Wall clock time and date at job start Tue Mar 31 2020 13:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30012 * 127.33843 * 2 1 4 4 O 1.20662 * 112.30392 * 180.02562 * 3 2 1 5 5 C 1.33496 * 113.15178 * 359.71425 * 4 3 2 6 6 C 1.50700 * 126.82623 * 180.30656 * 5 4 3 7 7 C 1.37354 * 106.34369 * 0.45759 * 5 4 3 8 8 C 1.47404 * 128.56528 * 179.85610 * 7 5 4 9 9 O 1.21602 * 119.99923 * 269.67293 * 8 7 5 10 10 N 1.34776 * 119.99996 * 89.66691 * 8 7 5 11 11 C 1.46962 * 120.65459 * 5.16786 * 10 8 7 12 12 C 1.53191 * 108.89013 * 233.52726 * 11 10 8 13 13 C 1.53041 * 109.31207 * 305.44398 * 12 11 10 14 14 C 1.53036 * 109.53889 * 61.35921 * 13 12 11 15 15 C 1.46923 * 120.63049 * 185.33872 * 10 8 7 16 16 H 1.09001 * 109.58984 * 246.32954 * 15 10 8 17 17 C 1.52998 * 109.58707 * 6.61554 * 15 10 8 18 18 N 1.46504 * 109.47054 * 178.53916 * 17 15 10 19 19 C 1.46500 * 119.99784 * 94.48152 * 18 17 15 20 20 C 1.36936 * 119.99859 * 274.47890 * 18 17 15 21 21 H 1.07996 * 120.00145 * 323.07682 * 20 18 17 22 22 C 1.38816 * 119.99453 * 143.07955 * 20 18 17 23 23 N 1.31619 * 119.99503 * 172.65554 * 22 20 18 24 24 Si 1.86798 * 120.00362 * 352.65588 * 22 20 18 25 25 H 1.48502 * 109.46990 * 87.19018 * 24 22 20 26 26 H 1.48495 * 109.47271 * 207.18892 * 24 22 20 27 27 H 1.48499 * 109.47070 * 327.19175 * 24 22 20 28 28 H 1.08998 * 109.47539 * 269.95299 * 1 2 3 29 29 H 1.09003 * 109.47607 * 29.95536 * 1 2 3 30 30 H 1.09005 * 109.47557 * 149.95443 * 1 2 3 31 31 H 1.08999 * 109.47594 * 270.17216 * 6 5 4 32 32 H 1.09003 * 109.46941 * 30.17828 * 6 5 4 33 33 H 1.09005 * 109.46940 * 150.16864 * 6 5 4 34 34 H 1.09001 * 109.46734 * 113.74292 * 11 10 8 35 35 H 1.08995 * 109.59330 * 353.38878 * 11 10 8 36 36 H 1.08995 * 109.49651 * 185.49154 * 12 11 10 37 37 H 1.09001 * 109.49614 * 65.39148 * 12 11 10 38 38 H 1.09007 * 109.46138 * 301.34547 * 13 12 11 39 39 H 1.08993 * 109.46160 * 181.38969 * 13 12 11 40 40 H 1.09004 * 109.49909 * 178.68153 * 14 13 12 41 41 H 1.09007 * 109.52391 * 58.60680 * 14 13 12 42 42 H 1.08999 * 109.46765 * 298.53768 * 17 15 10 43 43 H 1.08997 * 109.47349 * 58.54246 * 17 15 10 44 44 H 1.09003 * 109.47215 * 55.69312 * 19 18 17 45 45 H 1.09000 * 109.47113 * 175.69182 * 19 18 17 46 46 H 1.09001 * 109.47096 * 295.69435 * 19 18 17 47 47 H 0.96995 * 119.99785 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0005 5 6 3.6493 -0.6009 0.0052 6 6 4.9710 -1.3248 0.0128 7 6 2.3990 -1.1697 -0.0007 8 6 2.0399 -2.5993 -0.0009 9 8 1.8914 -3.1887 -1.0542 10 7 1.8762 -3.2532 1.1661 11 6 1.9407 -2.5316 2.4448 12 6 2.9663 -3.2194 3.3512 13 6 2.6111 -4.7021 3.4834 14 6 2.6625 -5.3656 2.1053 15 6 1.6334 -4.7021 1.1847 16 1 0.6285 -4.8995 1.5579 17 6 1.7744 -5.2640 -0.2313 18 7 1.5663 -6.7139 -0.2043 19 6 0.2389 -7.2686 -0.4811 20 6 2.6125 -7.5506 0.0795 21 1 3.6033 -7.3181 -0.2818 22 6 2.3993 -8.6977 0.8318 23 7 3.3689 -9.5747 0.9833 24 14 0.7366 -8.9965 1.6288 25 1 -0.1565 -9.6896 0.6659 26 1 0.9117 -9.8410 2.8376 27 1 0.1327 -7.6964 2.0165 28 1 -0.3634 -0.0008 1.0276 29 1 -0.3634 0.8904 -0.5131 30 1 -0.3634 -0.8896 -0.5145 31 1 5.2950 -1.5005 -1.0130 32 1 5.7145 -0.7181 0.5298 33 1 4.8595 -2.2793 0.5272 34 1 0.9609 -2.5499 2.9221 35 1 2.2437 -1.4998 2.2673 36 1 2.9522 -2.7527 4.3361 37 1 3.9607 -3.1210 2.9156 38 1 1.6069 -4.7996 3.8961 39 1 3.3252 -5.1888 4.1477 40 1 2.4323 -6.4265 2.2035 41 1 3.6597 -5.2475 1.6811 42 1 1.0309 -4.8022 -0.8810 43 1 2.7731 -5.0473 -0.6105 44 1 -0.1082 -6.9136 -1.4515 45 1 0.2949 -8.3571 -0.4913 46 1 -0.4577 -6.9479 0.2935 47 1 3.2202 -10.3760 1.5092 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157504342.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:14:47 Heat of formation + Delta-G solvation = 43.779458 kcal Electronic energy + Delta-G solvation = -29340.324343 eV Core-core repulsion = 25527.139742 eV Total energy + Delta-G solvation = -3813.184601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.92413 -41.55403 -38.58276 -37.51771 -35.68482 -34.67527 -33.89868 -33.64360 -32.32712 -29.77731 -29.12547 -28.38280 -27.83755 -26.28811 -24.97687 -23.97302 -22.25636 -21.88963 -21.24173 -20.12424 -18.87536 -18.85700 -18.48616 -17.45502 -17.23638 -17.00746 -16.20126 -15.88280 -15.45969 -15.24702 -15.17114 -14.96789 -14.61853 -14.55395 -14.41514 -14.34147 -14.13081 -14.00025 -13.94478 -13.80780 -13.57457 -13.40163 -13.33766 -13.14436 -12.48549 -12.17369 -12.11584 -12.01009 -11.95538 -11.85301 -11.66227 -11.48926 -11.38446 -10.98981 -10.85474 -10.52450 -10.23820 -9.61100 -8.75049 -8.11207 -5.57598 0.27079 0.84057 1.31022 1.33220 1.41095 1.51661 1.68783 2.10346 2.43587 3.03375 3.18785 3.23837 3.40584 3.57725 3.85946 3.90061 3.96957 4.02029 4.14515 4.23212 4.35658 4.40362 4.48033 4.50563 4.53898 4.57210 4.58746 4.63300 4.65145 4.73071 4.76625 4.80615 4.91930 4.97702 5.03471 5.05763 5.08384 5.11302 5.18658 5.30420 5.38205 5.56681 5.71391 5.97631 6.17608 6.35312 6.93411 7.08255 7.16584 7.64523 8.06423 9.08133 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.004196 C = 0.004061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.975916 B = 6671.517103 C = 6893.607024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.054 3.946 3 N -0.373 5.373 4 O 0.093 5.907 5 C 0.032 3.968 6 C -0.081 4.081 7 C -0.267 4.267 8 C 0.597 3.403 9 O -0.556 6.556 10 N -0.588 5.588 11 C 0.108 3.892 12 C -0.124 4.124 13 C -0.119 4.119 14 C -0.113 4.113 15 C 0.137 3.863 16 H 0.065 0.935 17 C 0.172 3.828 18 N -0.627 5.627 19 C 0.095 3.905 20 C -0.237 4.237 21 H 0.037 0.963 22 C -0.022 4.022 23 N -0.962 5.962 24 Si 0.952 3.048 25 H -0.280 1.280 26 H -0.313 1.313 27 H -0.248 1.248 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.102 0.898 32 H 0.121 0.879 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.062 0.938 41 H 0.041 0.959 42 H 0.072 0.928 43 H 0.029 0.971 44 H 0.042 0.958 45 H 0.048 0.952 46 H 0.032 0.968 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.343 21.283 5.835 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.108 4.108 3 N -0.082 5.082 4 O 0.033 5.967 5 C -0.032 4.032 6 C -0.137 4.137 7 C -0.274 4.274 8 C 0.385 3.615 9 O -0.434 6.434 10 N -0.321 5.321 11 C -0.014 4.014 12 C -0.162 4.162 13 C -0.157 4.157 14 C -0.151 4.151 15 C 0.032 3.968 16 H 0.083 0.917 17 C 0.047 3.953 18 N -0.352 5.352 19 C -0.049 4.049 20 C -0.367 4.367 21 H 0.055 0.945 22 C -0.217 4.217 23 N -0.607 5.607 24 Si 0.781 3.219 25 H -0.207 1.207 26 H -0.243 1.243 27 H -0.172 1.172 28 H 0.123 0.877 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.120 0.880 32 H 0.139 0.861 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.108 0.892 36 H 0.121 0.879 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.090 0.910 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.572 22.161 5.337 23.072 hybrid contribution -0.445 -1.754 0.078 1.811 sum -4.017 20.407 5.415 21.492 Atomic orbital electron populations 1.20339 0.83609 1.04514 1.05072 1.25114 0.99597 0.85957 1.00133 1.73589 0.89476 1.23696 1.21422 1.84510 1.21263 1.22717 1.68164 1.25019 0.97935 0.83311 0.96918 1.20637 0.88346 0.99109 1.05656 1.21855 0.93963 0.94539 1.17047 1.17215 0.76464 0.84346 0.83522 1.90854 1.52009 1.67448 1.33118 1.48311 1.69182 1.08204 1.06358 1.21952 1.00997 0.95848 0.82599 1.21883 0.98758 0.94798 1.00765 1.21572 1.02095 0.96146 0.95883 1.21766 0.97829 1.00211 0.95313 1.21938 0.98166 0.77553 0.99118 0.91711 1.21402 0.99996 0.80906 0.93027 1.44483 1.06414 1.02363 1.81984 1.21550 0.86784 0.97780 0.98781 1.18558 0.89267 1.03006 1.25907 0.94504 1.26042 1.00243 0.97396 0.98021 1.69894 1.34540 1.11922 1.44390 0.85921 0.80777 0.78239 0.76935 1.20662 1.24259 1.17197 0.87689 0.88816 0.90396 0.88008 0.86072 0.89510 0.89585 0.89164 0.87862 0.91721 0.91519 0.91554 0.91894 0.94028 0.90977 0.95284 0.93999 0.93398 0.94943 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.33 10.49 71.23 0.75 -0.58 16 2 C 0.05 1.24 7.58 45.15 0.34 1.58 16 3 N -0.37 -8.91 12.01 -44.78 -0.54 -9.45 16 4 O 0.09 2.05 11.06 76.96 0.85 2.91 16 5 C 0.03 0.68 7.55 25.48 0.19 0.87 16 6 C -0.08 -1.26 10.33 71.24 0.74 -0.52 16 7 C -0.27 -6.73 4.19 -18.74 -0.08 -6.81 16 8 C 0.60 18.42 7.32 86.66 0.63 19.06 16 9 O -0.56 -21.70 12.65 -4.04 -0.05 -21.75 16 10 N -0.59 -16.70 2.98 -798.82 -2.38 -19.08 16 11 C 0.11 2.15 6.35 86.36 0.55 2.69 16 12 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 13 C -0.12 -3.14 5.88 30.62 0.18 -2.96 16 14 C -0.11 -4.15 4.45 30.67 0.14 -4.01 16 15 C 0.14 4.86 3.21 44.97 0.14 5.01 16 16 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 17 C 0.17 7.39 3.75 86.38 0.32 7.71 16 18 N -0.63 -30.36 2.48 -726.93 -1.80 -32.16 16 19 C 0.10 4.13 8.38 127.77 1.07 5.20 16 20 C -0.24 -13.40 7.87 84.03 0.66 -12.74 16 21 H 0.04 2.37 8.06 -2.91 -0.02 2.34 16 22 C -0.02 -1.27 4.97 84.86 0.42 -0.85 16 23 N -0.96 -59.68 13.97 21.65 0.30 -59.38 16 24 Si 0.95 45.54 23.61 68.60 1.62 47.16 16 25 H -0.28 -12.89 6.59 99.48 0.66 -12.24 16 26 H -0.31 -15.26 7.11 99.48 0.71 -14.56 16 27 H -0.25 -10.93 6.29 99.48 0.63 -10.30 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.09 1.57 8.11 -2.38 -0.02 1.55 16 34 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 35 H 0.09 1.59 6.32 -2.39 -0.02 1.57 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.07 1.64 8.14 -2.38 -0.02 1.63 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.06 2.84 5.48 -2.39 -0.01 2.83 16 41 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.07 3.13 6.10 -2.39 -0.01 3.12 16 43 H 0.03 1.38 7.19 -2.39 -0.02 1.37 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.05 2.21 4.48 -2.39 -0.01 2.20 16 46 H 0.03 1.29 6.77 -2.39 -0.02 1.27 16 47 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -71.90 363.81 5.08 -66.82 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: 0.83 Total: 13.49 kcal Atomic # 6 Polarization: 5.20 SS G_CDS: 6.25 Total: 11.45 kcal Atomic # 7 Polarization: -115.66 SS G_CDS: -4.42 Total: -120.08 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: 0.80 Total: -18.85 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.62 Total: 47.16 kcal Total: -71.90 5.08 -66.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157504342.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.600 kcal (2) G-P(sol) polarization free energy of solvation -71.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds