Wall clock time and date at job start Tue Mar 31 2020 13:14:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30012 * 127.33843 * 2 1 4 4 O 1.20662 * 112.30392 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15178 * 359.71425 * 4 3 2 6 6 C 1.50700 * 126.82623 * 180.30656 * 5 4 3 7 7 C 1.37354 * 106.34369 * 0.45759 * 5 4 3 8 8 C 1.47404 * 128.56528 * 179.85610 * 7 5 4 9 9 O 1.21602 * 119.99923 * 269.67293 * 8 7 5 10 10 N 1.34776 * 119.99996 * 89.66691 * 8 7 5 11 11 C 1.46962 * 120.65459 * 5.16786 * 10 8 7 12 12 C 1.53191 * 108.89013 * 233.52726 * 11 10 8 13 13 C 1.53041 * 109.31207 * 305.44398 * 12 11 10 14 14 C 1.53036 * 109.53889 * 61.35921 * 13 12 11 15 15 C 1.46923 * 120.63049 * 185.33872 * 10 8 7 16 16 H 1.09001 * 109.58984 * 246.32954 * 15 10 8 17 17 C 1.52998 * 109.58707 * 6.61554 * 15 10 8 18 18 N 1.46504 * 109.47054 * 178.53916 * 17 15 10 19 19 C 1.46500 * 119.99784 * 94.48152 * 18 17 15 20 20 C 1.36936 * 119.99859 * 274.47890 * 18 17 15 21 21 H 1.07996 * 120.00145 * 323.07682 * 20 18 17 22 22 C 1.38816 * 119.99453 * 143.07955 * 20 18 17 23 23 N 1.31619 * 119.99503 * 172.65554 * 22 20 18 24 24 Si 1.86798 * 120.00362 * 352.65588 * 22 20 18 25 25 H 1.48502 * 109.46990 * 87.19018 * 24 22 20 26 26 H 1.48495 * 109.47271 * 207.18892 * 24 22 20 27 27 H 1.48499 * 109.47070 * 327.19175 * 24 22 20 28 28 H 1.08998 * 109.47539 * 269.95299 * 1 2 3 29 29 H 1.09003 * 109.47607 * 29.95536 * 1 2 3 30 30 H 1.09005 * 109.47557 * 149.95443 * 1 2 3 31 31 H 1.08999 * 109.47594 * 270.17216 * 6 5 4 32 32 H 1.09003 * 109.46941 * 30.17828 * 6 5 4 33 33 H 1.09005 * 109.46940 * 150.16864 * 6 5 4 34 34 H 1.09001 * 109.46734 * 113.74292 * 11 10 8 35 35 H 1.08995 * 109.59330 * 353.38878 * 11 10 8 36 36 H 1.08995 * 109.49651 * 185.49154 * 12 11 10 37 37 H 1.09001 * 109.49614 * 65.39148 * 12 11 10 38 38 H 1.09007 * 109.46138 * 301.34547 * 13 12 11 39 39 H 1.08993 * 109.46160 * 181.38969 * 13 12 11 40 40 H 1.09004 * 109.49909 * 178.68153 * 14 13 12 41 41 H 1.09007 * 109.52391 * 58.60680 * 14 13 12 42 42 H 1.08999 * 109.46765 * 298.53768 * 17 15 10 43 43 H 1.08997 * 109.47349 * 58.54246 * 17 15 10 44 44 H 1.09003 * 109.47215 * 55.69312 * 19 18 17 45 45 H 1.09000 * 109.47113 * 175.69182 * 19 18 17 46 46 H 1.09001 * 109.47096 * 295.69435 * 19 18 17 47 47 H 0.96995 * 119.99785 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6493 -0.6009 0.0052 6 6 4.9710 -1.3248 0.0128 7 6 2.3990 -1.1697 -0.0007 8 6 2.0399 -2.5993 -0.0009 9 8 1.8914 -3.1887 -1.0542 10 7 1.8762 -3.2532 1.1661 11 6 1.9407 -2.5316 2.4448 12 6 2.9663 -3.2194 3.3512 13 6 2.6111 -4.7021 3.4834 14 6 2.6625 -5.3656 2.1053 15 6 1.6334 -4.7021 1.1847 16 1 0.6285 -4.8995 1.5579 17 6 1.7744 -5.2640 -0.2313 18 7 1.5663 -6.7139 -0.2043 19 6 0.2389 -7.2686 -0.4811 20 6 2.6125 -7.5506 0.0795 21 1 3.6033 -7.3181 -0.2818 22 6 2.3993 -8.6977 0.8318 23 7 3.3689 -9.5747 0.9833 24 14 0.7366 -8.9965 1.6288 25 1 -0.1565 -9.6896 0.6659 26 1 0.9117 -9.8410 2.8376 27 1 0.1327 -7.6964 2.0165 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 5.2950 -1.5005 -1.0130 32 1 5.7145 -0.7181 0.5298 33 1 4.8595 -2.2793 0.5272 34 1 0.9609 -2.5499 2.9221 35 1 2.2437 -1.4998 2.2673 36 1 2.9522 -2.7527 4.3361 37 1 3.9607 -3.1210 2.9156 38 1 1.6069 -4.7996 3.8961 39 1 3.3252 -5.1888 4.1477 40 1 2.4323 -6.4265 2.2035 41 1 3.6597 -5.2475 1.6811 42 1 1.0309 -4.8022 -0.8810 43 1 2.7731 -5.0473 -0.6105 44 1 -0.1082 -6.9136 -1.4515 45 1 0.2949 -8.3571 -0.4913 46 1 -0.4577 -6.9479 0.2935 47 1 3.2202 -10.3760 1.5092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157504342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:48 Heat of formation + Delta-G solvation = 63.616452 kcal Electronic energy + Delta-G solvation = -29339.464146 eV Core-core repulsion = 25527.139742 eV Total energy + Delta-G solvation = -3812.324404 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.97102 -40.25118 -37.22394 -35.82193 -34.68115 -33.72460 -32.54237 -31.86587 -30.78623 -28.94829 -28.20474 -26.94757 -25.91457 -24.94818 -23.86728 -22.48223 -20.93417 -20.43080 -20.22395 -18.96222 -17.89725 -17.39240 -16.82581 -16.23158 -15.82116 -15.30262 -14.87411 -14.43978 -14.29974 -14.11195 -13.88371 -13.67618 -13.46098 -13.34091 -13.29935 -13.10470 -12.99014 -12.85939 -12.74401 -12.53112 -12.22402 -12.17123 -11.84105 -11.42208 -11.17197 -11.12865 -10.70816 -10.47570 -10.34988 -10.25873 -10.04700 -10.01972 -9.87397 -9.59160 -9.47013 -9.12226 -8.50809 -8.30985 -6.77490 -5.93168 -3.40627 1.21391 1.79763 2.51646 2.72589 3.19884 3.29980 3.42827 3.46483 3.94900 4.13240 4.49933 4.57164 4.81100 4.84288 4.98783 5.06643 5.13568 5.21773 5.24321 5.28344 5.31093 5.34831 5.39817 5.44494 5.51853 5.56227 5.60015 5.74171 5.82956 5.86783 5.94434 6.00332 6.14360 6.20370 6.33382 6.40964 6.47390 6.58719 6.70191 6.75925 6.86583 7.14840 7.24851 7.55460 8.09674 8.09930 8.26141 8.44161 9.00744 9.73440 10.14969 11.22553 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.004196 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.975916 B = 6671.517103 C = 6893.607024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.051 3.949 3 N -0.359 5.359 4 O 0.093 5.907 5 C 0.014 3.986 6 C -0.079 4.079 7 C -0.241 4.241 8 C 0.593 3.407 9 O -0.512 6.512 10 N -0.592 5.592 11 C 0.110 3.890 12 C -0.132 4.132 13 C -0.124 4.124 14 C -0.119 4.119 15 C 0.125 3.875 16 H 0.062 0.938 17 C 0.162 3.838 18 N -0.614 5.614 19 C 0.097 3.903 20 C -0.255 4.255 21 H 0.081 0.919 22 C 0.026 3.974 23 N -0.915 5.915 24 Si 0.893 3.107 25 H -0.289 1.289 26 H -0.307 1.307 27 H -0.268 1.268 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.103 0.897 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.055 0.945 44 H 0.022 0.978 45 H 0.062 0.938 46 H 0.013 0.987 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.815 18.747 4.097 19.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.111 4.111 3 N -0.066 5.066 4 O 0.031 5.969 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.248 4.248 8 C 0.379 3.621 9 O -0.388 6.388 10 N -0.326 5.326 11 C -0.014 4.014 12 C -0.170 4.170 13 C -0.162 4.162 14 C -0.156 4.156 15 C 0.021 3.979 16 H 0.080 0.920 17 C 0.036 3.964 18 N -0.339 5.339 19 C -0.047 4.047 20 C -0.384 4.384 21 H 0.099 0.901 22 C -0.173 4.173 23 N -0.558 5.558 24 Si 0.724 3.276 25 H -0.216 1.216 26 H -0.235 1.235 27 H -0.193 1.193 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.114 0.886 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.121 0.879 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.074 0.926 44 H 0.040 0.960 45 H 0.080 0.920 46 H 0.031 0.969 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.036 19.559 3.584 19.989 hybrid contribution -1.019 -1.043 0.724 1.627 sum -3.055 18.516 4.308 19.255 Atomic orbital electron populations 1.20211 0.85311 1.04297 1.03642 1.24739 0.98509 0.86669 1.01207 1.73589 0.89212 1.23440 1.20400 1.84511 1.21426 1.22735 1.68212 1.24616 0.97523 0.83511 0.99248 1.20480 0.88839 0.99320 1.04973 1.22106 0.92716 0.95777 1.14227 1.16982 0.77497 0.83517 0.84137 1.90889 1.50067 1.66198 1.31607 1.48383 1.69747 1.09513 1.04930 1.21685 0.99711 0.95559 0.84429 1.21906 0.99066 0.97009 0.98995 1.21618 1.01257 0.94372 0.98931 1.21953 0.99159 1.02050 0.92484 1.22443 0.98209 0.75519 1.01743 0.92007 1.21554 1.01571 0.82375 0.90929 1.44385 1.06433 1.01532 1.81511 1.21490 0.87550 0.98664 0.97042 1.18878 0.89952 1.02647 1.26907 0.90132 1.25489 0.96707 0.97705 0.97385 1.69746 1.32064 1.11114 1.42838 0.86894 0.84772 0.77694 0.78195 1.21650 1.23541 1.19335 0.89806 0.90050 0.89640 0.88558 0.89247 0.88600 0.91492 0.90758 0.91345 0.91577 0.92505 0.91845 0.87868 0.91831 0.90919 0.92629 0.95960 0.91991 0.96875 0.92806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.49 36.00 0.38 -0.37 16 2 C 0.05 0.64 7.58 -79.77 -0.60 0.03 16 3 N -0.36 -4.68 12.01 34.78 0.42 -4.26 16 4 O 0.09 1.12 11.06 18.64 0.21 1.33 16 5 C 0.01 0.16 7.55 -34.63 -0.26 -0.10 16 6 C -0.08 -0.69 10.33 36.01 0.37 -0.31 16 7 C -0.24 -3.23 4.19 -102.89 -0.43 -3.66 16 8 C 0.59 9.35 7.32 -12.53 -0.09 9.26 16 9 O -0.51 -9.85 12.65 5.28 0.07 -9.78 16 10 N -0.59 -8.83 2.98 -166.46 -0.50 -9.33 16 11 C 0.11 1.28 6.35 -3.69 -0.02 1.25 16 12 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 13 C -0.12 -1.76 5.88 -26.69 -0.16 -1.92 16 14 C -0.12 -2.17 4.45 -26.61 -0.12 -2.29 16 15 C 0.12 2.25 3.21 -67.60 -0.22 2.03 16 16 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 17 C 0.16 3.41 3.75 -4.04 -0.02 3.40 16 18 N -0.61 -14.67 2.48 -181.12 -0.45 -15.12 16 19 C 0.10 2.17 8.38 59.85 0.50 2.67 16 20 C -0.25 -6.90 7.87 -15.06 -0.12 -7.02 16 21 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 22 C 0.03 0.73 4.97 -17.43 -0.09 0.64 16 23 N -0.91 -27.34 13.97 55.49 0.78 -26.57 16 24 Si 0.89 21.98 23.61 -169.99 -4.01 17.97 16 25 H -0.29 -7.01 6.59 56.52 0.37 -6.64 16 26 H -0.31 -7.71 7.11 56.52 0.40 -7.31 16 27 H -0.27 -6.31 6.29 56.52 0.36 -5.96 16 28 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.10 0.91 8.11 -51.93 -0.42 0.49 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.07 0.79 6.32 -51.93 -0.33 0.47 16 36 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.10 2.29 5.48 -51.93 -0.28 2.01 16 41 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 42 H 0.07 1.56 6.10 -51.93 -0.32 1.25 16 43 H 0.06 1.26 7.19 -51.93 -0.37 0.89 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.47 4.48 -51.93 -0.23 1.23 16 46 H 0.01 0.28 6.77 -51.93 -0.35 -0.07 16 47 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 363.81 15.07 5.48 5.48 Total: -1.00 -31.67 363.81 -6.48 -38.15 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.44 Total: 0.15 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -1.03 Total: 1.97 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.25 Total: -55.27 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.27 Total: -8.45 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.01 Total: 17.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.67 -6.48 -38.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157504342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.769 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds