Wall clock time and date at job start Tue Mar 31 2020 13:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.47150 * 2 1 4 4 N 1.46508 * 109.54129 * 305.29715 * 3 2 1 5 5 C 1.34777 * 119.99640 * 303.68664 * 4 3 2 6 6 O 1.21599 * 120.00382 * 354.65584 * 5 4 3 7 7 C 1.47429 * 119.99543 * 174.64941 * 5 4 3 8 8 C 1.41294 * 126.41728 * 0.02708 * 7 5 4 9 9 N 1.30444 * 108.02520 * 179.97438 * 8 7 5 10 10 N 1.39938 * 108.89529 * 0.02562 * 9 8 7 11 11 C 1.46501 * 125.75127 * 179.97438 * 10 9 8 12 12 C 1.50696 * 109.47139 * 90.02229 * 11 10 9 13 13 H 1.07998 * 120.00297 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00033 * 179.71842 * 12 11 10 15 15 N 1.31514 * 119.99712 * 0.28058 * 14 12 11 16 16 Si 1.86796 * 120.00177 * 180.27321 * 14 12 11 17 17 H 1.48502 * 109.46735 * 60.00687 * 16 14 12 18 18 H 1.48498 * 109.47185 * 180.02562 * 16 14 12 19 19 H 1.48499 * 109.47126 * 300.00470 * 16 14 12 20 20 C 1.34259 * 108.49223 * 0.22679 * 10 9 8 21 21 C 1.50705 * 126.29054 * 179.75114 * 20 10 9 22 22 C 1.53179 * 109.54157 * 65.47178 * 3 2 1 23 23 C 1.53280 * 109.06511 * 176.85644 * 22 3 2 24 24 O 1.42903 * 109.45744 * 302.44405 * 23 22 3 25 25 C 1.42913 * 114.09886 * 61.15795 * 24 23 22 26 26 C 1.53086 * 109.41205 * 298.84391 * 25 24 23 27 27 H 1.09001 * 109.47246 * 174.92436 * 1 2 3 28 28 H 1.08996 * 109.47395 * 294.92446 * 1 2 3 29 29 H 1.09001 * 109.47404 * 54.92900 * 1 2 3 30 30 H 1.08996 * 109.47268 * 240.00157 * 2 1 3 31 31 H 1.08995 * 109.47046 * 119.99700 * 2 1 3 32 32 H 0.96994 * 119.99577 * 123.69069 * 4 3 2 33 33 H 1.08008 * 125.98402 * 359.97438 * 8 7 5 34 34 H 1.08999 * 109.47256 * 330.02245 * 11 10 9 35 35 H 1.09001 * 109.46642 * 210.02387 * 11 10 9 36 36 H 0.97003 * 120.00121 * 179.97438 * 15 14 12 37 37 H 1.09001 * 109.46812 * 90.00202 * 21 20 10 38 38 H 1.09000 * 109.46943 * 209.99672 * 21 20 10 39 39 H 1.08991 * 109.46832 * 329.99850 * 21 20 10 40 40 H 1.09007 * 109.52387 * 296.84337 * 22 3 2 41 41 H 1.09000 * 109.52526 * 57.02948 * 22 3 2 42 42 H 1.08997 * 109.46113 * 182.45138 * 23 22 3 43 43 H 1.09006 * 109.46879 * 62.44200 * 23 22 3 44 44 H 1.08997 * 109.47627 * 178.85882 * 25 24 23 45 45 H 1.09001 * 109.48565 * 58.82648 * 25 24 23 46 46 H 1.09002 * 109.52398 * 297.70160 * 26 25 24 47 47 H 1.08998 * 109.57148 * 177.54546 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 1.4512 2.1705 -1.1269 5 6 1.6064 1.7075 -2.3831 6 8 2.3151 0.7417 -2.5920 7 6 0.9169 2.3721 -3.5040 8 6 0.0668 3.4974 -3.4171 9 7 -0.3460 3.7852 -4.6206 10 7 0.2114 2.8711 -5.5216 11 6 -0.0078 2.8548 -6.9700 12 6 1.0354 3.7070 -7.6456 13 1 1.7869 4.2100 -7.0553 14 6 1.0344 3.8393 -9.0181 15 7 0.1196 3.2263 -9.7371 16 14 2.3321 4.8894 -9.8561 17 1 3.6806 4.3485 -9.5490 18 1 2.1128 4.8690 -11.3247 19 1 2.2343 6.2860 -9.3609 20 6 0.9766 2.0082 -4.8342 21 6 1.7595 0.8562 -5.4096 22 6 1.6458 2.1254 1.3133 23 6 2.2289 3.5428 1.3353 24 8 3.6479 3.4762 1.1804 25 6 4.0736 2.8887 -0.0509 26 6 3.5663 1.4465 -0.1287 27 1 -0.3634 -1.0236 -0.0909 28 1 -0.3634 0.4331 0.9319 29 1 -0.3634 0.5905 -0.8411 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.9498 2.9856 -0.9688 33 1 -0.1952 4.0264 -2.5127 34 1 -0.9991 3.2500 -7.1919 35 1 0.0657 1.8311 -7.3371 36 1 0.1186 3.3197 -10.7026 37 1 2.7601 1.1950 -5.6781 38 1 1.8321 0.0602 -4.6686 39 1 1.2525 0.4803 -6.2982 40 1 0.5593 2.1750 1.3862 41 1 2.0425 1.5555 2.1535 42 1 1.9890 4.0193 2.2858 43 1 1.8010 4.1244 0.5187 44 1 5.1625 2.8943 -0.0990 45 1 3.6698 3.4616 -0.8858 46 1 4.0017 0.8629 0.6824 47 1 3.8523 1.0100 -1.0857 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889753022.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:01:41 Heat of formation + Delta-G solvation = -44.821433 kcal Electronic energy + Delta-G solvation = -28347.515506 eV Core-core repulsion = 24530.488882 eV Total energy + Delta-G solvation = -3817.026624 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.37896 -41.43166 -39.23112 -36.79096 -35.82264 -34.05679 -33.24964 -32.59867 -32.09720 -31.53158 -29.12608 -28.16507 -26.25223 -25.36927 -24.62400 -23.60912 -22.55343 -21.67104 -20.52192 -19.97766 -18.86573 -18.54000 -17.34340 -16.93659 -16.85869 -16.45615 -16.44411 -16.17355 -15.80618 -15.49858 -15.36296 -14.97944 -14.71005 -14.44357 -14.15170 -14.05763 -13.92450 -13.68736 -13.59049 -13.38249 -13.21442 -13.08346 -12.96628 -12.74692 -12.69957 -12.35251 -12.30811 -12.18782 -11.99627 -11.88448 -11.72439 -11.40800 -11.22517 -10.77015 -10.59221 -10.38863 -10.25499 -9.89852 -9.40608 -8.38798 -6.55384 0.71882 1.34247 1.37888 1.38937 1.46877 1.66474 2.30891 2.38842 2.60866 2.93384 3.00174 3.60478 3.75114 3.79337 3.84564 3.88855 4.07720 4.16033 4.24325 4.31443 4.41721 4.45741 4.51744 4.57620 4.62869 4.64991 4.72029 4.78996 4.84945 4.88492 4.94542 5.00498 5.06005 5.09438 5.15500 5.19165 5.20283 5.24294 5.33628 5.47258 5.48484 5.67483 5.73957 5.76470 6.05457 6.29162 6.53618 6.71298 6.86959 7.15766 7.46184 8.68897 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019457 B = 0.003181 C = 0.003032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.758894 B = 8799.177612 C = 9233.763644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 C 0.182 3.818 4 N -0.709 5.709 5 C 0.611 3.389 6 O -0.569 6.569 7 C -0.329 4.329 8 C 0.076 3.924 9 N -0.337 5.337 10 N -0.339 5.339 11 C 0.268 3.732 12 C -0.556 4.556 13 H 0.051 0.949 14 C 0.024 3.976 15 N -0.917 5.917 16 Si 0.970 3.030 17 H -0.267 1.267 18 H -0.273 1.273 19 H -0.273 1.273 20 C 0.143 3.857 21 C -0.084 4.084 22 C -0.149 4.149 23 C 0.051 3.949 24 O -0.398 6.398 25 C 0.066 3.934 26 C -0.162 4.162 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.041 0.959 30 H 0.057 0.943 31 H 0.081 0.919 32 H 0.406 0.594 33 H 0.223 0.777 34 H 0.030 0.970 35 H 0.049 0.951 36 H 0.275 0.725 37 H 0.080 0.920 38 H 0.103 0.897 39 H 0.067 0.933 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.054 0.946 44 H 0.094 0.906 45 H 0.040 0.960 46 H 0.084 0.916 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.811 -3.506 23.341 23.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.169 4.169 3 C 0.097 3.903 4 N -0.361 5.361 5 C 0.400 3.600 6 O -0.450 6.450 7 C -0.345 4.345 8 C -0.110 4.110 9 N -0.157 5.157 10 N -0.116 5.116 11 C 0.149 3.851 12 C -0.595 4.595 13 H 0.070 0.930 14 C -0.177 4.177 15 N -0.555 5.555 16 Si 0.794 3.206 17 H -0.192 1.192 18 H -0.197 1.197 19 H -0.198 1.198 20 C 0.007 3.993 21 C -0.142 4.142 22 C -0.186 4.186 23 C -0.025 4.025 24 O -0.317 6.317 25 C -0.011 4.011 26 C -0.200 4.200 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.060 0.940 30 H 0.076 0.924 31 H 0.100 0.900 32 H 0.243 0.757 33 H 0.239 0.761 34 H 0.048 0.952 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.122 0.878 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.072 0.928 44 H 0.113 0.887 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 2.573 -3.352 22.280 22.677 hybrid contribution 0.427 0.241 -0.859 0.989 sum 3.001 -3.111 21.421 21.852 Atomic orbital electron populations 1.21705 0.95026 1.01406 1.02048 1.21860 0.96765 0.95439 1.02810 1.20381 0.91928 0.92312 0.85696 1.45722 1.56625 1.29027 1.04727 1.16974 0.78987 0.81999 0.82009 1.90630 1.40492 1.29050 1.84803 1.20049 1.15152 1.06350 0.92899 1.24461 0.94975 0.95068 0.96529 1.77090 1.23392 1.15071 1.00106 1.49083 1.33613 1.20194 1.08691 1.19333 0.97669 0.98414 0.69648 1.21361 1.14109 1.31497 0.92485 0.93032 1.25725 0.98113 0.96571 0.97298 1.69988 1.34988 1.43138 1.07356 0.85415 0.78928 0.78814 0.77435 1.19164 1.19724 1.19806 1.21962 0.92306 0.93107 0.91875 1.20524 0.98512 0.93881 1.01307 1.22521 1.03291 0.97049 0.95762 1.22846 0.80444 0.96019 1.03209 1.87908 1.23204 1.81685 1.38869 1.22483 1.00052 0.92498 0.86040 1.22542 0.95868 0.97928 1.03705 0.93232 0.90799 0.94001 0.92402 0.89999 0.75721 0.76082 0.95180 0.93303 0.91636 0.90131 0.87846 0.91384 0.88008 0.88584 0.86707 0.92779 0.88749 0.94187 0.89772 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.41 71.98 0.68 -1.82 16 2 C -0.13 -2.46 4.63 30.60 0.14 -2.32 16 3 C 0.18 3.21 0.35 3.72 0.00 3.22 16 4 N -0.71 -14.41 3.30 -425.60 -1.41 -15.82 16 5 C 0.61 17.87 6.80 86.66 0.59 18.46 16 6 O -0.57 -19.19 11.14 -4.03 -0.04 -19.24 16 7 C -0.33 -11.26 6.13 -20.15 -0.12 -11.39 16 8 C 0.08 2.46 11.51 85.65 0.99 3.45 16 9 N -0.34 -14.30 12.50 -56.27 -0.70 -15.00 16 10 N -0.34 -15.52 3.56 -336.70 -1.20 -16.72 16 11 C 0.27 13.87 5.97 85.63 0.51 14.38 16 12 C -0.56 -30.71 9.39 25.60 0.24 -30.47 16 13 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 14 C 0.02 1.32 5.46 84.66 0.46 1.78 16 15 N -0.92 -51.39 13.29 21.45 0.28 -51.10 16 16 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 17 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 20 C 0.14 5.78 7.01 42.14 0.30 6.07 16 21 C -0.08 -3.06 9.56 71.24 0.68 -2.38 16 22 C -0.15 -1.71 4.68 30.75 0.14 -1.57 16 23 C 0.05 0.66 6.67 72.08 0.48 1.14 16 24 O -0.40 -7.74 10.77 -148.98 -1.60 -9.34 16 25 C 0.07 1.34 6.68 72.01 0.48 1.82 16 26 C -0.16 -3.29 4.81 30.68 0.15 -3.15 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.92 6.91 -2.39 -0.02 0.90 16 29 H 0.04 0.87 6.96 -2.39 -0.02 0.85 16 30 H 0.06 1.48 6.27 -2.39 -0.01 1.47 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.41 6.41 6.39 -92.71 -0.59 5.82 16 33 H 0.22 4.54 7.51 -2.91 -0.02 4.52 16 34 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.05 2.54 7.01 -2.39 -0.02 2.52 16 36 H 0.27 14.40 8.31 -92.71 -0.77 13.63 16 37 H 0.08 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.10 3.51 6.52 -2.39 -0.02 3.49 16 39 H 0.07 2.48 7.05 -2.39 -0.02 2.46 16 40 H 0.10 0.83 6.87 -2.38 -0.02 0.81 16 41 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.05 0.66 7.02 -2.38 -0.02 0.65 16 44 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.04 0.91 7.75 -2.39 -0.02 0.89 16 46 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.07 1.90 6.22 -2.39 -0.01 1.88 16 Total: -1.00 -66.65 368.18 3.46 -63.19 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: 0.39 Total: 22.12 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 5.71 Total: -2.76 kcal Atomic # 7 Polarization: -95.62 SS G_CDS: -3.02 Total: -98.64 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -1.65 Total: -28.58 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Total: -66.65 3.46 -63.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889753022.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.366 kcal (2) G-P(sol) polarization free energy of solvation -66.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds