Wall clock time and date at job start Tue Mar 31 2020 14:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30133 * 126.70559 * 2 1 4 4 O 1.20890 * 111.98046 * 179.97438 * 3 2 1 5 5 C 1.34638 * 111.46840 * 359.97438 * 4 3 2 6 6 C 1.47510 * 126.94095 * 179.97438 * 5 4 3 7 7 O 1.21584 * 119.99818 * 180.02562 * 6 5 4 8 8 N 1.34772 * 120.00308 * 0.02562 * 6 5 4 9 9 C 1.46501 * 120.00156 * 180.02562 * 8 6 5 10 10 C 1.53003 * 109.46803 * 176.62311 * 9 8 6 11 11 N 1.46499 * 109.47377 * 54.63316 * 10 9 8 12 12 C 1.36934 * 119.99958 * 62.83744 * 11 10 9 13 13 H 1.07998 * 120.00484 * 354.24668 * 12 11 10 14 14 C 1.38817 * 119.99854 * 173.97503 * 12 11 10 15 15 N 1.31612 * 119.99946 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99857 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47420 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.47076 * 119.99702 * 16 14 12 19 19 H 1.48497 * 109.47246 * 239.99546 * 16 14 12 20 20 C 1.53005 * 109.46945 * 174.63064 * 10 9 8 21 21 C 1.53001 * 109.47149 * 180.02562 * 20 10 9 22 22 C 1.52997 * 109.46954 * 299.99640 * 21 20 10 23 23 C 1.53005 * 109.46899 * 60.00206 * 22 21 20 24 24 C 1.52997 * 109.47323 * 294.62805 * 10 9 8 25 25 C 1.36820 * 106.11284 * 0.22364 * 5 4 3 26 26 C 1.50710 * 128.07624 * 179.77158 * 25 5 4 27 27 H 1.09001 * 109.47396 * 90.02580 * 1 2 3 28 28 H 1.09003 * 109.47230 * 210.02927 * 1 2 3 29 29 H 1.09003 * 109.47158 * 330.02862 * 1 2 3 30 30 H 0.96999 * 119.99947 * 0.02562 * 8 6 5 31 31 H 1.09001 * 109.47147 * 56.62569 * 9 8 6 32 32 H 1.08991 * 109.47479 * 296.62556 * 9 8 6 33 33 H 0.96995 * 119.99919 * 242.83938 * 11 10 9 34 34 H 0.97010 * 120.00028 * 179.97438 * 15 14 12 35 35 H 1.09006 * 109.47053 * 299.99717 * 20 10 9 36 36 H 1.08997 * 109.47078 * 59.99850 * 20 10 9 37 37 H 1.08996 * 109.47050 * 179.97438 * 21 20 10 38 38 H 1.08997 * 109.47521 * 59.99794 * 21 20 10 39 39 H 1.09000 * 109.47612 * 300.00494 * 22 21 20 40 40 H 1.09001 * 109.47153 * 179.97438 * 22 21 20 41 41 H 1.09008 * 109.46787 * 179.97438 * 23 22 21 42 42 H 1.08997 * 109.47078 * 60.00152 * 23 22 21 43 43 H 1.08998 * 109.47200 * 299.99870 * 24 10 9 44 44 H 1.09000 * 109.46986 * 60.00783 * 24 10 9 45 45 H 1.09003 * 109.46676 * 89.99821 * 26 25 5 46 46 H 1.09000 * 109.47153 * 210.00448 * 26 25 5 47 47 H 1.08996 * 109.46813 * 330.00292 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2847 1.0433 0.0000 4 8 3.4539 0.7360 0.0005 5 6 3.6120 -0.6010 0.0015 6 6 4.8870 -1.3430 0.0018 7 8 4.8827 -2.5588 0.0022 8 7 6.0565 -0.6732 0.0016 9 6 7.3227 -1.4101 0.0013 10 6 8.4877 -0.4220 -0.0839 11 7 8.3755 0.5597 0.9977 12 6 8.4465 0.1516 2.3029 13 1 8.4917 -0.9016 2.5377 14 6 8.4662 1.0918 3.3240 15 7 8.4170 2.3754 3.0376 16 14 8.5623 0.5350 5.1045 17 1 8.6072 -0.9483 5.1576 18 1 9.7893 1.0895 5.7310 19 1 7.3677 1.0214 5.8404 20 6 9.8100 -1.1799 0.0505 21 6 10.9751 -0.1918 -0.0341 22 6 10.9354 0.5292 -1.3829 23 6 9.6131 1.2871 -1.5172 24 6 8.4478 0.2985 -1.4329 25 6 2.3513 -1.1325 -0.0036 26 6 1.9556 -2.5867 -0.0096 27 1 -0.3634 -0.0005 -1.0277 28 1 -0.3634 -0.8897 0.5143 29 1 -0.3633 0.8903 0.5134 30 1 6.0599 0.2967 0.0016 31 1 7.3521 -2.0815 -0.8569 32 1 7.4052 -1.9910 0.9199 33 1 8.2510 1.4988 0.7893 34 1 8.4304 3.0325 3.7512 35 1 9.8386 -1.6933 1.0117 36 1 9.8935 -1.9104 -0.7542 37 1 11.9171 -0.7317 0.0621 38 1 10.8915 0.5384 0.7708 39 1 11.0190 -0.2009 -2.1879 40 1 11.7651 1.2335 -1.4430 41 1 9.5850 1.8012 -2.4781 42 1 9.5294 2.0173 -0.7123 43 1 8.5313 -0.4319 -2.2376 44 1 7.5058 0.8386 -1.5286 45 1 1.8577 -2.9408 1.0167 46 1 1.0028 -2.7019 -0.5264 47 1 2.7204 -3.1691 -0.5234 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115587721.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:16:16 Heat of formation + Delta-G solvation = 14.456070 kcal Electronic energy + Delta-G solvation = -28400.078281 eV Core-core repulsion = 24585.622122 eV Total energy + Delta-G solvation = -3814.456158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.90945 -39.61833 -38.44533 -35.52421 -34.48932 -33.33053 -32.60333 -31.19633 -30.24211 -29.05568 -28.60855 -28.12700 -25.65974 -23.79683 -22.99589 -22.04011 -21.73559 -20.44370 -19.85557 -18.44026 -17.87923 -17.71492 -17.11401 -15.90100 -15.65024 -15.13226 -14.76223 -14.47962 -14.00074 -13.92594 -13.71100 -13.66473 -13.57306 -13.31793 -13.08512 -13.00970 -12.80943 -12.74531 -12.46327 -12.16564 -11.89837 -11.71897 -11.57745 -11.16251 -11.09780 -10.89539 -10.78155 -10.54519 -10.14943 -10.07850 -10.01608 -9.92071 -9.76938 -9.61674 -9.41161 -9.32595 -8.90058 -8.59932 -7.02461 -5.81005 -3.10466 0.93610 2.04152 2.81749 3.25228 3.40876 3.48315 3.49294 3.55926 4.03523 4.47478 4.56044 4.84216 4.94413 5.16855 5.24498 5.26658 5.28218 5.29314 5.49206 5.52519 5.56082 5.57679 5.58707 5.70024 5.75202 5.80803 5.86316 5.96598 6.02764 6.09788 6.13430 6.16864 6.19736 6.28394 6.43372 6.45517 6.56952 6.69245 6.78351 6.82102 6.90662 7.00398 7.20324 7.70549 7.74067 8.16875 8.35688 8.37119 9.49514 10.01926 10.38238 11.40790 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.011372 B = 0.004346 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.612435 B = 6440.697853 C = 7602.695562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.004 3.996 3 N -0.346 5.346 4 O 0.122 5.878 5 C -0.078 4.078 6 C 0.598 3.402 7 O -0.528 6.528 8 N -0.680 5.680 9 C 0.113 3.887 10 C 0.190 3.810 11 N -0.710 5.710 12 C -0.233 4.233 13 H 0.070 0.930 14 C -0.006 4.006 15 N -0.928 5.928 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.292 1.292 19 H -0.294 1.294 20 C -0.114 4.114 21 C -0.110 4.110 22 C -0.112 4.112 23 C -0.115 4.115 24 C -0.115 4.115 25 C -0.130 4.130 26 C -0.081 4.081 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.410 0.590 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.385 0.615 34 H 0.254 0.746 35 H 0.064 0.936 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.069 0.931 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.119 -6.017 -10.478 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.154 4.154 3 N -0.047 5.047 4 O 0.049 5.951 5 C -0.144 4.144 6 C 0.380 3.620 7 O -0.406 6.406 8 N -0.329 5.329 9 C -0.013 4.013 10 C 0.098 3.902 11 N -0.352 5.352 12 C -0.364 4.364 13 H 0.088 0.912 14 C -0.203 4.203 15 N -0.576 5.576 16 Si 0.730 3.270 17 H -0.206 1.206 18 H -0.220 1.220 19 H -0.221 1.221 20 C -0.153 4.153 21 C -0.147 4.147 22 C -0.150 4.150 23 C -0.153 4.153 24 C -0.153 4.153 25 C -0.135 4.135 26 C -0.138 4.138 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.247 0.753 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.221 0.779 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.063 0.937 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.094 0.906 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -8.284 -5.626 -10.306 14.370 hybrid contribution -0.025 -0.123 1.185 1.192 sum -8.308 -5.749 -9.121 13.612 Atomic orbital electron populations 1.20153 0.85580 1.03909 1.03349 1.23477 0.99093 0.88279 1.04504 1.73737 0.89431 1.24286 1.17253 1.85000 1.21089 1.22068 1.66928 1.24179 0.97296 0.83765 1.09114 1.16495 0.81171 0.86143 0.78165 1.90791 1.86075 1.11843 1.51904 1.45729 1.04932 1.11488 1.70780 1.22041 0.82918 0.95059 1.01299 1.19823 0.91554 0.89966 0.88843 1.42475 1.86561 1.05438 1.00713 1.19103 1.42480 0.92130 0.82685 0.91220 1.24673 1.02793 0.95219 0.97569 1.69651 1.57397 0.99301 1.31244 0.86255 0.77131 0.77695 0.85933 1.20618 1.21965 1.22077 1.21782 0.95412 0.97327 1.00828 1.21371 0.96493 0.99033 0.97814 1.21471 0.97078 0.98663 0.97774 1.21480 0.94402 0.98283 1.01136 1.21713 0.98392 0.98439 0.96752 1.21410 0.90342 0.98408 1.03341 1.20274 1.02224 0.88096 1.03234 0.90152 0.89932 0.90363 0.75270 0.92267 0.91190 0.77941 0.93609 0.91697 0.93684 0.93771 0.89772 0.93248 0.93041 0.93266 0.90649 0.92195 0.92378 0.90420 0.91175 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.39 36.00 0.37 -0.27 16 2 C 0.00 0.06 7.31 -82.17 -0.60 -0.54 16 3 N -0.35 -5.52 12.04 33.52 0.40 -5.12 16 4 O 0.12 2.02 11.04 15.56 0.17 2.20 16 5 C -0.08 -1.25 7.29 -36.32 -0.26 -1.52 16 6 C 0.60 10.35 7.82 -12.48 -0.10 10.25 16 7 O -0.53 -9.91 15.12 5.29 0.08 -9.83 16 8 N -0.68 -11.63 5.09 -61.36 -0.31 -11.94 16 9 C 0.11 1.93 4.37 -4.04 -0.02 1.91 16 10 C 0.19 3.26 0.41 -131.82 -0.05 3.21 16 11 N -0.71 -15.08 3.40 -47.23 -0.16 -15.24 16 12 C -0.23 -5.76 8.70 -15.06 -0.13 -5.89 16 13 H 0.07 1.74 6.77 -52.49 -0.36 1.39 16 14 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 15 N -0.93 -26.18 13.07 55.49 0.73 -25.46 16 16 Si 0.90 21.81 29.55 -169.99 -5.02 16.79 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 18 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 19 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 20 C -0.11 -1.88 4.52 -26.73 -0.12 -2.00 16 21 C -0.11 -1.80 5.77 -26.73 -0.15 -1.96 16 22 C -0.11 -1.62 5.92 -26.73 -0.16 -1.77 16 23 C -0.12 -1.72 5.75 -26.70 -0.15 -1.87 16 24 C -0.11 -1.71 4.65 -26.71 -0.12 -1.83 16 25 C -0.13 -1.83 6.36 -103.98 -0.66 -2.49 16 26 C -0.08 -0.92 9.86 36.01 0.36 -0.56 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.41 7.08 7.22 -40.82 -0.29 6.79 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.35 7.50 -51.93 -0.39 0.96 16 33 H 0.39 8.90 6.63 -40.82 -0.27 8.63 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 35 H 0.06 1.18 7.23 -51.93 -0.38 0.81 16 36 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.08 1.69 7.60 -51.93 -0.39 1.30 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.65 8.14 -51.92 -0.42 0.22 16 42 H 0.07 1.31 6.92 -51.93 -0.36 0.95 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.85 7.28 -51.93 -0.38 0.48 16 45 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.13 6.73 -51.93 -0.35 0.78 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -28.73 375.15 -7.74 -36.48 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -7.38 Total: 12.07 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.91 Total: -5.60 kcal Atomic # 7 Polarization: -58.41 SS G_CDS: 0.66 Total: -57.75 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.25 Total: -7.64 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.73 -7.74 -36.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115587721.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.931 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds