Wall clock time and date at job start Tue Mar 31 2020 12:42:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29951 * 126.28847 * 2 1 4 4 O 1.21301 * 110.25318 * 179.67977 * 3 2 1 5 5 C 1.33645 * 109.80855 * 0.48014 * 4 3 2 6 6 C 1.50697 * 126.54882 * 179.79873 * 5 4 3 7 7 C 1.52994 * 109.47041 * 269.68058 * 6 5 4 8 8 C 1.53007 * 109.47221 * 180.02562 * 7 6 5 9 9 C 1.50696 * 109.47054 * 180.02562 * 8 7 6 10 10 O 1.21286 * 120.00306 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00030 * 180.02562 * 9 8 7 12 12 C 1.46926 * 120.63336 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.89109 * 233.68039 * 12 11 9 14 14 C 1.53035 * 109.31327 * 305.29292 * 13 12 11 15 15 C 1.53007 * 109.46118 * 181.38770 * 14 13 12 16 16 C 1.50699 * 109.47144 * 174.99788 * 15 14 13 17 17 H 1.07998 * 120.00041 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99734 * 180.02562 * 16 15 14 19 19 N 1.31514 * 119.99659 * 180.02562 * 18 16 15 20 20 Si 1.86800 * 120.00304 * 0.02562 * 18 16 15 21 21 H 1.48502 * 109.47023 * 89.99989 * 20 18 16 22 22 H 1.48496 * 109.47296 * 210.00080 * 20 18 16 23 23 H 1.48508 * 109.46806 * 330.00272 * 20 18 16 24 24 C 1.53038 * 109.54175 * 61.36680 * 14 13 12 25 25 C 1.47207 * 120.81118 * 0.14238 * 11 9 8 26 26 N 1.31133 * 106.89882 * 359.53191 * 5 4 3 27 27 H 1.08989 * 109.47416 * 270.02025 * 1 2 3 28 28 H 1.09004 * 109.46884 * 30.02636 * 1 2 3 29 29 H 1.09000 * 109.46984 * 150.01778 * 1 2 3 30 30 H 1.09005 * 109.46862 * 149.68176 * 6 5 4 31 31 H 1.08996 * 109.47389 * 29.68547 * 6 5 4 32 32 H 1.09005 * 109.47197 * 60.00323 * 7 6 5 33 33 H 1.09001 * 109.47793 * 300.00168 * 7 6 5 34 34 H 1.08992 * 109.47110 * 60.00093 * 8 7 6 35 35 H 1.09000 * 109.46956 * 299.99698 * 8 7 6 36 36 H 1.09002 * 109.58861 * 113.82042 * 12 11 9 37 37 H 1.08996 * 109.58519 * 353.53933 * 12 11 9 38 38 H 1.09003 * 109.49975 * 65.24379 * 13 12 11 39 39 H 1.09000 * 109.49553 * 185.30642 * 13 12 11 40 40 H 1.09005 * 109.46002 * 301.35718 * 14 13 12 41 41 H 1.08996 * 109.46924 * 295.00300 * 15 14 13 42 42 H 1.09004 * 109.46756 * 54.99920 * 15 14 13 43 43 H 0.96997 * 119.99856 * 180.02562 * 19 18 16 44 44 H 1.09002 * 109.49557 * 58.58503 * 24 14 13 45 45 H 1.08996 * 109.50003 * 178.68400 * 24 14 13 46 46 H 1.08996 * 109.53610 * 6.53286 * 25 11 9 47 47 H 1.09002 * 109.68003 * 246.22753 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0064 5 6 3.5299 -0.6211 0.0006 6 6 4.7970 -1.4369 0.0011 7 6 5.2262 -1.7132 -1.4411 8 6 6.5123 -2.5420 -1.4406 9 6 6.9354 -2.8136 -2.8613 10 8 6.2732 -2.3868 -3.7834 11 7 8.0491 -3.5317 -3.1072 12 6 8.4747 -3.8043 -4.4867 13 6 8.6625 -5.3150 -4.6585 14 6 9.6317 -5.8291 -3.5917 15 6 9.8486 -7.3317 -3.7816 16 6 10.8951 -7.8149 -2.8108 17 1 11.3594 -7.1197 -2.1271 18 6 11.2606 -9.1443 -2.7963 19 7 12.1735 -9.5661 -1.9488 20 14 10.4591 -10.3463 -3.9805 21 1 11.2458 -10.4005 -5.2388 22 1 10.4186 -11.6965 -3.3635 23 1 9.0756 -9.8975 -4.2805 24 6 9.0469 -5.5702 -2.2013 25 6 8.8638 -4.0619 -2.0017 26 7 2.3030 -1.0841 0.0003 27 1 -0.3633 0.0004 1.0275 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8901 -0.5136 30 1 4.6205 -2.3818 0.5151 31 1 5.5841 -0.8853 0.5152 32 1 5.4027 -0.7683 -1.9551 33 1 4.4391 -2.2649 -1.9552 34 1 6.3355 -3.4868 -0.9269 35 1 7.2996 -1.9906 -0.9266 36 1 9.4170 -3.2940 -4.6861 37 1 7.7131 -3.4495 -5.1810 38 1 7.7008 -5.8160 -4.5481 39 1 9.0683 -5.5208 -5.6490 40 1 10.5854 -5.3097 -3.6868 41 1 8.9126 -7.8598 -3.5996 42 1 10.1822 -7.5246 -4.8013 43 1 12.4308 -10.5012 -1.9388 44 1 8.0816 -6.0688 -2.1141 45 1 9.7269 -5.9576 -1.4427 46 1 8.3571 -3.8775 -1.0544 47 1 9.8379 -3.5729 -1.9961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584055329.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:42:52 Heat of formation + Delta-G solvation = 3.714899 kcal Electronic energy + Delta-G solvation = -26345.622220 eV Core-core repulsion = 22530.700290 eV Total energy + Delta-G solvation = -3814.921930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.89429 -40.15734 -37.61801 -36.50189 -35.66510 -34.11144 -32.91954 -32.17027 -30.95547 -29.66813 -28.95287 -28.15239 -24.93264 -24.03238 -23.26594 -22.72870 -21.55228 -21.24098 -19.78267 -18.73884 -18.39867 -17.75608 -17.06085 -16.71315 -16.18876 -15.92736 -15.18695 -14.81699 -14.39216 -14.18360 -13.99741 -13.93168 -13.83261 -13.44369 -13.24724 -13.23372 -13.05979 -12.79543 -12.64232 -12.34532 -12.22540 -12.11516 -11.81479 -11.61574 -11.49160 -11.35091 -11.19128 -11.13340 -10.92413 -10.70226 -10.37709 -10.19448 -9.98694 -9.76441 -9.66529 -9.52339 -9.10948 -8.57350 -8.46683 -6.08475 -4.06016 0.81363 1.88603 2.45318 2.64497 3.05677 3.27636 3.30918 3.35886 3.39225 3.70319 4.30523 4.41682 4.41873 4.54537 4.75643 4.87853 4.95712 4.96806 5.01411 5.08833 5.13475 5.24519 5.26818 5.28315 5.33696 5.39484 5.40581 5.53726 5.58234 5.63739 5.67735 5.74684 5.87524 5.89830 5.97557 6.23279 6.24731 6.38226 6.56267 6.75071 6.81145 6.91234 7.20835 7.39336 7.49382 7.75793 7.84661 8.19836 8.48935 8.95695 9.54834 11.04622 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.002004 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.691426 B =13969.612188 C =14272.271204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.167 3.833 3 N -0.389 5.389 4 O 0.076 5.924 5 C 0.191 3.809 6 C -0.030 4.030 7 C -0.101 4.101 8 C -0.139 4.139 9 C 0.514 3.486 10 O -0.552 6.552 11 N -0.607 5.607 12 C 0.112 3.888 13 C -0.132 4.132 14 C -0.073 4.073 15 C -0.010 4.010 16 C -0.516 4.516 17 H 0.074 0.926 18 C 0.066 3.934 19 N -0.904 5.904 20 Si 0.877 3.123 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.266 1.266 24 C -0.121 4.121 25 C 0.103 3.897 26 N -0.482 5.482 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.114 0.886 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.100 0.900 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.085 0.915 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.015 0.985 42 H 0.011 0.989 43 H 0.262 0.738 44 H 0.058 0.942 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.216 18.223 4.834 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 N -0.098 5.098 4 O 0.018 5.982 5 C -0.030 4.030 6 C -0.069 4.069 7 C -0.140 4.140 8 C -0.179 4.179 9 C 0.302 3.698 10 O -0.431 6.431 11 N -0.340 5.340 12 C -0.011 4.011 13 C -0.170 4.170 14 C -0.091 4.091 15 C -0.047 4.047 16 C -0.554 4.554 17 H 0.092 0.908 18 C -0.135 4.135 19 N -0.543 5.543 20 Si 0.705 3.295 21 H -0.204 1.204 22 H -0.215 1.215 23 H -0.191 1.191 24 C -0.159 4.159 25 C -0.019 4.019 26 N -0.217 5.217 27 H 0.107 0.893 28 H 0.105 0.895 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.083 0.917 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.098 0.902 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -17.111 18.800 4.411 25.801 hybrid contribution -0.031 -0.965 -0.532 1.102 sum -17.142 17.836 3.878 25.040 Atomic orbital electron populations 1.20142 0.82948 1.04751 1.04280 1.25937 1.00664 0.83542 1.00435 1.74640 0.89429 1.23969 1.21767 1.85291 1.22338 1.24869 1.65668 1.28825 0.97066 0.82130 0.94941 1.20353 0.87940 0.98423 1.00156 1.21330 0.97414 1.01731 0.93539 1.21649 0.98624 1.02487 0.95143 1.20520 0.80078 0.77855 0.91357 1.90682 1.53608 1.52245 1.46573 1.48270 1.25345 1.52315 1.08036 1.21630 1.00115 0.96732 0.82578 1.22059 1.00662 0.94008 1.00309 1.21007 0.96763 0.98785 0.92567 1.19623 0.97079 0.91151 0.96859 1.21123 1.20787 0.94487 1.19031 0.90839 1.25028 0.94709 0.98402 0.95377 1.69907 1.31423 1.16008 1.36922 0.86818 0.80630 0.80557 0.81488 1.20388 1.21477 1.19081 1.21920 1.01869 0.92529 0.99581 1.22019 0.95131 0.96195 0.88590 1.71927 0.99782 1.29370 1.20580 0.89315 0.89513 0.88952 0.86812 0.87603 0.90322 0.90100 0.88140 0.88337 0.91735 0.89687 0.92099 0.91156 0.91727 0.96677 0.97049 0.92780 0.92283 0.89085 0.90196 0.91228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.00 0.38 -0.02 16 2 C 0.17 1.72 8.22 -156.37 -1.28 0.44 16 3 N -0.39 -4.44 12.16 30.90 0.38 -4.07 16 4 O 0.08 0.80 11.31 18.10 0.20 1.00 16 5 C 0.19 1.76 7.77 -13.06 -0.10 1.66 16 6 C -0.03 -0.17 5.84 -27.89 -0.16 -0.34 16 7 C -0.10 -0.81 4.49 -26.73 -0.12 -0.93 16 8 C -0.14 -1.10 4.06 -27.88 -0.11 -1.21 16 9 C 0.51 6.50 7.70 -10.99 -0.08 6.41 16 10 O -0.55 -8.96 15.39 5.55 0.09 -8.88 16 11 N -0.61 -7.78 2.98 -172.52 -0.51 -8.29 16 12 C 0.11 1.52 6.42 -3.71 -0.02 1.50 16 13 C -0.13 -2.00 5.36 -26.61 -0.14 -2.15 16 14 C -0.07 -1.28 2.10 -90.58 -0.19 -1.47 16 15 C -0.01 -0.22 3.52 -27.88 -0.10 -0.32 16 16 C -0.52 -13.71 8.94 -34.44 -0.31 -14.01 16 17 H 0.07 2.06 7.30 -52.49 -0.38 1.68 16 18 C 0.07 1.84 5.47 -17.82 -0.10 1.75 16 19 N -0.90 -26.88 13.96 55.43 0.77 -26.11 16 20 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 24 C -0.12 -1.87 5.19 -26.59 -0.14 -2.01 16 25 C 0.10 1.20 6.36 -3.53 -0.02 1.17 16 26 N -0.48 -5.27 11.55 -9.86 -0.11 -5.38 16 27 H 0.09 0.43 8.14 -51.94 -0.42 0.00 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.11 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 34 H 0.10 0.66 7.69 -51.93 -0.40 0.26 16 35 H 0.10 0.55 7.96 -51.93 -0.41 0.13 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 1.21 7.00 -51.93 -0.36 0.85 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 42 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.09 1.57 6.91 -51.93 -0.36 1.21 16 46 H 0.08 0.69 5.97 -51.93 -0.31 0.38 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 LS Contribution 379.18 15.07 5.71 5.71 Total: -1.00 -34.00 379.18 -8.31 -42.31 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -7.65 Total: -3.29 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -2.51 Total: -9.52 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: 0.52 Total: -43.85 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.29 Total: -7.88 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.00 -8.31 -42.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584055329.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.023 kcal (2) G-P(sol) polarization free energy of solvation -34.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds