3.852 11 H 0.099 0.901 12 C -0.137 4.137 13 C 0.138 3.862 14 N -0.598 5.598 15 C -0.265 4.265 16 H 0.075 0.925 17 C 0.046 3.954 18 N -0.895 5.895 19 Si 0.870 3.130 20 H -0.285 1.285 21 H -0.302 1.302 22 H -0.269 1.269 23 C 0.157 3.843 24 C -0.083 4.083 25 C -0.128 4.128 26 C -0.139 4.139 27 C -0.104 4.104 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.256 0.744 32 H 0.401 0.599 33 H 0.047 0.953 34 H 0.066 0.934 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.263 0.737 38 H 0.045 0.955 39 H 0.029 0.971 40 H 0.045 0.955 41 H 0.032 0.968 42 H 0.078 0.922 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.077 0.923 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.259 20.510 -3.890 21.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.048 4.048 3 N -0.224 5.224 4 C -0.027 4.027 5 O -0.077 6.077 6 C -0.166 4.166 7 C 0.390 3.610 8 O -0.387 6.387 9 N -0.357 5.357 10 C 0.045 3.955 11 H 0.117 0.883 12 C -0.177 4.177 13 C 0.014 3.986 14 N -0.320 5.320 15 C -0.394 4.394 16 H 0.092 0.908 17 C -0.156 4.156 18 N -0.536 5.536 19 Si 0.700 3.300 20 H -0.213 1.213 21 H -0.230 1.230 22 H -0.194 1.194 23 C 0.029 3.971 24 C -0.087 4.087 25 C -0.185 4.185 26 C -0.196 4.196 27 C -0.142 4.142 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.271 0.729 32 H 0.235 0.765 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.097 0.903 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.095 0.905 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.291 20.655 -3.858 21.137 hybrid contribution 0.201 -0.557 -0.630 0.865 sum 2.492 20.098 -4.488 20.743 Atomic orbital electron populations 1.20407 0.85256 1.04417 1.03823 1.22079 0.98454 0.86326 0.97937 1.70350 1.01363 1.31530 1.19125 1.28314 0.97624 0.79483 0.97325 1.84494 1.29765 1.24415 1.69073 1.23122 0.81287 0.96584 1.15605 1.16323 0.86052 0.81202 0.77470 1.90878 1.15651 1.81673 1.50543 1.46188 1.09380 1.06683 1.73410 1.20526 0.99792 0.77200 0.97976 0.88329 1.21339 1.02387 0.98867 0.95137 1.20382 0.94372 0.87733 0.96103 1.44191 1.74884 1.13404 0.99537 1.18643 1.23818 0.81744 1.15163 0.90791 1.25473 0.96984 0.95270 0.97836 1.69881 1.36360 1.00942 1.46410 0.87023 0.86757 0.76519 0.79735 1.21321 1.23014 1.19382 1.20784 0.92776 0.98306 0.85263 1.21840 0.98757 0.94476 0.93638 1.21724 0.96635 0.96910 1.03212 1.21877 1.00549 1.00372 0.96851 1.21805 0.96758 0.95770 0.99861 0.89941 0.90559 0.88481 0.72866 0.76488 0.93424 0.91545 0.94742 0.91206 0.92764 0.93741 0.95303 0.93561 0.94867 0.90295 0.93337 0.93335 0.92979 0.90452 0.93112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.87 36.01 0.36 -0.51 16 2 C 0.08 0.91 7.16 -82.47 -0.59 0.32 16 3 N -0.49 -5.41 11.26 -10.89 -0.12 -5.53 16 4 C 0.20 1.54 13.21 52.25 0.69 2.23 16 5 O -0.19 -1.90 10.57 4.42 0.05 -1.85 16 6 C -0.11 -1.36 7.18 -36.84 -0.26 -1.62 16 7 C 0.61 8.46 7.79 -12.83 -0.10 8.37 16 8 O -0.51 -8.45 14.44 5.21 0.08 -8.38 16 9 N -0.71 -9.13 4.95 -56.68 -0.28 -9.41 16 10 C 0.15 2.26 2.16 -69.54 -0.15 2.11 16 11 H 0.10 1.72 5.15 -51.92 -0.27 1.45 16 12 C -0.14 -2.27 4.92 -30.12 -0.15 -2.42 16 13 C 0.14 2.68 6.11 -5.21 -0.03 2.65 16 14 N -0.60 -13.43 2.13 -175.08 -0.37 -13.80 16 15 C -0.27 -6.98 9.24 -15.06 -0.14 -7.12 16 16 H 0.07 2.12 8.06 -52.48 -0.42 1.69 16 17 C 0.05 1.26 5.28 -17.43 -0.09 1.17 16 18 N -0.90 -26.24 13.97 55.49 0.78 -25.47 16 19 Si 0.87 21.95 25.26 -169.99 -4.29 17.66 16 20 H -0.29 -7.04 6.74 56.52 0.38 -6.66 16 21 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.16 3.29 3.04 -4.65 -0.01 3.28 16 24 C -0.08 -1.47 0.77 -152.53 -0.12 -1.59 16 25 C -0.13 -2.40 8.29 37.15 0.31 -2.09 16 26 C -0.14 -2.11 8.20 37.16 0.30 -1.81 16 27 C -0.10 -1.60 4.14 -27.19 -0.11 -1.72 16 28 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.10 1.13 6.47 -51.93 -0.34 0.79 16 31 H 0.26 0.53 8.06 -52.49 -0.42 0.11 16 32 H 0.40 4.28 8.32 -40.82 -0.34 3.94 16 33 H 0.05 0.75 8.02 -51.93 -0.42 0.33 16 34 H 0.07 1.13 6.94 -51.93 -0.36 0.77 16 35 H 0.03 0.67 8.12 -51.93 -0.42 0.25 16 36 H 0.07 1.35 7.99 -51.93 -0.42 0.94 16 37 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 38 H 0.04 1.05 3.25 -51.93 -0.17 0.88 16 39 H 0.03 0.59 6.68 -51.93 -0.35 0.24 16 40 H 0.05 0.91 8.13 -51.93 -0.42 0.49 16 41 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 1.73 7.45 -51.92 -0.39 1.35 16 43 H 0.05 0.72 7.55 -51.93 -0.39 0.32 16 44 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 1.30 6.66 -51.93 -0.35 0.95 16 47 H 0.05 0.68 7.67 -51.93 -0.40 0.28 16 LS Contribution 364.42 15.07 5.49 5.49 Total: -1.00 -31.35 364.42 -5.91 -37.27 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -7.13 Total: 2.79 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: -0.10 Total: 1.24 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.00 Total: -54.21 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.12 Total: -10.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.29 Total: 17.66 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.35 -5.91 -37.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001089352001.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.825 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.49 seconds