Wall clock time and date at job start Tue Mar 31 2020 12:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50699 * 109.47500 * 2 1 4 4 O 1.33499 * 126.83138 * 270.01016 * 3 2 1 5 5 N 1.20650 * 113.15621 * 179.97438 * 4 3 2 6 6 C 1.30020 * 112.30409 * 359.73114 * 5 4 3 7 7 C 1.50699 * 127.33783 * 180.27809 * 6 5 4 8 8 C 1.37352 * 126.82959 * 90.00216 * 3 2 1 9 9 C 1.47405 * 128.56187 * 359.96686 * 8 3 2 10 10 O 1.21606 * 119.99675 * 90.00269 * 9 8 3 11 11 N 1.34770 * 120.00501 * 269.99516 * 9 8 3 12 12 C 1.46494 * 120.00365 * 179.97438 * 11 9 8 13 13 H 1.08992 * 109.46613 * 324.98200 * 12 11 9 14 14 C 1.53047 * 109.45571 * 84.93756 * 12 11 9 15 15 C 1.52760 * 109.38266 * 181.25915 * 14 12 11 16 16 N 1.46929 * 109.00960 * 305.59022 * 15 14 12 17 17 C 1.36938 * 120.63068 * 233.58060 * 16 15 14 18 18 H 1.07996 * 120.00094 * 152.30848 * 17 16 15 19 19 C 1.38813 * 119.99821 * 332.30991 * 17 16 15 20 20 N 1.31611 * 120.00201 * 342.49359 * 19 17 16 21 21 Si 1.86804 * 119.99923 * 162.76680 * 19 17 16 22 22 H 1.48497 * 109.46990 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47259 * 119.99842 * 21 19 17 24 24 H 1.48499 * 109.47133 * 240.00312 * 21 19 17 25 25 C 1.46929 * 118.73866 * 53.30862 * 16 15 14 26 26 C 1.53039 * 109.46176 * 205.00294 * 12 11 9 27 27 H 1.09000 * 109.52347 * 298.58295 * 26 12 11 28 28 C 1.52996 * 109.49629 * 58.66545 * 26 12 11 29 29 H 1.08998 * 109.47214 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46326 * 299.99801 * 1 2 3 31 31 H 1.08999 * 109.47812 * 59.99365 * 1 2 3 32 32 H 1.09004 * 109.46326 * 240.00199 * 2 1 3 33 33 H 1.08999 * 109.47812 * 120.00635 * 2 1 3 34 34 H 1.09002 * 109.46489 * 270.14501 * 7 6 5 35 35 H 1.08997 * 109.46983 * 30.13936 * 7 6 5 36 36 H 1.08994 * 109.47426 * 150.14640 * 7 6 5 37 37 H 0.97010 * 119.99743 * 0.02562 * 11 9 8 38 38 H 1.08994 * 109.49959 * 301.33825 * 14 12 11 39 39 H 1.09001 * 109.49807 * 61.40271 * 14 12 11 40 40 H 1.08999 * 109.51393 * 185.70211 * 15 14 12 41 41 H 1.09003 * 109.43370 * 65.42441 * 15 14 12 42 42 H 0.97008 * 119.99943 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58437 * 66.43102 * 25 16 15 44 44 H 1.08997 * 109.58308 * 186.71283 * 25 16 15 45 45 H 1.09005 * 109.47218 * 179.83670 * 28 26 12 46 46 H 1.08993 * 109.47324 * 299.83576 * 28 26 12 47 47 H 1.09004 * 109.47251 * 59.84253 * 28 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 2.2990 2.1753 -1.0685 5 7 2.6895 3.2807 -0.7833 6 6 2.7490 3.4666 0.5022 7 6 3.1819 4.7154 1.2260 8 6 2.3070 2.1970 1.0994 9 6 2.1824 1.8467 2.5258 10 8 3.1238 1.3507 3.1144 11 7 1.0254 2.0762 3.1776 12 6 0.9015 1.7276 4.5951 13 1 1.4734 0.8221 4.7977 14 6 1.4430 2.8746 5.4514 15 6 1.3419 2.4964 6.9280 16 7 -0.0453 2.1191 7.2315 17 6 -0.7231 2.7201 8.2584 18 1 -1.7994 2.8007 8.2209 19 6 -0.0267 3.2258 9.3475 20 7 1.2113 2.8406 9.5736 21 14 -0.8494 4.4474 10.4968 22 1 -2.2341 4.7111 10.0297 23 1 -0.8885 3.8854 11.8707 24 1 -0.0794 5.7171 10.5029 25 6 -0.6934 1.0889 6.4084 26 6 -0.5713 1.4869 4.9341 27 1 -1.1401 2.3994 4.7553 28 6 -1.1207 0.3621 4.0544 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 4.2570 4.6789 1.4023 35 1 2.9427 5.5885 0.6191 36 1 2.6594 4.7819 2.1802 37 1 0.2743 2.4717 2.7080 38 1 2.4853 3.0610 5.1929 39 1 0.8561 3.7745 5.2674 40 1 1.6317 3.3486 7.5428 41 1 2.0028 1.6541 7.1327 42 1 1.6980 3.1943 10.3345 43 1 -0.2019 0.1296 6.5698 44 1 -1.7456 1.0111 6.6822 45 1 -2.1689 0.1891 4.2982 46 1 -1.0337 0.6457 3.0056 47 1 -0.5509 -0.5499 4.2327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000944891045.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:58 Heat of formation + Delta-G solvation = 27.288920 kcal Electronic energy + Delta-G solvation = -28289.654285 eV Core-core repulsion = 24475.754601 eV Total energy + Delta-G solvation = -3813.899684 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -45.03412 -39.82352 -37.70017 -35.08896 -34.68743 -34.57639 -32.68357 -31.26112 -30.67056 -29.77338 -28.93210 -26.10313 -25.63769 -24.40309 -23.82281 -22.15890 -21.05358 -20.68327 -20.01997 -19.33540 -17.90928 -17.86824 -16.77605 -16.39554 -15.99247 -15.31736 -14.89392 -14.58210 -14.38947 -13.94713 -13.81999 -13.60376 -13.53804 -13.44110 -13.26713 -13.12462 -12.85741 -12.77419 -12.70104 -12.17457 -11.93717 -11.77857 -11.53864 -11.34709 -11.14425 -11.11896 -10.87197 -10.68757 -10.42089 -10.25022 -10.19016 -10.06731 -9.97920 -9.82423 -9.56994 -9.53762 -8.78904 -8.46158 -6.72397 -5.81372 -3.23997 1.12865 1.75260 2.43646 2.66574 3.30598 3.35977 3.43589 3.45354 3.95488 4.04672 4.46682 4.61500 4.62809 4.77652 4.90260 4.99376 5.09695 5.23901 5.25222 5.30324 5.36532 5.40511 5.43953 5.46778 5.51253 5.55776 5.61287 5.78218 5.83598 5.87213 5.93319 6.05511 6.19547 6.21435 6.29104 6.39628 6.54796 6.62662 6.73093 6.84947 6.91373 7.33291 7.56869 7.65071 7.77277 8.04698 8.23485 8.41482 9.17833 9.81312 10.37297 11.27163 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019584 B = 0.003285 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.368675 B = 8520.280292 C = 9316.799169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.048 4.048 3 C 0.017 3.983 4 O 0.095 5.905 5 N -0.359 5.359 6 C 0.055 3.945 7 C -0.079 4.079 8 C -0.244 4.244 9 C 0.595 3.405 10 O -0.524 6.524 11 N -0.708 5.708 12 C 0.157 3.843 13 H 0.084 0.916 14 C -0.148 4.148 15 C 0.173 3.827 16 N -0.592 5.592 17 C -0.255 4.255 18 H 0.066 0.934 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.901 3.099 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.155 3.845 26 C -0.115 4.115 27 H 0.071 0.929 28 C -0.142 4.142 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.396 0.604 38 H 0.054 0.946 39 H 0.055 0.945 40 H 0.090 0.910 41 H 0.021 0.979 42 H 0.254 0.746 43 H 0.021 0.979 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.046 0.954 47 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.569 -3.113 -20.147 20.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.086 4.086 3 C -0.047 4.047 4 O 0.034 5.966 5 N -0.065 5.065 6 C -0.107 4.107 7 C -0.136 4.136 8 C -0.251 4.251 9 C 0.378 3.622 10 O -0.400 6.400 11 N -0.358 5.358 12 C 0.054 3.946 13 H 0.102 0.898 14 C -0.188 4.188 15 C 0.047 3.953 16 N -0.314 5.314 17 C -0.385 4.385 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.731 3.269 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C 0.028 3.972 26 C -0.136 4.136 27 H 0.090 0.910 28 C -0.200 4.200 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.104 0.896 37 H 0.230 0.770 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.108 0.892 41 H 0.039 0.961 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.065 0.935 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.527 -2.683 -20.595 20.775 hybrid contribution -0.669 0.652 1.080 1.428 sum -1.195 -2.031 -19.515 19.656 Atomic orbital electron populations 1.21815 0.92803 1.03262 1.02941 1.20261 0.97111 0.85866 1.05338 1.24651 0.98585 0.96279 0.85150 1.84513 1.61640 1.17482 1.33007 1.73604 1.17628 0.98664 1.16637 1.24780 1.00335 0.96617 0.88969 1.20242 1.02669 0.91020 0.99693 1.22077 1.12285 0.95273 0.95503 1.16856 0.83278 0.78419 0.83606 1.90847 1.38230 1.43279 1.67605 1.46291 1.14018 1.63018 1.12483 1.21147 0.96932 0.99135 0.77419 0.89782 1.22518 0.99587 0.97318 0.99378 1.20673 0.85329 1.00035 0.89274 1.44094 1.11439 1.41562 1.34349 1.19207 0.91378 1.31685 0.96181 0.91579 1.25032 0.96817 1.00964 0.96704 1.70048 1.11154 1.43773 1.29423 0.86255 0.78864 0.81216 0.80609 1.20262 1.21709 1.21566 1.20885 0.97279 0.91584 0.87454 1.21975 0.94017 0.98776 0.98782 0.91016 1.21795 1.00832 0.98757 0.98656 0.90782 0.91843 0.91875 0.88739 0.88162 0.89536 0.89967 0.89560 0.77011 0.92710 0.92580 0.89188 0.96136 0.93616 0.96158 0.92340 0.92653 0.93503 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.89 37.16 0.37 -0.59 16 2 C -0.05 -0.36 6.38 -27.88 -0.18 -0.54 16 3 C 0.02 0.18 6.80 -34.63 -0.24 -0.05 16 4 O 0.10 1.11 11.06 18.64 0.21 1.32 16 5 N -0.36 -4.63 12.01 34.78 0.42 -4.21 16 6 C 0.06 0.69 7.59 -79.77 -0.61 0.09 16 7 C -0.08 -0.81 10.49 36.01 0.38 -0.43 16 8 C -0.24 -3.12 6.24 -102.89 -0.64 -3.77 16 9 C 0.60 8.77 7.57 -12.53 -0.09 8.68 16 10 O -0.52 -9.87 16.77 5.27 0.09 -9.78 16 11 N -0.71 -9.44 4.36 -54.85 -0.24 -9.68 16 12 C 0.16 2.55 1.88 -67.89 -0.13 2.42 16 13 H 0.08 1.55 7.58 -51.93 -0.39 1.16 16 14 C -0.15 -2.82 5.64 -26.83 -0.15 -2.97 16 15 C 0.17 4.09 5.28 -3.93 -0.02 4.07 16 16 N -0.59 -14.30 3.00 -172.58 -0.52 -14.81 16 17 C -0.26 -6.80 9.59 -15.06 -0.14 -6.94 16 18 H 0.07 1.73 7.88 -52.49 -0.41 1.31 16 19 C 0.00 0.10 4.91 -17.43 -0.09 0.01 16 20 N -0.90 -25.84 11.20 55.49 0.62 -25.22 16 21 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.16 3.04 5.80 -3.71 -0.02 3.02 16 26 C -0.11 -1.77 2.46 -90.50 -0.22 -1.99 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 C -0.14 -1.71 9.02 37.16 0.34 -1.37 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.45 7.48 -51.93 -0.39 0.07 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.10 0.84 8.11 -51.93 -0.42 0.42 16 34 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 4.38 8.29 -40.82 -0.34 4.04 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.09 2.39 6.04 -51.93 -0.31 2.07 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 1.12 7.93 -51.93 -0.41 0.71 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.47 6.70 -51.93 -0.35 0.12 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 383.01 15.07 5.77 5.77 Total: -1.00 -31.64 383.01 -7.79 -39.43 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.66 Total: 1.29 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -1.45 Total: -0.37 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: 0.28 Total: -53.93 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.29 Total: -8.46 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.64 -7.79 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000944891045.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.719 kcal (2) G-P(sol) polarization free energy of solvation -31.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds