Wall clock time and date at job start Tue Mar 31 2020 12:27:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 110.65801 * 2 1 4 4 C 1.54882 * 110.75550 * 296.99684 * 3 2 1 5 5 C 1.54267 * 104.19717 * 203.73879 * 4 3 2 6 6 C 1.53883 * 106.59717 * 23.61204 * 5 4 3 7 7 C 1.54268 * 106.59618 * 359.97438 * 6 5 4 8 8 N 1.47307 * 110.70312 * 237.14451 * 2 1 3 9 9 C 1.34521 * 106.62076 * 241.77217 * 8 2 1 10 10 O 1.21541 * 123.77255 * 179.76867 * 9 8 2 11 11 N 1.33788 * 112.45915 * 359.76391 * 9 8 2 12 12 C 1.46502 * 124.18021 * 180.02562 * 11 9 8 13 13 N 1.46501 * 109.47074 * 269.96030 * 12 11 9 14 14 C 1.36943 * 119.99745 * 270.00209 * 13 12 11 15 15 H 1.08000 * 120.00129 * 141.26665 * 14 13 12 16 16 C 1.38813 * 119.99784 * 321.25685 * 14 13 12 17 17 N 1.31615 * 120.00219 * 339.61654 * 16 14 13 18 18 Si 1.86795 * 119.99638 * 159.60629 * 16 14 13 19 19 H 1.48496 * 109.47257 * 60.00669 * 18 16 14 20 20 H 1.48506 * 109.46983 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47739 * 300.00255 * 18 16 14 22 22 C 1.46498 * 120.00171 * 89.99705 * 13 12 11 23 23 C 1.52998 * 117.50032 * 183.17527 * 22 13 12 24 24 C 1.53000 * 117.49607 * 114.51488 * 22 13 12 25 25 C 1.34765 * 111.64559 * 359.97438 * 11 9 8 26 26 O 1.21230 * 127.16040 * 179.97438 * 25 11 9 27 27 H 1.08998 * 109.46896 * 302.40797 * 1 2 3 28 28 H 1.08998 * 109.46624 * 62.40226 * 1 2 3 29 29 H 1.08996 * 109.46874 * 182.40619 * 1 2 3 30 30 H 1.09008 * 110.66852 * 60.43508 * 3 2 1 31 31 H 1.08994 * 110.48926 * 322.41546 * 4 3 2 32 32 H 1.09001 * 110.48924 * 85.06208 * 4 3 2 33 33 H 1.08997 * 110.03549 * 264.32668 * 5 4 3 34 34 H 1.08999 * 110.07483 * 142.91316 * 5 4 3 35 35 H 1.08998 * 110.02881 * 240.71487 * 6 5 4 36 36 H 1.08994 * 110.07346 * 119.30794 * 6 5 4 37 37 H 1.09003 * 110.48538 * 217.71655 * 7 6 5 38 38 H 1.08997 * 110.59952 * 95.12458 * 7 6 5 39 39 H 0.97008 * 126.69049 * 61.49779 * 8 2 1 40 40 H 1.09005 * 109.46899 * 29.95698 * 12 11 9 41 41 H 1.08999 * 109.47636 * 149.95685 * 12 11 9 42 42 H 0.97005 * 120.00103 * 184.76419 * 17 16 14 43 43 H 1.09005 * 115.55108 * 328.84761 * 22 13 12 44 44 H 1.09006 * 117.49570 * 0.02562 * 23 22 13 45 45 H 1.08995 * 117.50083 * 145.01860 * 23 22 13 46 46 H 1.08998 * 117.49692 * 214.97556 * 24 22 13 47 47 H 1.08991 * 117.50237 * 0.02562 * 24 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0698 1.4317 0.0000 4 6 1.6482 2.1772 -1.2905 5 6 2.7049 3.2902 -1.4467 6 6 3.9561 2.8185 -0.6851 7 6 3.6157 1.4357 -0.0921 8 7 2.0508 -0.7476 -1.1575 9 6 2.7571 -1.7799 -0.6627 10 8 3.3229 -2.6044 -1.3536 11 7 2.7673 -1.7977 0.6750 12 6 3.4588 -2.8082 1.4795 13 7 2.5498 -3.9255 1.7467 14 6 1.7564 -3.9108 2.8628 15 1 0.7434 -4.2818 2.8102 16 6 2.2541 -3.4193 4.0617 17 7 3.5541 -3.3445 4.2533 18 14 1.0789 -2.8638 5.4032 19 1 0.2198 -4.0039 5.8120 20 1 1.8557 -2.3839 6.5743 21 1 0.2268 -1.7613 4.8896 22 6 2.4894 -5.0585 0.8200 23 6 1.4676 -6.1585 1.1145 24 6 2.9594 -6.4197 1.3369 25 6 2.0638 -0.7707 1.1912 26 8 1.8892 -0.5189 2.3642 27 1 -0.3633 0.5508 0.8676 28 1 -0.3632 0.4761 -0.9107 29 1 -0.3633 -1.0267 0.0431 30 1 1.7346 1.9692 0.8871 31 1 1.6749 1.5030 -2.1465 32 1 0.6540 2.6087 -1.1744 33 1 2.3341 4.2203 -1.0160 34 1 2.9422 3.4356 -2.5006 35 1 4.1924 3.5197 0.1152 36 1 4.8007 2.7344 -1.3688 37 1 4.0575 1.3261 0.8983 38 1 3.9599 0.6399 -0.7526 39 1 1.9084 -0.5387 -2.0941 40 1 4.3308 -3.1713 0.9354 41 1 3.7777 -2.3656 2.4231 42 1 3.9022 -3.0666 5.1150 43 1 2.6868 -4.8218 -0.2256 44 1 0.8398 -6.0389 1.9976 45 1 0.9928 -6.6456 0.2628 46 1 3.4654 -7.0786 0.6313 47 1 3.3130 -6.4724 2.3665 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000802726591.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:19 Heat of formation + Delta-G solvation = -18.994712 kcal Electronic energy + Delta-G solvation = -29674.511440 eV Core-core repulsion = 25858.604747 eV Total energy + Delta-G solvation = -3815.906693 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.44613 -39.62472 -39.23162 -38.59859 -36.86096 -35.96603 -34.68288 -32.40526 -31.76176 -29.73383 -28.75960 -27.96720 -25.87770 -25.04549 -23.25863 -23.03603 -21.99920 -21.43746 -20.93640 -20.76519 -18.92332 -18.47384 -17.77279 -17.35747 -17.14994 -16.72657 -16.53443 -16.26787 -16.13714 -15.79959 -15.59076 -15.05381 -14.73910 -14.42992 -14.30247 -14.12788 -13.75058 -13.51326 -13.36929 -13.29857 -12.98091 -12.72341 -12.50847 -12.40201 -12.24202 -12.11667 -11.99478 -11.96541 -11.85987 -11.73470 -11.60005 -11.47876 -11.22871 -11.17753 -10.82389 -10.65134 -10.57724 -10.32481 -8.67642 -8.05818 -5.62673 0.83403 1.34725 1.44488 1.49186 1.54804 2.15399 2.32463 2.43645 3.03559 3.11897 3.31888 3.40016 3.45774 3.57473 3.79174 4.01707 4.16729 4.23257 4.24892 4.42143 4.48482 4.53594 4.54207 4.60115 4.62917 4.67703 4.71979 4.76881 4.86230 4.87359 4.92257 4.97580 5.03188 5.11408 5.14223 5.22501 5.25621 5.30498 5.31482 5.40417 5.49004 5.53043 5.62919 5.94890 6.29201 6.41621 6.69865 6.97161 7.31228 7.62310 8.16492 8.99152 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.014407 B = 0.005316 C = 0.004493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.077058 B = 5265.898455 C = 6230.514848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.136 3.864 3 C -0.082 4.082 4 C -0.106 4.106 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.130 4.130 8 N -0.700 5.700 9 C 0.699 3.301 10 O -0.588 6.588 11 N -0.585 5.585 12 C 0.363 3.637 13 N -0.546 5.546 14 C -0.278 4.278 15 H 0.056 0.944 16 C 0.000 4.000 17 N -0.910 5.910 18 Si 0.951 3.049 19 H -0.271 1.271 20 H -0.289 1.289 21 H -0.282 1.282 22 C 0.090 3.910 23 C -0.174 4.174 24 C -0.202 4.202 25 C 0.518 3.482 26 O -0.498 6.498 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.039 0.961 38 H 0.057 0.943 39 H 0.445 0.555 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.258 0.742 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.102 0.898 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.755 12.992 -13.445 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.045 3.955 3 C -0.102 4.102 4 C -0.143 4.143 5 C -0.155 4.155 6 C -0.156 4.156 7 C -0.168 4.168 8 N -0.366 5.366 9 C 0.400 3.600 10 O -0.465 6.465 11 N -0.334 5.334 12 C 0.156 3.844 13 N -0.264 5.264 14 C -0.407 4.407 15 H 0.074 0.926 16 C -0.200 4.200 17 N -0.552 5.552 18 Si 0.779 3.221 19 H -0.197 1.197 20 H -0.215 1.215 21 H -0.208 1.208 22 C -0.018 4.018 23 C -0.212 4.212 24 C -0.242 4.242 25 C 0.306 3.694 26 O -0.369 6.369 27 H 0.100 0.900 28 H 0.133 0.867 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.096 0.904 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.057 0.943 38 H 0.076 0.924 39 H 0.293 0.707 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.067 0.933 43 H 0.115 0.885 44 H 0.098 0.902 45 H 0.126 0.874 46 H 0.120 0.880 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.376 12.706 -12.917 18.639 hybrid contribution -0.073 -0.236 1.014 1.044 sum -4.449 12.469 -11.903 17.803 Atomic orbital electron populations 1.21964 0.88840 1.03124 1.05733 1.21479 0.97721 0.93483 0.82786 1.22359 0.95395 0.90496 1.01917 1.22395 1.00100 0.96980 0.94871 1.22107 0.94023 0.98459 1.00954 1.22070 0.99054 0.94715 0.99718 1.22456 0.95273 0.99142 0.99944 1.45530 1.54211 1.27561 1.09257 1.16258 0.79437 0.82210 0.82131 1.90890 1.50753 1.42959 1.61937 1.48509 1.49155 1.27996 1.07748 1.21126 0.87714 0.81559 0.94042 1.43852 1.45778 1.14270 1.22520 1.18929 0.93406 1.41114 0.87262 0.92649 1.25709 0.96366 0.99024 0.98916 1.69898 1.12328 1.49147 1.23855 0.85609 0.79196 0.78650 0.78670 1.19651 1.21527 1.20807 1.21533 1.03608 0.83565 0.93068 1.23028 0.92266 1.02941 1.03011 1.23207 0.97124 1.02493 1.01391 1.21445 0.76945 0.80799 0.90252 1.90736 1.57114 1.70306 1.18714 0.89975 0.86666 0.93305 0.88668 0.90441 0.88886 0.90665 0.90361 0.91711 0.91465 0.94253 0.92448 0.70743 0.92163 0.88029 0.93280 0.88459 0.90179 0.87377 0.88012 0.91694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 8.76 71.98 0.63 -2.39 16 2 C 0.14 3.63 0.78 2.99 0.00 3.63 16 3 C -0.08 -1.75 2.41 -9.51 -0.02 -1.77 16 4 C -0.11 -1.36 5.36 31.67 0.17 -1.19 16 5 C -0.12 -1.47 6.80 31.32 0.21 -1.26 16 6 C -0.12 -2.05 6.80 31.32 0.21 -1.84 16 7 C -0.13 -3.15 5.64 31.66 0.18 -2.97 16 8 N -0.70 -18.22 4.59 -439.82 -2.02 -20.24 16 9 C 0.70 26.14 8.10 179.44 1.45 27.59 16 10 O -0.59 -25.08 16.84 -3.84 -0.06 -25.15 16 11 N -0.58 -24.86 2.84 -784.19 -2.23 -27.09 16 12 C 0.36 18.13 5.89 170.96 1.01 19.14 16 13 N -0.55 -28.01 2.99 -689.67 -2.06 -30.07 16 14 C -0.28 -15.30 8.50 84.03 0.71 -14.59 16 15 H 0.06 3.10 6.72 -2.91 -0.02 3.08 16 16 C 0.00 -0.03 4.97 84.86 0.42 0.40 16 17 N -0.91 -53.10 11.49 21.65 0.25 -52.85 16 18 Si 0.95 46.61 29.60 68.60 2.03 48.64 16 19 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 20 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 21 H -0.28 -14.09 7.11 99.48 0.71 -13.39 16 22 C 0.09 4.07 6.56 44.99 0.30 4.36 16 23 C -0.17 -6.99 9.80 30.62 0.30 -6.69 16 24 C -0.20 -8.42 10.36 30.62 0.32 -8.10 16 25 C 0.52 20.76 6.40 87.94 0.56 21.32 16 26 O -0.50 -23.86 17.76 -2.88 -0.05 -23.91 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.11 1.52 7.53 -2.39 -0.02 1.50 16 29 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 31 H 0.08 0.85 6.74 -2.39 -0.02 0.84 16 32 H 0.09 0.86 8.12 -2.39 -0.02 0.84 16 33 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.06 1.53 6.69 -2.39 -0.02 1.51 16 39 H 0.45 8.36 7.96 -92.70 -0.74 7.62 16 40 H 0.06 3.00 7.79 -2.38 -0.02 2.99 16 41 H 0.10 5.74 5.43 -2.39 -0.01 5.73 16 42 H 0.26 14.65 8.32 -92.70 -0.77 13.88 16 43 H 0.10 4.39 7.50 -2.38 -0.02 4.37 16 44 H 0.08 3.51 6.45 -2.38 -0.02 3.50 16 45 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 46 H 0.10 3.60 8.14 -2.39 -0.02 3.59 16 47 H 0.06 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -70.17 373.36 2.55 -67.62 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.24 Total: 27.41 kcal Atomic # 6 Polarization: 29.19 SS G_CDS: 6.46 Total: 35.65 kcal Atomic # 7 Polarization: -124.19 SS G_CDS: -6.06 Total: -130.25 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -0.12 Total: -49.06 kcal Atomic # 14 Polarization: 46.61 SS G_CDS: 2.03 Total: 48.64 kcal Total: -70.17 2.55 -67.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000802726591.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.620 kcal (2) G-P(sol) polarization free energy of solvation -70.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds