Wall clock time and date at job start Tue Mar 31 2020 12:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50701 * 109.47394 * 2 1 4 4 O 1.33499 * 126.82692 * 270.04948 * 3 2 1 5 5 N 1.20657 * 113.15487 * 179.70447 * 4 3 2 6 6 C 1.30018 * 112.30295 * 0.42948 * 5 4 3 7 7 C 1.50701 * 127.33344 * 179.85970 * 6 5 4 8 8 C 1.37355 * 126.83024 * 89.99494 * 3 2 1 9 9 C 1.47396 * 128.56659 * 0.03979 * 8 3 2 10 10 O 1.21605 * 120.00041 * 270.02254 * 9 8 3 11 11 N 1.34783 * 119.99720 * 90.02405 * 9 8 3 12 12 C 1.46500 * 119.99799 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.46220 * 325.03208 * 12 11 9 14 14 C 1.53041 * 109.45955 * 85.00144 * 12 11 9 15 15 C 1.53191 * 109.31656 * 181.38637 * 14 12 11 16 16 N 1.46935 * 108.77171 * 305.36460 * 15 14 12 17 17 C 1.36927 * 120.62988 * 233.62902 * 16 15 14 18 18 H 1.07999 * 120.00254 * 150.87675 * 17 16 15 19 19 C 1.38817 * 120.00124 * 330.87468 * 17 16 15 20 20 N 1.31614 * 120.00108 * 160.74693 * 19 17 16 21 21 Si 1.86800 * 119.99952 * 340.74656 * 19 17 16 22 22 H 1.48501 * 109.46874 * 92.31740 * 21 19 17 23 23 H 1.48492 * 109.47273 * 212.31893 * 21 19 17 24 24 H 1.48499 * 109.46971 * 332.32228 * 21 19 17 25 25 C 1.46925 * 118.73567 * 53.60801 * 16 15 14 26 26 H 1.09001 * 109.58718 * 66.17916 * 25 16 15 27 27 C 1.52999 * 109.58394 * 186.46252 * 25 16 15 28 28 C 1.53044 * 109.46026 * 205.06733 * 12 11 9 29 29 H 1.09002 * 109.47570 * 299.99955 * 1 2 3 30 30 H 1.08999 * 109.47436 * 60.00140 * 1 2 3 31 31 H 1.08998 * 109.47371 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47570 * 240.00045 * 2 1 3 33 33 H 1.08999 * 109.47436 * 119.99860 * 2 1 3 34 34 H 1.08992 * 109.46938 * 269.67597 * 7 6 5 35 35 H 1.08998 * 109.47166 * 29.68428 * 7 6 5 36 36 H 1.09005 * 109.46717 * 149.67918 * 7 6 5 37 37 H 0.97000 * 120.00112 * 0.02562 * 11 9 8 38 38 H 1.09003 * 109.49851 * 301.33873 * 14 12 11 39 39 H 1.08998 * 109.49947 * 61.43007 * 14 12 11 40 40 H 1.08998 * 109.58319 * 65.14877 * 15 14 12 41 41 H 1.08996 * 109.58814 * 185.43699 * 15 14 12 42 42 H 0.97004 * 120.00432 * 180.02562 * 20 19 17 43 43 H 1.08997 * 109.47547 * 59.99455 * 27 25 16 44 44 H 1.08998 * 109.47619 * 180.02562 * 27 25 16 45 45 H 1.09004 * 109.46944 * 300.00089 * 27 25 16 46 46 H 1.08994 * 109.49615 * 298.56909 * 28 12 11 47 47 H 1.08995 * 109.49243 * 58.66419 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 2.2982 2.1755 -1.0686 5 7 2.6839 3.2827 -0.7834 6 6 2.7540 3.4649 0.5020 7 6 3.1935 4.7115 1.2258 8 6 2.3067 2.1971 1.0994 9 6 2.1835 1.8465 2.5258 10 8 1.1394 2.0521 3.1144 11 7 3.2280 1.2981 3.1776 12 6 3.1057 0.9502 4.5954 13 1 2.4709 1.6816 5.0954 14 6 2.4816 -0.4410 4.7270 15 6 2.3234 -0.7871 6.2109 16 7 3.6285 -0.6463 6.8710 17 6 4.1558 -1.6775 7.6014 18 1 5.2269 -1.7880 7.6847 19 6 3.3136 -2.5810 8.2350 20 7 3.7712 -3.7574 8.6075 21 14 1.5307 -2.1270 8.5589 22 1 0.6885 -2.5910 7.4272 23 1 1.0748 -2.7763 9.8141 24 1 1.4118 -0.6529 8.6925 25 6 4.3572 0.6220 6.7321 26 1 3.8058 1.4171 7.2340 27 6 5.7464 0.4866 7.3587 28 6 4.4927 0.9522 5.2424 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 4.2686 4.6702 1.4005 35 1 2.9572 5.5860 0.6196 36 1 2.6725 4.7799 2.1808 37 1 4.0609 1.1346 2.7081 38 1 1.5038 -0.4481 4.2455 39 1 3.1284 -1.1766 4.2488 40 1 1.6062 -0.1069 6.6702 41 1 1.9697 -1.8132 6.3110 42 1 3.1826 -4.3890 9.0499 43 1 6.2978 -0.3055 6.8523 44 1 6.2852 1.4284 7.2551 45 1 5.6457 0.2404 8.4158 46 1 5.1205 0.2036 4.7593 47 1 4.9460 1.9368 5.1277 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948032094.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:17 Heat of formation + Delta-G solvation = 13.789361 kcal Electronic energy + Delta-G solvation = -28142.987358 eV Core-core repulsion = 24328.502289 eV Total energy + Delta-G solvation = -3814.485069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.96195 -41.08839 -39.44500 -36.20599 -35.86218 -35.59598 -34.22662 -33.30450 -32.05284 -31.12131 -29.78778 -28.14340 -26.81356 -25.68604 -24.67919 -24.25540 -22.57896 -21.66687 -21.24122 -20.71771 -19.13087 -18.76643 -18.34367 -17.55701 -17.46199 -16.85186 -16.34938 -16.25557 -15.58551 -15.39350 -15.34758 -14.92143 -14.76017 -14.72981 -14.33796 -14.33321 -14.18596 -13.92387 -13.82910 -13.50623 -13.48710 -12.88104 -12.74012 -12.64919 -12.58507 -12.53388 -12.24490 -12.05076 -11.90092 -11.88175 -11.73037 -11.57242 -11.46643 -11.15151 -10.97642 -10.70978 -10.50776 -10.15273 -8.88371 -8.11623 -5.43848 0.22137 0.80934 1.25777 1.29908 1.41740 1.48856 1.69360 2.18909 2.44071 3.06082 3.08189 3.17525 3.31640 3.65047 3.79664 3.83040 3.94690 4.08720 4.18089 4.19643 4.24209 4.24813 4.46351 4.46551 4.56735 4.57435 4.61801 4.66402 4.72041 4.75397 4.83578 4.91056 4.93960 4.98204 5.00846 5.06066 5.06548 5.08023 5.20650 5.25084 5.40522 5.48663 5.58568 5.94492 6.23081 6.40879 6.96165 7.05468 7.13245 7.67890 8.08565 9.07814 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017917 B = 0.003463 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1562.395251 B = 8082.679927 C = 8926.639176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.036 3.964 4 O 0.093 5.907 5 N -0.375 5.375 6 C 0.054 3.946 7 C -0.079 4.079 8 C -0.271 4.271 9 C 0.606 3.394 10 O -0.564 6.564 11 N -0.694 5.694 12 C 0.160 3.840 13 H 0.072 0.928 14 C -0.130 4.130 15 C 0.125 3.875 16 N -0.615 5.615 17 C -0.233 4.233 18 H 0.072 0.928 19 C -0.031 4.031 20 N -0.957 5.957 21 Si 0.931 3.069 22 H -0.281 1.281 23 H -0.314 1.314 24 H -0.266 1.266 25 C 0.164 3.836 26 H 0.035 0.965 27 C -0.129 4.129 28 C -0.121 4.121 29 H 0.039 0.961 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.124 0.876 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.415 0.585 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.023 0.977 41 H 0.051 0.949 42 H 0.259 0.741 43 H 0.046 0.954 44 H 0.082 0.918 45 H 0.039 0.961 46 H 0.074 0.926 47 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.110 13.406 -19.373 23.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.087 4.087 3 C -0.027 4.027 4 O 0.034 5.966 5 N -0.084 5.084 6 C -0.108 4.108 7 C -0.136 4.136 8 C -0.278 4.278 9 C 0.391 3.609 10 O -0.443 6.443 11 N -0.345 5.345 12 C 0.056 3.944 13 H 0.090 0.910 14 C -0.170 4.170 15 C 0.000 4.000 16 N -0.340 5.340 17 C -0.363 4.363 18 H 0.090 0.910 19 C -0.226 4.226 20 N -0.604 5.604 21 Si 0.762 3.238 22 H -0.208 1.208 23 H -0.243 1.243 24 H -0.191 1.191 25 C 0.058 3.942 26 H 0.053 0.947 27 C -0.187 4.187 28 C -0.161 4.161 29 H 0.058 0.942 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.143 0.857 33 H 0.118 0.882 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.252 0.748 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.100 0.900 45 H 0.058 0.942 46 H 0.092 0.908 47 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.599 14.187 -19.936 24.476 hybrid contribution -0.915 -0.715 1.238 1.697 sum -1.514 13.472 -18.698 23.096 Atomic orbital electron populations 1.21777 0.92771 1.04038 1.02144 1.20461 0.97198 0.84357 1.06675 1.25131 0.96313 0.96802 0.84484 1.84512 1.61765 1.17251 1.33107 1.73607 1.18740 0.99053 1.16988 1.25186 0.99539 0.97229 0.88880 1.20365 1.03408 0.90451 0.99394 1.21870 1.14868 0.96436 0.94631 1.16982 0.83305 0.76399 0.84211 1.90824 1.29790 1.55151 1.68541 1.45981 1.15555 1.61601 1.11316 1.20790 0.98165 0.95415 0.80075 0.91013 1.22230 1.00715 0.97348 0.96706 1.21261 0.87667 0.98816 0.92305 1.44661 1.19539 1.12416 1.57377 1.18933 0.92778 1.02080 1.22473 0.90998 1.25816 1.00814 0.96519 0.99421 1.69919 1.37397 1.07029 1.46064 0.86150 0.83233 0.78402 0.76028 1.20825 1.24348 1.19124 1.20688 0.93176 0.86416 0.93875 0.94697 1.21729 0.95256 1.01515 1.00161 1.22211 0.94733 1.03148 0.95963 0.94166 0.91360 0.89116 0.85744 0.88218 0.87583 0.88937 0.90034 0.74832 0.92148 0.91245 0.95918 0.93105 0.93215 0.93443 0.89962 0.94176 0.90768 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.89 71.98 0.71 -1.50 16 2 C -0.05 -0.68 6.38 29.85 0.19 -0.49 16 3 C 0.04 0.70 6.80 25.48 0.17 0.88 16 4 O 0.09 1.94 11.06 76.93 0.85 2.79 16 5 N -0.38 -8.53 12.01 -44.77 -0.54 -9.07 16 6 C 0.05 1.14 7.59 45.16 0.34 1.48 16 7 C -0.08 -1.18 10.49 71.24 0.75 -0.44 16 8 C -0.27 -6.05 6.24 -18.74 -0.12 -6.17 16 9 C 0.61 15.67 7.57 86.65 0.66 16.33 16 10 O -0.56 -19.37 16.77 -4.05 -0.07 -19.44 16 11 N -0.69 -15.34 5.07 -445.69 -2.26 -17.61 16 12 C 0.16 4.43 2.42 45.02 0.11 4.54 16 13 H 0.07 2.26 7.57 -2.39 -0.02 2.24 16 14 C -0.13 -4.30 5.65 30.67 0.17 -4.13 16 15 C 0.13 5.26 4.20 86.36 0.36 5.62 16 16 N -0.61 -27.13 2.75 -675.23 -1.86 -28.98 16 17 C -0.23 -12.43 9.04 84.04 0.76 -11.67 16 18 H 0.07 4.08 6.40 -2.91 -0.02 4.06 16 19 C -0.03 -1.79 5.24 84.86 0.45 -1.34 16 20 N -0.96 -59.04 13.97 21.65 0.30 -58.74 16 21 Si 0.93 46.73 24.34 68.60 1.67 48.40 16 22 H -0.28 -13.56 6.62 99.48 0.66 -12.91 16 23 H -0.31 -16.16 7.11 99.48 0.71 -15.45 16 24 H -0.27 -13.00 6.63 99.48 0.66 -12.34 16 25 C 0.16 5.64 3.49 44.97 0.16 5.80 16 26 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 27 C -0.13 -4.18 7.95 71.98 0.57 -3.61 16 28 C -0.12 -3.13 4.85 30.67 0.15 -2.98 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.12 1.03 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.44 8.11 -2.39 -0.02 1.42 16 34 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.41 6.86 8.59 -92.71 -0.80 6.07 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 40 H 0.02 0.98 7.03 -2.39 -0.02 0.96 16 41 H 0.05 2.38 4.62 -2.39 -0.01 2.37 16 42 H 0.26 15.35 8.31 -92.70 -0.77 14.58 16 43 H 0.05 1.63 7.44 -2.39 -0.02 1.61 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.04 1.49 7.62 -2.39 -0.02 1.47 16 46 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -71.45 375.67 3.62 -67.83 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: 0.09 Total: 12.52 kcal Atomic # 6 Polarization: -3.12 SS G_CDS: 5.43 Total: 2.31 kcal Atomic # 7 Polarization: -110.05 SS G_CDS: -4.35 Total: -114.40 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.78 Total: -16.65 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.67 Total: 48.40 kcal Total: -71.45 3.62 -67.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948032094.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.616 kcal (2) G-P(sol) polarization free energy of solvation -71.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds