Wall clock time and date at job start Tue Mar 31 2020 12:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.65801 * 2 1 4 4 C 1.54882 * 110.75550 * 296.99684 * 3 2 1 5 5 C 1.54267 * 104.19717 * 203.73879 * 4 3 2 6 6 C 1.53883 * 106.59717 * 23.61204 * 5 4 3 7 7 C 1.54268 * 106.59618 * 359.97438 * 6 5 4 8 8 N 1.47307 * 110.70312 * 237.14451 * 2 1 3 9 9 C 1.34521 * 106.62076 * 241.77217 * 8 2 1 10 10 O 1.21541 * 123.77255 * 179.76867 * 9 8 2 11 11 N 1.33788 * 112.45915 * 359.76391 * 9 8 2 12 12 C 1.46502 * 124.18021 * 180.02562 * 11 9 8 13 13 N 1.46501 * 109.47074 * 269.96030 * 12 11 9 14 14 C 1.36943 * 119.99745 * 270.00209 * 13 12 11 15 15 H 1.08000 * 120.00129 * 141.26665 * 14 13 12 16 16 C 1.38813 * 119.99784 * 321.25685 * 14 13 12 17 17 N 1.31615 * 120.00219 * 339.61654 * 16 14 13 18 18 Si 1.86795 * 119.99638 * 159.60629 * 16 14 13 19 19 H 1.48496 * 109.47257 * 60.00669 * 18 16 14 20 20 H 1.48506 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47739 * 300.00255 * 18 16 14 22 22 C 1.46498 * 120.00171 * 89.99705 * 13 12 11 23 23 C 1.52998 * 117.50032 * 183.17527 * 22 13 12 24 24 C 1.53000 * 117.49607 * 114.51488 * 22 13 12 25 25 C 1.34765 * 111.64559 * 359.97438 * 11 9 8 26 26 O 1.21230 * 127.16040 * 179.97438 * 25 11 9 27 27 H 1.08998 * 109.46896 * 302.40797 * 1 2 3 28 28 H 1.08998 * 109.46624 * 62.40226 * 1 2 3 29 29 H 1.08996 * 109.46874 * 182.40619 * 1 2 3 30 30 H 1.09008 * 110.66852 * 60.43508 * 3 2 1 31 31 H 1.08994 * 110.48926 * 322.41546 * 4 3 2 32 32 H 1.09001 * 110.48924 * 85.06208 * 4 3 2 33 33 H 1.08997 * 110.03549 * 264.32668 * 5 4 3 34 34 H 1.08999 * 110.07483 * 142.91316 * 5 4 3 35 35 H 1.08998 * 110.02881 * 240.71487 * 6 5 4 36 36 H 1.08994 * 110.07346 * 119.30794 * 6 5 4 37 37 H 1.09003 * 110.48538 * 217.71655 * 7 6 5 38 38 H 1.08997 * 110.59952 * 95.12458 * 7 6 5 39 39 H 0.97008 * 126.69049 * 61.49779 * 8 2 1 40 40 H 1.09005 * 109.46899 * 29.95698 * 12 11 9 41 41 H 1.08999 * 109.47636 * 149.95685 * 12 11 9 42 42 H 0.97005 * 120.00103 * 184.76419 * 17 16 14 43 43 H 1.09005 * 115.55108 * 328.84761 * 22 13 12 44 44 H 1.09006 * 117.49570 * 0.02562 * 23 22 13 45 45 H 1.08995 * 117.50083 * 145.01860 * 23 22 13 46 46 H 1.08998 * 117.49692 * 214.97556 * 24 22 13 47 47 H 1.08991 * 117.50237 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 6 1.6482 2.1772 -1.2905 5 6 2.7049 3.2902 -1.4467 6 6 3.9561 2.8185 -0.6851 7 6 3.6157 1.4357 -0.0921 8 7 2.0508 -0.7476 -1.1575 9 6 2.7571 -1.7799 -0.6627 10 8 3.3229 -2.6044 -1.3536 11 7 2.7673 -1.7977 0.6750 12 6 3.4588 -2.8082 1.4795 13 7 2.5498 -3.9255 1.7467 14 6 1.7564 -3.9108 2.8628 15 1 0.7434 -4.2818 2.8102 16 6 2.2541 -3.4193 4.0617 17 7 3.5541 -3.3445 4.2533 18 14 1.0789 -2.8638 5.4032 19 1 0.2198 -4.0039 5.8120 20 1 1.8557 -2.3839 6.5743 21 1 0.2268 -1.7613 4.8896 22 6 2.4894 -5.0585 0.8200 23 6 1.4676 -6.1585 1.1145 24 6 2.9594 -6.4197 1.3369 25 6 2.0638 -0.7707 1.1912 26 8 1.8892 -0.5189 2.3642 27 1 -0.3633 0.5508 0.8676 28 1 -0.3632 0.4761 -0.9107 29 1 -0.3633 -1.0267 0.0431 30 1 1.7346 1.9692 0.8871 31 1 1.6749 1.5030 -2.1465 32 1 0.6540 2.6087 -1.1744 33 1 2.3341 4.2203 -1.0160 34 1 2.9422 3.4356 -2.5006 35 1 4.1924 3.5197 0.1152 36 1 4.8007 2.7344 -1.3688 37 1 4.0575 1.3261 0.8983 38 1 3.9599 0.6399 -0.7526 39 1 1.9084 -0.5387 -2.0941 40 1 4.3308 -3.1713 0.9354 41 1 3.7777 -2.3656 2.4231 42 1 3.9022 -3.0666 5.1150 43 1 2.6868 -4.8218 -0.2256 44 1 0.8398 -6.0389 1.9976 45 1 0.9928 -6.6456 0.2628 46 1 3.4654 -7.0786 0.6313 47 1 3.3130 -6.4724 2.3665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000802726591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:20 Heat of formation + Delta-G solvation = -1.156605 kcal Electronic energy + Delta-G solvation = -29673.737922 eV Core-core repulsion = 25858.604747 eV Total energy + Delta-G solvation = -3815.133175 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.98414 -38.36652 -37.70455 -36.91082 -35.40921 -34.35272 -32.86014 -30.92237 -30.10962 -28.90146 -27.87000 -26.11032 -24.17367 -23.46351 -21.90058 -21.36410 -20.56605 -20.05832 -19.80315 -19.44389 -17.37672 -16.74658 -16.28384 -15.86697 -15.66845 -15.36016 -15.03390 -14.72799 -14.43703 -14.30670 -13.76566 -13.68875 -13.45308 -13.24933 -13.14914 -12.72994 -12.45318 -12.29288 -11.88045 -11.48772 -11.37973 -11.29454 -11.16895 -11.03013 -10.88722 -10.76751 -10.72414 -10.57447 -10.52571 -10.41617 -10.07409 -10.05507 -9.66320 -9.47678 -9.26392 -9.10402 -8.83412 -8.53025 -6.70606 -5.99205 -3.53561 2.37455 2.98223 3.36725 3.42886 3.50307 3.65484 3.77421 4.27233 4.42382 4.45657 4.51780 4.70871 4.94334 4.95671 5.13547 5.23484 5.32207 5.34713 5.41023 5.44496 5.47816 5.59448 5.66107 5.71098 5.76498 5.83461 5.93994 5.97541 5.99861 6.11012 6.12574 6.12802 6.23111 6.25537 6.29220 6.41984 6.51917 6.68106 6.74269 7.06134 7.16368 7.21092 7.24173 7.75687 7.90733 8.22609 8.39768 8.82268 9.00408 9.63048 10.18350 11.07710 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.005316 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.077058 B = 5265.898455 C = 6230.514848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.121 3.879 3 C -0.084 4.084 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.121 4.121 7 C -0.126 4.126 8 N -0.730 5.730 9 C 0.700 3.300 10 O -0.561 6.561 11 N -0.574 5.574 12 C 0.351 3.649 13 N -0.531 5.531 14 C -0.281 4.281 15 H 0.064 0.936 16 C 0.039 3.961 17 N -0.886 5.886 18 Si 0.906 3.094 19 H -0.283 1.283 20 H -0.289 1.289 21 H -0.273 1.273 22 C 0.111 3.889 23 C -0.194 4.194 24 C -0.211 4.211 25 C 0.531 3.469 26 O -0.454 6.454 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.096 0.904 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.426 0.574 40 H 0.067 0.933 41 H 0.132 0.868 42 H 0.262 0.738 43 H 0.097 0.903 44 H 0.097 0.903 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.901 11.518 -10.924 16.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.030 3.970 3 C -0.104 4.104 4 C -0.151 4.151 5 C -0.160 4.160 6 C -0.158 4.158 7 C -0.164 4.164 8 N -0.394 5.394 9 C 0.401 3.599 10 O -0.436 6.436 11 N -0.324 5.324 12 C 0.145 3.855 13 N -0.247 5.247 14 C -0.409 4.409 15 H 0.082 0.918 16 C -0.163 4.163 17 N -0.526 5.526 18 Si 0.734 3.266 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.199 1.199 22 C 0.003 3.997 23 C -0.232 4.232 24 C -0.252 4.252 25 C 0.315 3.685 26 O -0.322 6.322 27 H 0.097 0.903 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.269 0.731 40 H 0.085 0.915 41 H 0.150 0.850 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.116 0.884 45 H 0.092 0.908 46 H 0.090 0.910 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.489 11.199 -10.335 15.441 hybrid contribution -0.706 0.213 0.279 0.789 sum -3.195 11.411 -10.056 15.542 Atomic orbital electron populations 1.21905 0.91171 1.03695 1.03248 1.21429 0.96367 0.93147 0.86082 1.22309 0.96126 0.92246 0.99710 1.22362 0.98784 0.97091 0.96912 1.22109 0.95361 0.98292 1.00246 1.22079 0.97729 0.96603 0.99438 1.22461 0.94602 0.97651 1.01647 1.45772 1.55990 1.29436 1.08252 1.16320 0.79074 0.81457 0.83070 1.90911 1.49416 1.41588 1.61718 1.48893 1.48859 1.27979 1.06718 1.21722 0.87583 0.81170 0.95063 1.43819 1.45670 1.12983 1.22265 1.18894 0.93627 1.41789 0.86636 0.91846 1.25181 0.95416 0.98454 0.97283 1.69788 1.11207 1.47809 1.23801 0.86332 0.80616 0.79119 0.80512 1.20932 1.21471 1.19892 1.21440 1.01248 0.83554 0.93455 1.23030 0.92856 1.04640 1.02660 1.23285 0.96294 1.03134 1.02456 1.20514 0.77803 0.80926 0.89224 1.90774 1.55690 1.69293 1.16484 0.90313 0.91120 0.91368 0.88557 0.91563 0.91238 0.91849 0.91911 0.91851 0.91898 0.91347 0.91033 0.73136 0.91485 0.85039 0.92814 0.88549 0.88418 0.90811 0.91008 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.76 37.16 0.33 -1.42 16 2 C 0.12 1.71 0.78 -132.09 -0.10 1.60 16 3 C -0.08 -0.98 2.41 -88.64 -0.21 -1.20 16 4 C -0.11 -0.99 5.36 -25.08 -0.13 -1.12 16 5 C -0.12 -1.01 6.80 -25.61 -0.17 -1.19 16 6 C -0.12 -1.17 6.80 -25.61 -0.17 -1.35 16 7 C -0.13 -1.55 5.64 -25.08 -0.14 -1.69 16 8 N -0.73 -10.18 4.59 -52.94 -0.24 -10.43 16 9 C 0.70 13.13 8.10 -88.03 -0.71 12.41 16 10 O -0.56 -11.98 16.84 5.33 0.09 -11.89 16 11 N -0.57 -11.84 2.84 -124.23 -0.35 -12.20 16 12 C 0.35 8.34 5.89 -63.75 -0.38 7.97 16 13 N -0.53 -13.20 2.99 -169.34 -0.51 -13.71 16 14 C -0.28 -7.51 8.50 -15.06 -0.13 -7.64 16 15 H 0.06 1.73 6.72 -52.49 -0.35 1.38 16 16 C 0.04 1.06 4.97 -17.43 -0.09 0.98 16 17 N -0.89 -24.75 11.49 55.49 0.64 -24.11 16 18 Si 0.91 22.15 29.60 -169.99 -5.03 17.12 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.27 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.11 2.51 6.56 -67.93 -0.45 2.06 16 23 C -0.19 -3.98 9.80 -26.69 -0.26 -4.24 16 24 C -0.21 -4.45 10.36 -26.69 -0.28 -4.72 16 25 C 0.53 10.40 6.40 -10.55 -0.07 10.33 16 26 O -0.45 -10.47 17.76 5.60 0.10 -10.37 16 27 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.07 0.65 7.53 -51.93 -0.39 0.26 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.10 1.16 8.14 -51.92 -0.42 0.73 16 31 H 0.07 0.54 6.74 -51.93 -0.35 0.19 16 32 H 0.07 0.53 8.12 -51.93 -0.42 0.10 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.97 6.69 -51.93 -0.35 0.62 16 39 H 0.43 4.72 7.96 -40.82 -0.32 4.39 16 40 H 0.07 1.58 7.79 -51.93 -0.40 1.17 16 41 H 0.13 3.48 5.43 -51.93 -0.28 3.20 16 42 H 0.26 7.13 8.32 -40.82 -0.34 6.79 16 43 H 0.10 2.18 7.50 -51.93 -0.39 1.79 16 44 H 0.10 2.16 6.45 -51.93 -0.33 1.82 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.09 2.20 8.14 -51.93 -0.42 1.78 16 LS Contribution 373.36 15.07 5.63 5.63 Total: -1.00 -30.51 373.36 -10.03 -40.55 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.38 Total: 8.61 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -2.97 Total: 10.80 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.47 Total: -60.44 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.19 Total: -22.26 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.03 Total: 17.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.51 -10.03 -40.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802726591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.390 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds