Wall clock time and date at job start Tue Mar 31 2020 13:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50702 * 109.47098 * 2 1 4 4 N 1.30614 * 125.42219 * 90.02558 * 3 2 1 5 5 C 1.33689 * 108.99433 * 179.97438 * 4 3 2 6 6 C 1.50704 * 126.27719 * 179.97438 * 5 4 3 7 7 C 1.36343 * 107.45665 * 359.97438 * 5 4 3 8 8 C 1.46723 * 126.64916 * 179.97438 * 7 5 4 9 9 O 1.21687 * 119.99708 * 0.02562 * 8 7 5 10 10 N 1.34768 * 119.99974 * 179.97438 * 8 7 5 11 11 C 1.46509 * 119.99953 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.45669 * 34.97372 * 11 10 8 13 13 C 1.53034 * 109.45921 * 275.00171 * 11 10 8 14 14 C 1.53192 * 109.31037 * 178.61487 * 13 11 10 15 15 N 1.46921 * 108.77775 * 54.63589 * 14 13 11 16 16 C 1.36938 * 120.63183 * 126.41376 * 15 14 13 17 17 H 1.08001 * 119.99789 * 209.52381 * 16 15 14 18 18 C 1.38815 * 119.99873 * 29.53018 * 16 15 14 19 19 N 1.31612 * 120.00169 * 16.11971 * 18 16 15 20 20 Si 1.86799 * 119.99538 * 196.12794 * 18 16 15 21 21 H 1.48501 * 109.47488 * 94.01896 * 20 18 16 22 22 H 1.48502 * 109.46661 * 214.01954 * 20 18 16 23 23 H 1.48495 * 109.47274 * 334.01316 * 20 18 16 24 24 C 1.46930 * 118.73831 * 306.38898 * 15 14 13 25 25 H 1.08999 * 109.58644 * 293.82539 * 24 15 14 26 26 C 1.52995 * 109.58842 * 173.39896 * 24 15 14 27 27 C 1.53045 * 109.45776 * 154.93202 * 11 10 8 28 28 O 1.33666 * 125.42221 * 270.33470 * 3 2 1 29 29 H 1.08993 * 109.47264 * 60.00264 * 1 2 3 30 30 H 1.08999 * 109.46556 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47051 * 299.99794 * 1 2 3 32 32 H 1.09002 * 109.47051 * 240.00206 * 2 1 3 33 33 H 1.09000 * 109.47340 * 120.00127 * 2 1 3 34 34 H 1.08997 * 109.47363 * 270.04607 * 6 5 4 35 35 H 1.09002 * 109.46717 * 30.03882 * 6 5 4 36 36 H 1.08998 * 109.47389 * 150.03804 * 6 5 4 37 37 H 0.97001 * 120.00594 * 359.97438 * 10 8 7 38 38 H 1.09005 * 109.49792 * 298.56503 * 13 11 10 39 39 H 1.09001 * 109.50223 * 58.66312 * 13 11 10 40 40 H 1.09003 * 109.58693 * 174.42424 * 14 13 11 41 41 H 1.09001 * 109.58508 * 294.84508 * 14 13 11 42 42 H 0.97002 * 119.99761 * 180.02562 * 19 18 16 43 43 H 1.09010 * 109.46813 * 300.71154 * 26 24 15 44 44 H 1.08992 * 109.47241 * 60.71119 * 26 24 15 45 45 H 1.09000 * 109.47244 * 180.71718 * 26 24 15 46 46 H 1.09002 * 109.49688 * 301.33363 * 27 11 10 47 47 H 1.08995 * 109.49643 * 61.40545 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2851 2.1344 1.0644 5 6 2.7129 3.3433 0.6863 6 6 3.1126 4.4736 1.5994 7 6 2.7214 3.3662 -0.6769 8 6 3.1189 4.4907 -1.5315 9 8 3.4885 5.5356 -1.0291 10 7 3.0758 4.3660 -2.8727 11 6 3.4722 5.4890 -3.7259 12 1 4.2887 6.0342 -3.2525 13 6 2.2788 6.4269 -3.9214 14 6 2.7063 7.6175 -4.7853 15 7 3.2862 7.1101 -6.0363 16 6 2.8161 7.5405 -7.2483 17 1 2.8624 6.8883 -8.1079 18 6 2.2801 8.8150 -7.3720 19 7 2.5027 9.7159 -6.4387 20 14 1.2427 9.2512 -8.8629 21 1 -0.1927 9.0404 -8.5461 22 1 1.4665 10.6746 -9.2222 23 1 1.6297 8.3855 -10.0057 24 6 4.3805 6.1325 -5.9621 25 1 5.2610 6.6021 -5.5236 26 6 4.7120 5.6260 -7.3673 27 6 3.9342 4.9584 -5.0851 28 8 2.2846 2.1534 -1.0892 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 2.2401 5.0884 1.8200 35 1 3.5140 4.0663 2.5274 36 1 3.8729 5.0834 1.1115 37 1 2.7823 3.5327 -3.2731 38 1 1.4708 5.8890 -4.4174 39 1 1.9355 6.7860 -2.9512 40 1 1.8377 8.2366 -5.0100 41 1 3.4503 8.2083 -4.2509 42 1 2.1278 10.6064 -6.5250 43 1 3.8274 5.1628 -7.8046 44 1 5.0292 6.4627 -7.9896 45 1 5.5153 4.8916 -7.3087 46 1 4.7693 4.2724 -4.9430 47 1 3.1109 4.4339 -5.5698 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947898885.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:23 Heat of formation + Delta-G solvation = -29.669002 kcal Electronic energy + Delta-G solvation = -27582.883741 eV Core-core repulsion = 23766.514176 eV Total energy + Delta-G solvation = -3816.369565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -44.58705 -41.03898 -39.29090 -36.70486 -36.03496 -35.18817 -34.24484 -33.06743 -31.90484 -31.29178 -28.93814 -27.91054 -26.73727 -25.79751 -23.98781 -23.22701 -22.59488 -22.07654 -21.55412 -21.01567 -19.31633 -18.23685 -18.13363 -17.39347 -16.99117 -16.89620 -15.97432 -15.79141 -15.74146 -15.64359 -15.33212 -14.92088 -14.87015 -14.59253 -14.39444 -14.28870 -14.15209 -13.60916 -13.35170 -13.29554 -12.98210 -12.74828 -12.68081 -12.64253 -12.63428 -12.39165 -12.19057 -12.10525 -12.08295 -11.95975 -11.86775 -11.73214 -11.54673 -11.46200 -11.07561 -10.56573 -10.29192 -9.86791 -8.65178 -7.83995 -5.30240 -0.34901 1.21999 1.25043 1.47576 1.49067 1.57694 1.89972 2.02144 2.52812 2.78682 3.32155 3.53363 3.57304 3.62243 3.82418 4.01365 4.12749 4.17766 4.20432 4.23331 4.36302 4.38784 4.57654 4.59186 4.62441 4.67056 4.73382 4.75284 4.78213 4.93156 4.93707 4.96055 5.01499 5.03417 5.04533 5.13975 5.22410 5.32392 5.36462 5.39108 5.50724 5.55228 5.70020 5.73792 6.23648 6.43285 6.50069 6.92484 7.17237 7.88770 8.41696 9.23572 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.019279 B = 0.002776 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.980479 B =10082.481855 C =10354.812971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.030 4.030 3 C 0.232 3.768 4 N -0.509 5.509 5 C 0.075 3.925 6 C -0.079 4.079 7 C -0.138 4.138 8 C 0.606 3.394 9 O -0.544 6.544 10 N -0.698 5.698 11 C 0.162 3.838 12 H 0.067 0.933 13 C -0.132 4.132 14 C 0.185 3.815 15 N -0.603 5.603 16 C -0.249 4.249 17 H 0.080 0.920 18 C -0.056 4.056 19 N -0.940 5.940 20 Si 0.963 3.037 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.263 1.263 24 C 0.160 3.840 25 H 0.015 0.985 26 C -0.127 4.127 27 C -0.119 4.119 28 O -0.188 6.188 29 H 0.053 0.947 30 H 0.102 0.898 31 H 0.052 0.948 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.414 0.586 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.054 0.946 41 H -0.008 1.008 42 H 0.247 0.753 43 H 0.054 0.946 44 H 0.040 0.960 45 H 0.077 0.923 46 H 0.090 0.910 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.065 -22.828 11.713 25.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.067 4.067 3 C 0.027 3.973 4 N -0.239 5.239 5 C -0.049 4.049 6 C -0.136 4.136 7 C -0.192 4.192 8 C 0.392 3.608 9 O -0.424 6.424 10 N -0.348 5.348 11 C 0.058 3.942 12 H 0.085 0.915 13 C -0.172 4.172 14 C 0.058 3.942 15 N -0.327 5.327 16 C -0.379 4.379 17 H 0.098 0.902 18 C -0.250 4.250 19 N -0.586 5.586 20 Si 0.791 3.209 21 H -0.217 1.217 22 H -0.227 1.227 23 H -0.188 1.188 24 C 0.054 3.946 25 H 0.032 0.968 26 C -0.184 4.184 27 C -0.158 4.158 28 O -0.076 6.076 29 H 0.073 0.927 30 H 0.120 0.880 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.250 0.750 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.010 0.990 42 H 0.056 0.944 43 H 0.073 0.927 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.108 0.892 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.912 -22.177 12.557 25.501 hybrid contribution -0.633 1.140 -1.384 1.902 sum -1.545 -21.036 11.173 23.870 Atomic orbital electron populations 1.21799 0.92034 1.04658 1.02204 1.20568 0.97453 0.81038 1.07663 1.27681 0.94201 0.97574 0.77853 1.70383 1.19148 1.03608 1.30780 1.22400 0.96394 0.94573 0.91534 1.20408 1.02860 0.92673 0.97677 1.22691 1.14545 0.86854 0.95152 1.16482 0.77702 0.84456 0.82123 1.90859 1.49240 1.27930 1.74391 1.45965 1.66351 1.17774 1.04673 1.20822 0.96372 0.86366 0.90656 0.91494 1.22335 0.97966 0.98009 0.98887 1.20430 0.96360 0.92154 0.85266 1.44435 1.37449 1.48870 1.01946 1.19555 1.33620 0.95355 0.89382 0.90223 1.25862 1.03250 0.95547 1.00386 1.70197 1.47684 1.03608 1.37136 0.85314 0.78765 0.76688 0.80087 1.21664 1.22729 1.18764 1.20629 0.89274 0.89024 0.95653 0.96773 1.21708 1.01146 1.00229 0.95343 1.22210 1.02032 0.98557 0.93028 1.84434 1.63638 1.21718 1.37763 0.92743 0.87964 0.92889 0.85973 0.85544 0.89499 0.88838 0.89786 0.74961 0.92122 0.93376 0.92759 0.99024 0.94413 0.92657 0.94081 0.90418 0.89170 0.90638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.89 71.98 0.71 -0.50 16 2 C -0.03 -0.26 6.56 29.85 0.20 -0.07 16 3 C 0.23 4.52 7.57 88.29 0.67 5.19 16 4 N -0.51 -12.30 11.26 -291.06 -3.28 -15.57 16 5 C 0.07 2.00 7.16 41.84 0.30 2.30 16 6 C -0.08 -1.85 9.87 71.24 0.70 -1.15 16 7 C -0.14 -3.79 7.18 24.05 0.17 -3.61 16 8 C 0.61 18.93 7.75 86.46 0.67 19.60 16 9 O -0.54 -20.30 14.45 -4.31 -0.06 -20.36 16 10 N -0.70 -19.64 5.07 -446.33 -2.26 -21.91 16 11 C 0.16 5.46 2.42 45.02 0.11 5.57 16 12 H 0.07 2.56 7.57 -2.39 -0.02 2.54 16 13 C -0.13 -5.26 5.65 30.67 0.17 -5.08 16 14 C 0.18 9.18 5.29 86.36 0.46 9.64 16 15 N -0.60 -29.49 2.99 -675.22 -2.02 -31.51 16 16 C -0.25 -13.18 8.58 84.03 0.72 -12.46 16 17 H 0.08 4.01 6.22 -2.91 -0.02 3.99 16 18 C -0.06 -3.09 4.92 84.86 0.42 -2.67 16 19 N -0.94 -56.43 11.25 21.65 0.24 -56.19 16 20 Si 0.96 44.73 29.58 68.60 2.03 46.76 16 21 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 22 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 24 C 0.16 6.26 3.50 44.97 0.16 6.42 16 25 H 0.01 0.61 8.14 -2.39 -0.02 0.59 16 26 C -0.13 -4.31 7.95 71.98 0.57 -3.73 16 27 C -0.12 -3.63 4.84 30.67 0.15 -3.48 16 28 O -0.19 -4.29 10.57 -7.12 -0.08 -4.37 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.13 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 35 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.08 2.20 6.47 -2.39 -0.02 2.19 16 37 H 0.41 9.34 8.40 -92.71 -0.78 8.56 16 38 H 0.06 2.36 8.14 -2.38 -0.02 2.34 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 3.06 6.14 -2.39 -0.01 3.04 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 43 H 0.05 1.86 7.40 -2.38 -0.02 1.84 16 44 H 0.04 1.56 7.66 -2.39 -0.02 1.54 16 45 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 46 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 Total: -1.00 -70.58 377.80 0.95 -69.62 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: 0.20 Total: 17.55 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.18 Total: 15.96 kcal Atomic # 7 Polarization: -117.86 SS G_CDS: -7.31 Total: -125.17 kcal Atomic # 8 Polarization: -24.59 SS G_CDS: -0.14 Total: -24.73 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -70.58 0.95 -69.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947898885.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.955 kcal (2) G-P(sol) polarization free energy of solvation -70.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds