Wall clock time and date at job start Tue Mar 31 2020 13:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50699 * 109.46761 * 2 1 4 4 N 1.30011 * 127.34127 * 90.02479 * 3 2 1 5 5 O 1.20653 * 112.30733 * 179.97438 * 4 3 2 6 6 C 1.33493 * 113.15469 * 359.97438 * 5 4 3 7 7 C 1.50707 * 126.82939 * 180.02562 * 6 5 4 8 8 C 1.37358 * 106.34322 * 359.97438 * 6 5 4 9 9 C 1.47401 * 128.56613 * 179.97438 * 8 6 5 10 10 O 1.21610 * 119.99609 * 89.98062 * 9 8 6 11 11 N 1.34773 * 120.00091 * 269.97994 * 9 8 6 12 12 C 1.46503 * 120.00207 * 180.02562 * 11 9 8 13 13 H 1.09002 * 109.45582 * 34.99574 * 12 11 9 14 14 C 1.53040 * 109.45597 * 275.02870 * 12 11 9 15 15 C 1.53161 * 109.32526 * 301.35171 * 14 12 11 16 16 N 1.46923 * 108.77363 * 305.35823 * 15 14 12 17 17 C 1.36934 * 120.63482 * 233.58799 * 16 15 14 18 18 H 1.07998 * 119.99899 * 150.18680 * 17 16 15 19 19 C 1.38816 * 119.99754 * 330.18815 * 17 16 15 20 20 N 1.31610 * 120.00098 * 344.47775 * 19 17 16 21 21 Si 1.86807 * 119.99689 * 164.48054 * 19 17 16 22 22 H 1.48498 * 109.47182 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46768 * 119.99729 * 21 19 17 24 24 H 1.48494 * 109.46663 * 239.99709 * 21 19 17 25 25 C 1.46933 * 118.73464 * 53.60833 * 16 15 14 26 26 H 1.09004 * 109.58312 * 66.18169 * 25 16 15 27 27 C 1.53002 * 109.58358 * 186.60322 * 25 16 15 28 28 C 1.53036 * 109.46171 * 154.97076 * 12 11 9 29 29 H 1.08998 * 109.47506 * 300.00115 * 1 2 3 30 30 H 1.09000 * 109.47294 * 60.00561 * 1 2 3 31 31 H 1.09006 * 109.47021 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47506 * 239.99885 * 2 1 3 33 33 H 1.09000 * 109.47294 * 119.99439 * 2 1 3 34 34 H 1.09001 * 109.47038 * 0.02562 * 7 6 5 35 35 H 1.08996 * 109.46723 * 120.02249 * 7 6 5 36 36 H 1.08997 * 109.46886 * 240.02405 * 7 6 5 37 37 H 0.97008 * 120.00053 * 359.97438 * 11 9 8 38 38 H 1.08991 * 109.50300 * 61.29704 * 14 12 11 39 39 H 1.09002 * 109.48967 * 181.39283 * 14 12 11 40 40 H 1.09004 * 109.58800 * 185.57631 * 15 14 12 41 41 H 1.09000 * 109.70632 * 65.21675 * 15 14 12 42 42 H 0.97005 * 120.00053 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.46776 * 179.29071 * 27 25 16 44 44 H 1.08994 * 109.47539 * 299.29048 * 27 25 16 45 45 H 1.09000 * 109.46813 * 59.29417 * 27 25 16 46 46 H 1.09000 * 109.49795 * 178.60813 * 28 12 11 47 47 H 1.09006 * 109.49909 * 298.70396 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2954 2.1642 1.0336 5 8 2.6841 3.2627 0.7207 6 6 2.7473 3.4404 -0.6009 7 6 3.1889 4.6862 -1.3248 8 6 2.3311 2.2614 -1.1697 9 6 2.2114 1.9228 -2.5993 10 8 3.1553 1.4328 -3.1891 11 7 1.0560 2.1562 -3.2527 12 6 0.9368 1.8191 -4.6734 13 1 1.5111 0.9163 -4.8818 14 6 1.4785 2.9743 -5.5186 15 6 0.6923 4.2490 -5.1980 16 7 -0.7398 3.9818 -5.3889 17 6 -1.4972 4.7840 -6.1999 18 1 -2.3500 4.3742 -6.7206 19 6 -1.1688 6.1241 -6.3529 20 7 -0.3404 6.6993 -5.5073 21 14 -1.9029 7.1110 -7.7589 22 1 -2.7979 6.2390 -8.5613 23 1 -2.6832 8.2491 -7.2102 24 1 -0.8116 7.6294 -8.6223 25 6 -1.3438 2.8377 -4.6925 26 1 -1.3272 3.0143 -3.6170 27 6 -2.7882 2.6553 -5.1630 28 6 -0.5345 1.5786 -5.0188 29 1 -0.3634 0.5138 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 3.4604 5.4518 -0.5980 35 1 4.0516 4.4566 -1.9501 36 1 2.3739 5.0513 -1.9498 37 1 0.3029 2.5467 -2.7821 38 1 2.5326 3.1299 -5.2891 39 1 1.3675 2.7345 -6.5760 40 1 1.0068 5.0502 -5.8668 41 1 0.8746 4.5431 -4.1644 42 1 -0.1112 7.6358 -5.6140 43 1 -3.2305 1.7985 -4.6546 44 1 -3.3623 3.5520 -4.9300 45 1 -2.8009 2.4853 -6.2396 46 1 -0.6266 1.3520 -6.0810 47 1 -0.9134 0.7408 -4.4334 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948025569.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:07:30 Heat of formation + Delta-G solvation = 30.840364 kcal Electronic energy + Delta-G solvation = -28831.254210 eV Core-core repulsion = 25017.508528 eV Total energy + Delta-G solvation = -3813.745682 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.85524 -39.76414 -37.69309 -35.37402 -34.33585 -33.60907 -32.37739 -31.50649 -31.16641 -29.70600 -27.93974 -26.47739 -25.29783 -24.80294 -23.86995 -22.09697 -21.00851 -20.61105 -19.83842 -18.70792 -17.92518 -17.70534 -16.46320 -16.32668 -15.49446 -15.17391 -14.93659 -14.55300 -14.34569 -14.00351 -13.86967 -13.76185 -13.41279 -13.22679 -13.17506 -12.86105 -12.81212 -12.58941 -12.46292 -11.92162 -11.75590 -11.60628 -11.49496 -11.26274 -11.07181 -10.95382 -10.73813 -10.69857 -10.45772 -10.22129 -10.13176 -10.04201 -9.86376 -9.74571 -9.37449 -9.31162 -8.70997 -8.51526 -6.68631 -5.83799 -3.27669 1.33461 1.89807 2.59167 2.85708 3.33114 3.41997 3.42877 3.49099 4.02822 4.23078 4.44148 4.84434 4.92964 5.00159 5.07687 5.16968 5.25317 5.29798 5.31309 5.39209 5.44246 5.54186 5.55760 5.61243 5.65550 5.77038 5.86699 5.92510 5.95345 6.02688 6.05313 6.17030 6.25412 6.30419 6.39291 6.50589 6.54906 6.68609 6.87971 6.95017 6.99784 7.30589 7.60106 7.72636 7.78050 8.20672 8.36378 8.40915 9.16711 9.79868 10.36580 11.24649 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.015669 B = 0.004034 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.583714 B = 6939.472390 C = 7608.723286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.046 4.046 3 C 0.057 3.943 4 N -0.359 5.359 5 O 0.093 5.907 6 C 0.025 3.975 7 C -0.083 4.083 8 C -0.251 4.251 9 C 0.600 3.400 10 O -0.536 6.536 11 N -0.699 5.699 12 C 0.153 3.847 13 H 0.074 0.926 14 C -0.154 4.154 15 C 0.176 3.824 16 N -0.586 5.586 17 C -0.251 4.251 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.168 3.832 26 H 0.019 0.981 27 C -0.137 4.137 28 C -0.139 4.139 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.403 0.597 38 H 0.054 0.946 39 H 0.065 0.935 40 H 0.085 0.915 41 H 0.017 0.983 42 H 0.252 0.748 43 H 0.038 0.962 44 H 0.061 0.939 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.865 -9.608 8.597 13.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.084 4.084 3 C -0.106 4.106 4 N -0.065 5.065 5 O 0.032 5.968 6 C -0.038 4.038 7 C -0.140 4.140 8 C -0.259 4.259 9 C 0.383 3.617 10 O -0.413 6.413 11 N -0.350 5.350 12 C 0.050 3.950 13 H 0.092 0.908 14 C -0.194 4.194 15 C 0.051 3.949 16 N -0.309 5.309 17 C -0.380 4.380 18 H 0.087 0.913 19 C -0.194 4.194 20 N -0.547 5.547 21 Si 0.729 3.271 22 H -0.203 1.203 23 H -0.218 1.218 24 H -0.216 1.216 25 C 0.061 3.939 26 H 0.036 0.964 27 C -0.194 4.194 28 C -0.178 4.178 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.073 0.927 39 H 0.084 0.916 40 H 0.103 0.897 41 H 0.035 0.965 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.080 0.920 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.506 -9.939 9.462 14.164 hybrid contribution -0.632 0.786 -1.208 1.574 sum 2.875 -9.153 8.253 12.656 Atomic orbital electron populations 1.21733 0.93437 1.02555 1.02731 1.19984 0.96739 0.87631 1.04089 1.24709 1.00566 0.98658 0.86647 1.73563 1.16860 0.92628 1.23462 1.84521 1.62907 1.26617 1.22793 1.24701 0.98163 0.97499 0.83459 1.20555 1.03664 0.90420 0.99394 1.21969 1.13114 0.95237 0.95532 1.16819 0.83130 0.78091 0.83621 1.90791 1.38227 1.44190 1.68075 1.46137 1.14314 1.62800 1.11711 1.20961 0.96992 0.98145 0.78922 0.90772 1.22563 0.99448 0.98246 0.99180 1.20687 0.82382 0.92918 0.98945 1.44124 1.04321 1.29692 1.52795 1.19198 1.10844 0.89224 1.18759 0.91269 1.25069 0.99703 0.96337 0.98283 1.70012 1.38221 1.11179 1.35247 0.86283 0.78504 0.80071 0.82263 1.20278 1.21802 1.21625 1.20383 0.91817 0.87590 0.94087 0.96374 1.21797 0.96348 1.00300 1.00973 1.22371 0.94127 0.99243 1.02103 0.92261 0.91990 0.91414 0.89381 0.89697 0.89310 0.88547 0.87753 0.76131 0.92750 0.91626 0.89706 0.96480 0.93767 0.94334 0.91959 0.92623 0.90504 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.89 37.15 0.37 -1.03 16 2 C -0.05 -0.50 6.55 -27.89 -0.18 -0.69 16 3 C 0.06 0.78 6.84 -79.77 -0.55 0.23 16 4 N -0.36 -5.18 12.01 34.78 0.42 -4.76 16 5 O 0.09 1.28 11.06 18.65 0.21 1.49 16 6 C 0.03 0.34 7.55 -34.62 -0.26 0.08 16 7 C -0.08 -0.92 10.33 36.01 0.37 -0.55 16 8 C -0.25 -3.70 6.24 -102.89 -0.64 -4.34 16 9 C 0.60 9.71 7.60 -12.53 -0.10 9.62 16 10 O -0.54 -10.27 16.77 5.27 0.09 -10.18 16 11 N -0.70 -10.78 4.27 -54.85 -0.23 -11.02 16 12 C 0.15 2.50 2.78 -67.89 -0.19 2.31 16 13 H 0.07 1.21 7.58 -51.93 -0.39 0.82 16 14 C -0.15 -2.86 5.77 -26.63 -0.15 -3.01 16 15 C 0.18 3.87 5.02 -3.73 -0.02 3.85 16 16 N -0.59 -13.17 2.99 -164.79 -0.49 -13.66 16 17 C -0.25 -6.32 8.58 -15.06 -0.13 -6.45 16 18 H 0.07 1.72 6.23 -52.49 -0.33 1.39 16 19 C 0.00 0.12 4.94 -17.43 -0.09 0.04 16 20 N -0.90 -24.68 11.23 55.49 0.62 -24.06 16 21 Si 0.90 20.82 29.58 -169.99 -5.03 15.79 16 22 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 C 0.17 3.09 3.20 -67.60 -0.22 2.87 16 26 H 0.02 0.35 6.64 -51.93 -0.34 0.00 16 27 C -0.14 -2.35 7.95 37.16 0.30 -2.05 16 28 C -0.14 -2.16 5.07 -26.62 -0.13 -2.29 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.40 6.08 6.85 -40.82 -0.28 5.80 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 40 H 0.08 2.15 6.15 -51.93 -0.32 1.83 16 41 H 0.02 0.39 7.74 -51.93 -0.40 -0.01 16 42 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 43 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 45 H 0.05 0.98 7.40 -51.93 -0.38 0.59 16 46 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 47 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -29.59 377.94 -7.82 -37.42 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.48 Total: 4.70 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -1.62 Total: -1.42 kcal Atomic # 7 Polarization: -53.81 SS G_CDS: 0.32 Total: -53.50 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.29 Total: -8.69 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.03 Total: 15.79 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.59 -7.82 -37.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948025569.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.258 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds