Wall clock time and date at job start Tue Mar 31 2020 13:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50705 * 109.47097 * 2 1 4 4 N 1.29928 * 125.37875 * 89.99997 * 3 2 1 5 5 C 1.36069 * 108.47710 * 179.97438 * 4 3 2 6 6 C 1.47421 * 126.44708 * 179.97438 * 5 4 3 7 7 O 1.21608 * 119.99798 * 180.02562 * 6 5 4 8 8 N 1.34770 * 120.00302 * 0.02562 * 6 5 4 9 9 C 1.46502 * 120.00397 * 179.97438 * 8 6 5 10 10 H 1.09009 * 109.45763 * 35.00009 * 9 8 6 11 11 C 1.53036 * 109.46259 * 275.03129 * 9 8 6 12 12 C 1.53169 * 109.32329 * 301.35390 * 11 9 8 13 13 N 1.46918 * 108.76996 * 305.35542 * 12 11 9 14 14 C 1.36944 * 120.63261 * 233.63396 * 13 12 11 15 15 H 1.07997 * 119.99780 * 151.81053 * 14 13 12 16 16 C 1.38805 * 119.99717 * 331.80796 * 14 13 12 17 17 N 1.31626 * 120.00220 * 343.08185 * 16 14 13 18 18 Si 1.86798 * 120.00064 * 163.08093 * 16 14 13 19 19 H 1.48500 * 109.47139 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.47186 * 119.99938 * 18 16 14 21 21 H 1.48498 * 109.47442 * 239.99953 * 18 16 14 22 22 C 1.46931 * 118.73841 * 53.60671 * 13 12 11 23 23 C 1.53039 * 109.46195 * 154.97092 * 9 8 6 24 24 H 1.09003 * 109.49531 * 178.60770 * 23 9 8 25 25 C 1.53000 * 109.49693 * 298.67318 * 23 9 8 26 26 C 1.36083 * 107.10159 * 0.02562 * 5 4 3 27 27 C 1.50702 * 126.52597 * 180.02562 * 26 5 4 28 28 O 1.34051 * 125.37639 * 269.69503 * 3 2 1 29 29 H 1.08997 * 109.47307 * 59.99958 * 1 2 3 30 30 H 1.09004 * 109.47160 * 300.00085 * 1 2 3 31 31 H 1.09002 * 109.47283 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47409 * 119.99899 * 2 1 3 33 33 H 1.08996 * 109.47070 * 240.00164 * 2 1 3 34 34 H 0.97007 * 120.00201 * 0.02562 * 8 6 5 35 35 H 1.09002 * 109.50035 * 61.28745 * 11 9 8 36 36 H 1.08996 * 109.49888 * 181.39044 * 11 9 8 37 37 H 1.09001 * 109.58806 * 185.56953 * 12 11 9 38 38 H 1.08998 * 109.59102 * 65.14309 * 12 11 9 39 39 H 0.96998 * 120.00095 * 180.02562 * 17 16 14 40 40 H 1.09006 * 109.58447 * 186.60039 * 22 13 12 41 41 H 1.08997 * 109.58218 * 66.18342 * 22 13 12 42 42 H 1.09000 * 109.47207 * 60.00181 * 25 23 9 43 43 H 1.09008 * 109.46855 * 179.97438 * 25 23 9 44 44 H 1.08993 * 109.47258 * 299.99892 * 25 23 9 45 45 H 1.08994 * 109.47267 * 89.99537 * 27 26 5 46 46 H 1.08997 * 109.47314 * 210.00086 * 27 26 5 47 47 H 1.09000 * 109.47167 * 329.99606 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2831 2.1301 1.0594 5 6 2.7176 3.3574 0.6638 6 6 3.1115 4.4726 1.5438 7 8 3.4838 5.5252 1.0618 8 7 3.0591 4.3256 2.8824 9 6 3.4511 5.4337 3.7570 10 1 3.1604 6.3788 3.2981 11 6 4.9677 5.4108 3.9602 12 6 5.3768 4.0681 4.5732 13 7 4.6003 3.8531 5.8017 14 6 5.2300 3.5745 6.9854 15 1 4.7698 3.8558 7.9211 16 6 6.4597 2.9307 6.9826 17 7 6.8677 2.2958 5.9042 18 14 7.5356 2.9652 8.5092 19 1 6.8538 3.7387 9.5779 20 1 7.7733 1.5765 8.9788 21 1 8.8348 3.6072 8.1849 22 6 3.1352 3.9431 5.7363 23 6 2.7513 5.2874 5.1101 24 1 3.0617 6.0978 5.7697 25 6 1.2355 5.3440 4.9099 26 6 2.7189 3.3619 -0.6971 27 6 3.1246 4.5063 -1.5898 28 8 2.2965 2.1506 -1.0930 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 2.7625 3.4858 3.2670 35 1 5.4656 5.5383 2.9990 36 1 5.2571 6.2201 4.6306 37 1 6.4404 4.0839 4.8112 38 1 5.1706 3.2653 3.8654 39 1 7.7269 1.8455 5.9024 40 1 2.7198 3.8764 6.7419 41 1 2.7462 3.1301 5.1234 42 1 0.9255 4.5327 4.2512 43 1 0.7375 5.2393 5.8739 44 1 0.9636 6.2997 4.4620 45 1 4.1909 4.4388 -1.8051 46 1 2.5618 4.4571 -2.5219 47 1 2.9143 5.4508 -1.0879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000943519037.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:02 Heat of formation + Delta-G solvation = -8.643817 kcal Electronic energy + Delta-G solvation = -28333.470444 eV Core-core repulsion = 24518.012599 eV Total energy + Delta-G solvation = -3815.457845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.45466 -39.70367 -37.58960 -35.11454 -34.21860 -34.15990 -32.44070 -31.67705 -31.08050 -29.99827 -27.27747 -25.84845 -25.32956 -24.45624 -23.03171 -22.01635 -21.26426 -21.03908 -20.15786 -18.46871 -17.91407 -17.01004 -16.67636 -15.87856 -15.33631 -14.95408 -14.80273 -14.69637 -14.44699 -14.05018 -13.79798 -13.67977 -13.46396 -13.27020 -13.19997 -12.88461 -12.75613 -12.53546 -12.49247 -12.07061 -11.99585 -11.47749 -11.44913 -11.32684 -11.20299 -11.04642 -10.79500 -10.71403 -10.68260 -10.30364 -10.16872 -10.00911 -9.78051 -9.69480 -9.38348 -8.84520 -8.49159 -8.42067 -6.63710 -5.76174 -3.19477 1.11662 2.06408 2.41410 3.38362 3.41236 3.46390 3.48400 3.55296 3.85902 4.50887 4.54086 4.78691 4.85110 4.88147 5.07862 5.16449 5.22948 5.35558 5.37672 5.40937 5.41777 5.50119 5.54090 5.64471 5.65619 5.81356 5.85265 5.91127 5.96862 6.03017 6.12438 6.13613 6.21199 6.33485 6.41515 6.50006 6.66834 6.70460 6.81518 6.96356 7.02774 7.41389 7.47727 7.71538 7.82132 7.95011 8.47006 8.50504 9.23269 9.86697 10.43373 11.31814 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.013647 B = 0.003675 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.291676 B = 7618.049970 C = 8146.127729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.026 4.026 3 C 0.191 3.809 4 N -0.451 5.451 5 C -0.068 4.068 6 C 0.600 3.400 7 O -0.546 6.546 8 N -0.690 5.690 9 C 0.159 3.841 10 H 0.074 0.926 11 C -0.154 4.154 12 C 0.174 3.826 13 N -0.591 5.591 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.901 5.901 18 Si 0.901 3.099 19 H -0.278 1.278 20 H -0.291 1.291 21 H -0.289 1.289 22 C 0.151 3.849 23 C -0.119 4.119 24 H 0.082 0.918 25 C -0.142 4.142 26 C 0.031 3.969 27 C -0.073 4.073 28 O -0.200 6.200 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.110 0.890 33 H 0.093 0.907 34 H 0.410 0.590 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.085 0.915 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.057 0.943 41 H 0.015 0.985 42 H 0.051 0.949 43 H 0.054 0.946 44 H 0.048 0.952 45 H 0.090 0.910 46 H 0.076 0.924 47 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.523 -0.224 -14.069 18.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.064 4.064 3 C -0.018 4.018 4 N -0.180 5.180 5 C -0.188 4.188 6 C 0.385 3.615 7 O -0.426 6.426 8 N -0.340 5.340 9 C 0.056 3.944 10 H 0.092 0.908 11 C -0.194 4.194 12 C 0.048 3.952 13 N -0.313 5.313 14 C -0.382 4.382 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.203 1.203 20 H -0.218 1.218 21 H -0.216 1.216 22 C 0.024 3.976 23 C -0.139 4.139 24 H 0.101 0.899 25 C -0.200 4.200 26 C -0.025 4.025 27 C -0.129 4.129 28 O -0.087 6.087 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.111 0.889 34 H 0.247 0.753 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.103 0.897 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.033 0.967 42 H 0.070 0.930 43 H 0.073 0.927 44 H 0.067 0.933 45 H 0.109 0.891 46 H 0.095 0.905 47 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.167 0.208 -13.755 18.365 hybrid contribution 0.680 -0.355 0.259 0.809 sum -11.487 -0.147 -13.497 17.724 Atomic orbital electron populations 1.21786 0.93076 1.02976 1.02956 1.20101 0.96823 0.83982 1.05466 1.26208 1.00402 0.96953 0.78263 1.70776 1.14881 1.02516 1.29814 1.21615 1.10380 0.94497 0.92289 1.16664 0.77691 0.84926 0.82175 1.90732 1.49010 1.27443 1.75379 1.45931 1.65158 1.18152 1.04776 1.20962 0.95513 0.88746 0.89226 0.90761 1.22568 0.94164 1.02334 1.00349 1.20713 0.97896 0.90109 0.86438 1.44065 0.99004 1.81649 1.06614 1.19215 1.02288 1.31438 0.85289 0.91643 1.25043 1.00214 0.97174 0.97114 1.70057 1.20973 1.35156 1.28314 0.86249 0.80658 0.77256 0.82751 1.20253 1.21785 1.21607 1.20917 0.86543 0.92053 0.98084 1.21945 0.94094 1.02026 0.95867 0.89929 1.21768 0.95898 1.01113 1.01212 1.23686 0.98647 0.85588 0.94594 1.20557 1.02403 0.92540 0.97426 1.84293 1.64119 1.22250 1.38045 0.92299 0.91587 0.90848 0.87220 0.88872 0.75288 0.92698 0.91683 0.89654 0.96342 0.93747 0.92493 0.96680 0.93013 0.92724 0.93318 0.89137 0.90486 0.86933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.89 37.16 0.37 -0.71 16 2 C -0.03 -0.22 6.56 -27.88 -0.18 -0.40 16 3 C 0.19 2.48 7.56 -13.08 -0.10 2.38 16 4 N -0.45 -7.18 11.06 -7.66 -0.08 -7.27 16 5 C -0.07 -1.11 6.99 -83.02 -0.58 -1.69 16 6 C 0.60 10.79 7.78 -12.52 -0.10 10.69 16 7 O -0.55 -10.38 14.46 5.27 0.08 -10.30 16 8 N -0.69 -12.36 3.59 -54.84 -0.20 -12.56 16 9 C 0.16 2.88 2.21 -67.89 -0.15 2.73 16 10 H 0.07 1.32 7.58 -51.92 -0.39 0.92 16 11 C -0.15 -3.15 5.77 -26.63 -0.15 -3.30 16 12 C 0.17 4.26 5.05 -3.73 -0.02 4.24 16 13 N -0.59 -14.70 2.99 -172.34 -0.52 -15.21 16 14 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 15 H 0.07 1.76 7.88 -52.49 -0.41 1.34 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.42 11.20 55.49 0.62 -25.80 16 18 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 C 0.15 3.09 5.50 -3.71 -0.02 3.07 16 23 C -0.12 -2.04 2.67 -90.50 -0.24 -2.28 16 24 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 25 C -0.14 -2.01 9.05 37.16 0.34 -1.68 16 26 C 0.03 0.44 7.44 -35.08 -0.26 0.17 16 27 C -0.07 -0.79 9.88 36.01 0.36 -0.43 16 28 O -0.20 -2.62 10.73 6.51 0.07 -2.55 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.11 0.92 8.14 -51.93 -0.42 0.49 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 7.55 6.46 -40.82 -0.26 7.29 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 38 H 0.02 0.48 7.74 -51.93 -0.40 0.08 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 41 H 0.02 0.32 6.64 -51.93 -0.34 -0.03 16 42 H 0.05 0.74 7.54 -51.93 -0.39 0.35 16 43 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.11 1.34 6.48 -51.93 -0.34 1.00 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -32.04 376.12 -7.85 -39.88 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -7.48 Total: 5.63 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.98 Total: 5.74 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.18 Total: -60.84 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.15 Total: -12.85 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.04 -7.85 -39.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000943519037.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.241 kcal (2) G-P(sol) polarization free energy of solvation -32.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds