Wall clock time and date at job start Tue Mar 31 2020 12:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 110.65213 * 2 1 4 4 C 1.53001 * 117.50096 * 16.53770 * 3 2 1 5 5 C 1.52999 * 117.49957 * 307.91098 * 3 2 1 6 6 N 1.47308 * 110.69860 * 237.14664 * 2 1 3 7 7 C 1.34523 * 106.61978 * 241.76580 * 6 2 1 8 8 O 1.21538 * 123.77372 * 179.76778 * 7 6 2 9 9 N 1.33795 * 112.45569 * 359.77017 * 7 6 2 10 10 C 1.46497 * 124.17849 * 180.02562 * 9 7 6 11 11 N 1.46905 * 109.47308 * 269.96089 * 10 9 7 12 12 C 1.46846 * 110.99975 * 30.78555 * 11 10 9 13 13 C 1.53032 * 109.52351 * 185.84071 * 12 11 10 14 14 C 1.53116 * 109.28100 * 300.82447 * 13 12 11 15 15 C 1.53124 * 109.16117 * 57.65401 * 14 13 12 16 16 H 1.08996 * 109.53310 * 62.30719 * 15 14 13 17 17 C 1.50697 * 109.50222 * 182.40976 * 15 14 13 18 18 H 1.07994 * 120.00589 * 119.80566 * 17 15 14 19 19 C 1.37884 * 119.99812 * 299.79767 * 17 15 14 20 20 N 1.31514 * 119.99955 * 0.02562 * 19 17 15 21 21 Si 1.86800 * 120.00017 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47196 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47077 * 120.00136 * 21 19 17 24 24 H 1.48506 * 109.47099 * 240.00320 * 21 19 17 25 25 C 1.46845 * 111.00275 * 155.00003 * 11 10 9 26 26 C 1.34773 * 111.64536 * 359.97438 * 9 7 6 27 27 O 1.21233 * 127.15617 * 179.97438 * 26 9 7 28 28 H 1.09003 * 109.47417 * 297.79013 * 1 2 3 29 29 H 1.09005 * 109.47202 * 57.78578 * 1 2 3 30 30 H 1.08997 * 109.47233 * 177.78432 * 1 2 3 31 31 H 1.09005 * 115.54767 * 162.24266 * 3 2 1 32 32 H 1.09002 * 117.50020 * 359.97438 * 4 3 2 33 33 H 1.09004 * 117.49869 * 145.02054 * 4 3 2 34 34 H 1.08999 * 117.49793 * 214.97899 * 5 3 2 35 35 H 1.08996 * 117.50230 * 0.02562 * 5 3 2 36 36 H 0.97003 * 126.69492 * 61.50085 * 6 2 1 37 37 H 1.09003 * 109.47604 * 29.95976 * 10 9 7 38 38 H 1.09002 * 109.47504 * 149.95753 * 10 9 7 39 39 H 1.08995 * 109.46326 * 305.86181 * 12 11 10 40 40 H 1.09003 * 109.46083 * 65.82756 * 12 11 10 41 41 H 1.09002 * 109.50578 * 180.88171 * 13 12 11 42 42 H 1.08999 * 109.53461 * 60.78590 * 13 12 11 43 43 H 1.09002 * 109.52368 * 297.75029 * 14 13 12 44 44 H 1.09002 * 109.52485 * 177.56160 * 14 13 12 45 45 H 0.96996 * 119.99826 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.46317 * 294.17949 * 25 11 10 47 47 H 1.09007 * 109.46114 * 54.15303 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0696 1.4317 0.0000 4 6 1.1014 2.5516 0.3863 5 6 1.5385 2.3869 -1.0707 6 7 2.0506 -0.7475 -1.1576 7 6 2.7571 -1.7799 -0.6628 8 8 3.3228 -2.6044 -1.3537 9 7 2.7673 -1.7977 0.6750 10 6 3.4589 -2.8080 1.4794 11 7 2.5475 -3.9286 1.7473 12 6 1.5910 -4.1037 0.6470 13 6 0.5698 -5.1796 1.0233 14 6 1.3014 -6.4953 1.3028 15 6 2.3254 -6.2737 2.4195 16 1 1.8097 -5.9806 3.3339 17 6 3.0912 -7.5490 2.6603 18 1 4.1630 -7.5683 2.5294 19 6 2.4234 -8.6914 3.0480 20 7 1.1181 -8.6681 3.2071 21 14 3.3727 -10.2721 3.3471 22 1 4.8180 -10.0355 3.1020 23 1 3.1747 -10.7100 4.7522 24 1 2.8801 -11.3273 2.4256 25 6 3.2957 -5.1661 2.0026 26 6 2.0637 -0.7706 1.1912 27 8 1.8891 -0.5189 2.3642 28 1 -0.3634 0.4791 0.9091 29 1 -0.3634 0.5479 -0.8695 30 1 -0.3633 -1.0269 -0.0397 31 1 3.1118 1.5412 0.2999 32 1 0.0798 2.2686 0.6400 33 1 1.5065 3.3983 0.9406 34 1 2.2311 3.1251 -1.4749 35 1 0.8043 1.9955 -1.7749 36 1 1.9084 -0.5386 -2.0941 37 1 4.3309 -3.1712 0.9354 38 1 3.7778 -2.3654 2.4230 39 1 1.0747 -3.1620 0.4612 40 1 2.1248 -4.4087 -0.2531 41 1 -0.1306 -5.3204 0.2001 42 1 0.0255 -4.8693 1.9152 43 1 1.8136 -6.8264 0.3994 44 1 0.5821 -7.2532 1.6133 45 1 0.6483 -9.4718 3.4794 46 1 3.8216 -5.4661 1.0962 47 1 4.0173 -4.9959 2.8017 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000853525651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:05 Heat of formation + Delta-G solvation = -1.079068 kcal Electronic energy + Delta-G solvation = -28758.850529 eV Core-core repulsion = 24943.720717 eV Total energy + Delta-G solvation = -3815.129812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.78708 -38.99993 -38.41494 -37.75001 -35.91503 -34.75345 -32.97633 -31.38528 -30.42706 -29.80047 -26.69956 -25.66854 -24.90821 -23.27679 -22.93133 -22.30835 -21.65020 -20.48796 -20.07655 -18.62025 -17.98414 -17.28766 -16.90773 -16.39367 -15.87306 -15.68992 -15.55499 -15.14408 -14.52945 -14.40998 -14.07095 -13.87901 -13.66372 -13.51683 -13.11391 -13.03965 -12.68417 -12.45878 -12.23782 -12.07040 -11.94748 -11.72602 -11.58442 -11.29474 -10.97951 -10.94454 -10.70472 -10.68172 -10.57953 -10.25357 -10.11761 -9.90772 -9.80964 -9.66476 -9.45219 -9.06330 -8.69261 -8.28378 -7.73219 -5.95305 -4.01220 1.55401 2.07966 2.85365 2.93724 3.25138 3.32360 3.40296 3.44244 3.83173 4.03034 4.24401 4.37871 4.43132 4.53805 4.57725 4.81414 4.97533 5.07630 5.23009 5.26460 5.34966 5.36150 5.39766 5.47132 5.53249 5.61369 5.63888 5.68303 5.74337 5.87455 6.06813 6.24278 6.38002 6.48076 6.60378 6.70561 6.75226 6.91633 6.99568 7.20064 7.31454 7.34861 7.59377 7.68253 7.79045 8.04195 8.09492 8.18583 8.49099 9.02658 9.62950 11.10921 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.030322 B = 0.003028 C = 0.003004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.199175 B = 9243.867644 C = 9317.390648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.152 3.848 3 C -0.158 4.158 4 C -0.162 4.162 5 C -0.167 4.167 6 N -0.720 5.720 7 C 0.703 3.297 8 O -0.537 6.537 9 N -0.576 5.576 10 C 0.287 3.713 11 N -0.545 5.545 12 C 0.062 3.938 13 C -0.115 4.115 14 C -0.110 4.110 15 C 0.057 3.943 16 H 0.036 0.964 17 C -0.513 4.513 18 H 0.055 0.945 19 C 0.063 3.937 20 N -0.888 5.888 21 Si 0.891 3.109 22 H -0.274 1.274 23 H -0.284 1.284 24 H -0.285 1.285 25 C 0.069 3.931 26 C 0.537 3.463 27 O -0.450 6.450 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.437 0.563 37 H 0.068 0.932 38 H 0.106 0.894 39 H 0.044 0.956 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.060 0.940 43 H 0.031 0.969 44 H 0.092 0.908 45 H 0.259 0.741 46 H 0.027 0.973 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.619 23.155 -9.119 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.061 3.939 3 C -0.178 4.178 4 C -0.200 4.200 5 C -0.204 4.204 6 N -0.384 5.384 7 C 0.404 3.596 8 O -0.409 6.409 9 N -0.323 5.323 10 C 0.077 3.923 11 N -0.273 5.273 12 C -0.066 4.066 13 C -0.153 4.153 14 C -0.148 4.148 15 C 0.038 3.962 16 H 0.054 0.946 17 C -0.552 4.552 18 H 0.073 0.927 19 C -0.139 4.139 20 N -0.527 5.527 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.058 4.058 26 C 0.322 3.678 27 O -0.317 6.317 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.281 0.719 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.078 0.922 43 H 0.050 0.950 44 H 0.110 0.890 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.742 22.753 -8.277 24.275 hybrid contribution 0.931 -1.011 -1.025 1.714 sum -0.811 21.742 -9.302 23.663 Atomic orbital electron populations 1.22118 0.90342 1.04293 1.04271 1.20844 0.96687 0.91639 0.84742 1.22202 1.00058 0.88313 1.07179 1.23149 1.00025 0.99161 0.97649 1.22993 1.03565 1.01518 0.92292 1.45617 1.55409 1.28524 1.08839 1.15882 0.79698 0.82109 0.81901 1.91042 1.48152 1.40868 1.60858 1.46549 1.50082 1.27951 1.07729 1.22444 0.91398 0.84463 0.94041 1.62512 1.17440 1.05827 1.41520 1.22036 0.94512 0.97960 0.92068 1.21660 0.96812 0.96820 0.99976 1.21655 0.99958 0.94910 0.98285 1.18655 0.92033 0.90777 0.94727 0.94593 1.21163 0.93708 0.94574 1.45760 0.92685 1.24936 0.94857 0.98767 0.95308 1.69903 1.06945 1.28392 1.47444 0.86557 0.80201 0.83601 0.77745 1.19834 1.21062 1.21125 1.22380 0.96703 0.87840 0.98860 1.20540 0.77277 0.80307 0.89703 1.90801 1.55463 1.69010 1.16391 0.89383 0.90272 0.90809 0.86915 0.87519 0.88033 0.88143 0.88286 0.71932 0.91430 0.87651 0.93745 0.94503 0.93592 0.92170 0.95019 0.89000 0.93120 0.95520 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 7.67 37.16 0.28 -0.86 16 2 C 0.15 1.39 1.19 -132.10 -0.16 1.23 16 3 C -0.16 -1.14 5.40 -90.62 -0.49 -1.63 16 4 C -0.16 -0.91 9.73 -26.73 -0.26 -1.17 16 5 C -0.17 -0.80 9.88 -26.73 -0.26 -1.06 16 6 N -0.72 -6.93 5.90 -52.94 -0.31 -7.24 16 7 C 0.70 9.94 6.87 -88.02 -0.61 9.33 16 8 O -0.54 -9.49 16.41 5.33 0.09 -9.40 16 9 N -0.58 -8.38 1.62 -124.03 -0.20 -8.58 16 10 C 0.29 4.68 6.17 -63.31 -0.39 4.29 16 11 N -0.55 -10.62 4.91 -238.58 -1.17 -11.79 16 12 C 0.06 1.20 4.25 -3.84 -0.02 1.18 16 13 C -0.11 -2.37 6.09 -26.66 -0.16 -2.54 16 14 C -0.11 -2.68 5.03 -26.61 -0.13 -2.82 16 15 C 0.06 1.45 2.26 -91.69 -0.21 1.24 16 16 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 17 C -0.51 -14.19 8.56 -34.44 -0.29 -14.49 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.75 5.31 -17.82 -0.09 1.65 16 20 N -0.89 -25.56 11.36 55.43 0.63 -24.93 16 21 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 22 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 C 0.07 1.50 4.52 -3.84 -0.02 1.48 16 26 C 0.54 7.15 6.69 -10.55 -0.07 7.08 16 27 O -0.45 -7.11 17.76 5.60 0.10 -7.01 16 28 H 0.09 0.64 6.88 -51.93 -0.36 0.28 16 29 H 0.08 0.39 6.87 -51.93 -0.36 0.04 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.11 0.55 6.05 -51.93 -0.31 0.23 16 33 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.10 0.38 7.16 -51.93 -0.37 0.01 16 36 H 0.44 3.09 8.96 -40.82 -0.37 2.72 16 37 H 0.07 1.10 7.58 -51.93 -0.39 0.71 16 38 H 0.11 1.60 8.00 -51.93 -0.42 1.18 16 39 H 0.04 0.78 6.05 -51.93 -0.31 0.47 16 40 H 0.04 0.76 7.09 -51.93 -0.37 0.40 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.09 2.48 6.16 -51.93 -0.32 2.16 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 1.33 8.12 -51.93 -0.42 0.91 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -32.29 366.70 -10.59 -42.88 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -7.34 Total: 1.18 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.88 Total: 2.92 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -1.05 Total: -52.55 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.19 Total: -16.42 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.29 -10.59 -42.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000853525651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.802 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds