Wall clock time and date at job start Tue Mar 31 2020 13:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47230 * 2 1 4 4 C 1.50708 * 109.46971 * 120.00238 * 2 1 3 5 5 N 1.30432 * 125.99144 * 300.18021 * 4 2 1 6 6 N 1.39929 * 108.91419 * 180.22976 * 5 4 2 7 7 C 1.46500 * 125.73891 * 179.73467 * 6 5 4 8 8 C 1.34219 * 108.51745 * 359.75347 * 6 5 4 9 9 C 1.38127 * 107.40497 * 359.97438 * 8 6 5 10 10 C 1.47290 * 126.42455 * 179.97438 * 9 8 6 11 11 O 1.21517 * 120.00110 * 180.02562 * 10 9 8 12 12 O 1.34762 * 120.00017 * 0.02562 * 10 9 8 13 13 C 1.45193 * 116.99836 * 180.02562 * 12 10 9 14 14 C 1.53044 * 109.45935 * 270.07146 * 13 12 10 15 15 C 1.53192 * 109.30938 * 178.61745 * 14 13 12 16 16 N 1.46928 * 108.77995 * 54.63516 * 15 14 13 17 17 C 1.36934 * 120.63087 * 126.41074 * 16 15 14 18 18 H 1.08003 * 119.99912 * 331.82975 * 17 16 15 19 19 C 1.38811 * 119.99735 * 151.82845 * 17 16 15 20 20 N 1.31617 * 120.00344 * 343.07225 * 19 17 16 21 21 Si 1.86808 * 119.99669 * 163.07324 * 19 17 16 22 22 H 1.48498 * 109.46987 * 90.00063 * 21 19 17 23 23 H 1.48496 * 109.46695 * 209.99744 * 21 19 17 24 24 H 1.48497 * 109.47143 * 330.00228 * 21 19 17 25 25 C 1.46927 * 118.73821 * 306.39155 * 16 15 14 26 26 C 1.53042 * 109.45877 * 150.00490 * 13 12 10 27 27 H 1.09001 * 109.46791 * 300.00167 * 1 2 3 28 28 H 1.08991 * 109.47085 * 60.00165 * 1 2 3 29 29 H 1.08999 * 109.47002 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47122 * 239.99430 * 2 1 3 31 31 H 1.09002 * 109.46583 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.46952 * 299.99917 * 3 2 1 33 33 H 1.08991 * 109.47265 * 60.00314 * 3 2 1 34 34 H 1.08997 * 109.47221 * 270.02210 * 7 6 5 35 35 H 1.09000 * 109.47324 * 30.02193 * 7 6 5 36 36 H 1.08994 * 109.47189 * 150.02388 * 7 6 5 37 37 H 1.08000 * 126.29490 * 180.02562 * 8 6 5 38 38 H 1.09000 * 109.46403 * 30.03237 * 13 12 10 39 39 H 1.08996 * 109.49942 * 298.56240 * 14 13 12 40 40 H 1.08998 * 109.49849 * 58.67151 * 14 13 12 41 41 H 1.09000 * 109.58772 * 294.84438 * 15 14 13 42 42 H 1.09005 * 109.70518 * 174.49629 * 15 14 13 43 43 H 0.97002 * 119.99944 * 180.02562 * 20 19 17 44 44 H 1.09001 * 109.58254 * 293.82397 * 25 16 15 45 45 H 1.08995 * 109.70612 * 173.46108 * 25 16 15 46 46 H 1.08994 * 109.49743 * 301.33777 * 26 13 12 47 47 H 1.08999 * 109.49793 * 61.40266 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7876 -0.3702 2.4657 6 7 2.4325 -1.2710 3.3205 7 6 2.4078 -1.2284 4.7847 8 6 3.0779 -2.1802 2.5734 9 6 2.8478 -1.8648 1.2485 10 6 3.3617 -2.5909 0.0746 11 8 3.0852 -2.2087 -1.0453 12 8 4.1384 -3.6793 0.2424 13 6 4.6095 -4.3446 -0.9591 14 6 3.5992 -5.4149 -1.3786 15 6 4.0825 -6.0909 -2.6656 16 7 5.4446 -6.5980 -2.4508 17 6 5.7490 -7.9090 -2.7034 18 1 4.9846 -8.6671 -2.6171 19 6 7.0399 -8.2634 -3.0705 20 7 7.8786 -7.3436 -3.4981 21 14 7.5868 -10.0461 -2.9576 22 1 7.2989 -10.7344 -4.2415 23 1 9.0453 -10.0998 -2.6833 24 1 6.8511 -10.7208 -1.8583 25 6 6.4741 -5.6716 -1.9602 26 6 5.9641 -5.0003 -0.6811 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9562 -0.8899 33 1 1.6768 1.9563 0.8899 34 1 3.2383 -0.6212 5.1447 35 1 1.4668 -0.7919 5.1197 36 1 2.4997 -2.2402 5.1792 37 1 3.6679 -3.0069 2.9407 38 1 4.7175 -3.6136 -1.7604 39 1 3.5092 -6.1600 -0.5881 40 1 2.6288 -4.9505 -1.5539 41 1 4.0865 -5.3662 -3.4797 42 1 3.4197 -6.9190 -2.9170 43 1 8.7806 -7.5914 -3.7550 44 1 6.6731 -4.9126 -2.7168 45 1 7.3902 -6.2212 -1.7440 46 1 6.6768 -4.2408 -0.3598 47 1 5.8518 -5.7488 0.1033 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770784603.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:00 Heat of formation + Delta-G solvation = -1.841613 kcal Electronic energy + Delta-G solvation = -27517.580003 eV Core-core repulsion = 23702.417124 eV Total energy + Delta-G solvation = -3815.162879 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68496 -39.82839 -37.35292 -36.12206 -35.43140 -32.85853 -32.57722 -30.78766 -30.21295 -29.53840 -27.34832 -27.22530 -25.28875 -23.69107 -22.49082 -22.22981 -21.84277 -20.36257 -19.39298 -19.10585 -17.64862 -16.95231 -16.66554 -16.05822 -15.64331 -15.29408 -14.84503 -14.78800 -14.64804 -13.99753 -13.67608 -13.55453 -13.50567 -13.23478 -13.10096 -12.93908 -12.73571 -12.59574 -12.39431 -12.23321 -11.59865 -11.49664 -11.29133 -11.24452 -11.17192 -10.99446 -10.95563 -10.72502 -10.66637 -10.35539 -10.16651 -10.01733 -9.83384 -9.62102 -9.60221 -9.39612 -8.91214 -8.48506 -6.71080 -5.80970 -3.23268 1.25672 1.93340 2.04142 3.08627 3.28966 3.37436 3.44281 3.46787 4.05309 4.40611 4.48721 4.56171 4.72403 4.85903 4.98421 5.04922 5.09018 5.27559 5.30914 5.34815 5.41596 5.44084 5.47713 5.55662 5.58269 5.74293 5.77897 5.80144 5.91075 6.04937 6.14406 6.14630 6.26795 6.30366 6.47276 6.49981 6.53151 6.55388 6.62753 6.75964 6.92809 7.03589 7.30335 7.36536 7.59976 7.78496 8.15669 8.42944 9.18880 9.81820 10.38742 11.28285 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.022523 B = 0.002698 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.899908 B =10376.692994 C =11009.596321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.034 4.034 3 C -0.139 4.139 4 C 0.146 3.854 5 N -0.298 5.298 6 N -0.365 5.365 7 C 0.097 3.903 8 C 0.127 3.873 9 C -0.275 4.275 10 C 0.539 3.461 11 O -0.514 6.514 12 O -0.358 6.358 13 C 0.101 3.899 14 C -0.145 4.145 15 C 0.149 3.851 16 N -0.593 5.593 17 C -0.253 4.253 18 H 0.067 0.933 19 C 0.002 3.998 20 N -0.903 5.903 21 Si 0.903 3.097 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.174 3.826 26 C -0.135 4.135 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.117 0.883 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.192 0.808 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.022 0.978 42 H 0.060 0.940 43 H 0.255 0.745 44 H 0.022 0.978 45 H 0.096 0.904 46 H 0.057 0.943 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.100 14.502 15.430 23.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.054 4.054 3 C -0.197 4.197 4 C -0.022 4.022 5 N -0.118 5.118 6 N -0.142 5.142 7 C -0.043 4.043 8 C -0.025 4.025 9 C -0.288 4.288 10 C 0.384 3.616 11 O -0.403 6.403 12 O -0.275 6.275 13 C 0.047 3.953 14 C -0.185 4.185 15 C 0.022 3.978 16 N -0.316 5.316 17 C -0.383 4.383 18 H 0.084 0.916 19 C -0.196 4.196 20 N -0.548 5.548 21 Si 0.733 3.267 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C 0.048 3.952 26 C -0.174 4.174 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.209 0.791 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.040 0.960 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.114 0.886 46 H 0.075 0.925 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.578 15.374 15.983 25.017 hybrid contribution 0.845 -1.551 -0.339 1.799 sum -10.733 13.822 15.643 23.473 Atomic orbital electron populations 1.21774 0.93750 1.02070 1.02068 1.20029 0.96154 0.95848 0.93370 1.21774 1.01214 0.94605 1.02078 1.22427 0.93649 0.92524 0.93572 1.77154 1.20291 1.14514 0.99870 1.48351 1.37526 1.21103 1.07232 1.22002 1.04719 1.04310 0.73315 1.23302 0.94439 0.93996 0.90777 1.19479 1.14341 1.03572 0.91436 1.19930 0.75685 0.78381 0.87599 1.90741 1.56815 1.66953 1.25827 1.86580 1.61316 1.39525 1.40037 1.22907 0.95097 0.93070 0.84203 1.22453 0.97325 0.97717 1.00993 1.20864 0.88098 0.96351 0.92474 1.44119 1.04595 1.07724 1.75124 1.19182 0.95548 0.83142 1.40421 0.91576 1.25063 0.98292 0.97518 0.98742 1.70018 1.06595 1.32283 1.45856 0.86292 0.77703 0.84779 0.77965 1.21364 1.21540 1.20460 1.20799 0.93394 0.91730 0.89256 1.22451 0.93054 0.99264 1.02651 0.92417 0.91833 0.92633 0.86464 0.92644 0.91829 0.92406 0.90155 0.88872 0.88893 0.79067 0.90249 0.91511 0.92584 0.96014 0.92168 0.93545 0.95989 0.88631 0.92452 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 2 C -0.03 -0.41 3.26 -91.77 -0.30 -0.71 16 3 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 4 C 0.15 1.94 5.77 -82.00 -0.47 1.46 16 5 N -0.30 -3.68 12.50 33.90 0.42 -3.25 16 6 N -0.36 -3.57 3.98 -67.59 -0.27 -3.84 16 7 C 0.10 0.46 11.44 59.85 0.68 1.15 16 8 C 0.13 1.34 11.33 -16.55 -0.19 1.15 16 9 C -0.28 -3.82 6.13 -105.08 -0.64 -4.47 16 10 C 0.54 8.90 7.93 34.41 0.27 9.18 16 11 O -0.51 -9.50 13.83 -19.28 -0.27 -9.77 16 12 O -0.36 -6.06 9.71 -40.66 -0.39 -6.45 16 13 C 0.10 1.90 2.42 -26.69 -0.06 1.83 16 14 C -0.15 -2.75 5.72 -26.61 -0.15 -2.90 16 15 C 0.15 3.22 6.52 -3.71 -0.02 3.20 16 16 N -0.59 -14.95 2.99 -172.31 -0.52 -15.47 16 17 C -0.25 -6.93 9.58 -15.06 -0.14 -7.07 16 18 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 19 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 20 N -0.90 -26.01 11.19 55.49 0.62 -25.39 16 21 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 22 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 25 C 0.17 4.15 5.30 -3.71 -0.02 4.13 16 26 C -0.13 -2.63 5.74 -26.61 -0.15 -2.78 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.12 1.65 5.61 -51.93 -0.29 1.35 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.19 1.46 8.06 -52.49 -0.42 1.04 16 38 H 0.08 1.59 7.16 -51.93 -0.37 1.22 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.26 7.93 -51.93 -0.41 0.85 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.10 2.51 6.07 -51.93 -0.31 2.19 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 382.65 15.07 5.77 5.77 Total: -1.00 -32.69 382.65 -7.97 -40.67 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -7.70 Total: -0.67 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.61 Total: 1.96 kcal Atomic # 7 Polarization: -48.21 SS G_CDS: 0.26 Total: -47.95 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -0.66 Total: -16.22 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.69 -7.97 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770784603.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.824 kcal (2) G-P(sol) polarization free energy of solvation -32.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds