Wall clock time and date at job start Tue Mar 31 2020 13:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.46852 * 2 1 4 4 N 1.29937 * 125.38045 * 89.99860 * 3 2 1 5 5 C 1.36060 * 108.47898 * 179.97438 * 4 3 2 6 6 C 1.47420 * 126.45075 * 179.97438 * 5 4 3 7 7 O 1.21611 * 120.00414 * 186.38126 * 6 5 4 8 8 N 1.34775 * 119.99965 * 6.38078 * 6 5 4 9 9 C 1.46503 * 119.99966 * 355.29190 * 8 6 5 10 10 C 1.46503 * 120.00496 * 175.28521 * 8 6 5 11 11 H 1.08999 * 108.44135 * 2.31362 * 10 8 6 12 12 C 1.52565 * 108.39281 * 244.69160 * 10 8 6 13 13 C 1.50884 * 109.35919 * 153.82217 * 12 10 8 14 14 C 1.54295 * 110.23238 * 91.79514 * 13 12 10 15 15 N 1.47596 * 111.94515 * 319.70023 * 14 13 12 16 16 C 1.36939 * 118.64115 * 137.78056 * 15 14 13 17 17 H 1.07998 * 119.99942 * 207.79299 * 16 15 14 18 18 C 1.38807 * 120.00004 * 27.80040 * 16 15 14 19 19 N 1.31616 * 120.00529 * 21.98261 * 18 16 15 20 20 Si 1.86806 * 119.99885 * 201.99163 * 18 16 15 21 21 H 1.48494 * 109.47469 * 94.98461 * 20 18 16 22 22 H 1.48498 * 109.46990 * 214.98847 * 20 18 16 23 23 H 1.48501 * 109.46774 * 334.98265 * 20 18 16 24 24 C 1.44584 * 122.71470 * 317.49926 * 15 14 13 25 25 C 1.47094 * 108.51229 * 120.00120 * 10 8 6 26 26 C 1.36086 * 107.10267 * 0.26040 * 5 4 3 27 27 O 1.34044 * 125.38012 * 269.95613 * 3 2 1 28 28 H 1.08997 * 109.47612 * 60.00414 * 1 2 3 29 29 H 1.09005 * 109.46924 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47662 * 299.99524 * 1 2 3 31 31 H 1.08994 * 109.47587 * 240.00188 * 2 1 3 32 32 H 1.09004 * 109.47262 * 119.99368 * 2 1 3 33 33 H 1.09009 * 109.46614 * 274.94550 * 9 8 6 34 34 H 1.08994 * 109.47075 * 34.94265 * 9 8 6 35 35 H 1.08996 * 109.47450 * 154.95088 * 9 8 6 36 36 H 1.08999 * 109.48847 * 273.78392 * 12 10 8 37 37 H 1.08999 * 109.49197 * 33.83021 * 12 10 8 38 38 H 1.09001 * 109.36843 * 212.07929 * 13 12 10 39 39 H 1.09002 * 109.36329 * 331.82183 * 13 12 10 40 40 H 1.09003 * 109.13690 * 199.01337 * 14 13 12 41 41 H 1.09005 * 108.96002 * 80.27447 * 14 13 12 42 42 H 0.97003 * 120.00499 * 179.97438 * 19 18 16 43 43 H 1.09005 * 109.44988 * 211.02529 * 24 15 14 44 44 H 1.09002 * 109.44469 * 330.97188 * 24 15 14 45 45 H 1.08994 * 109.32752 * 63.63759 * 25 10 8 46 46 H 1.09002 * 109.32358 * 304.16180 * 25 10 8 47 47 H 1.08005 * 126.52936 * 179.74043 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2829 2.1302 1.0594 5 6 2.7174 3.3574 0.6638 6 6 3.1113 4.4727 1.5438 7 8 3.3723 5.5605 1.0670 8 7 3.1821 4.2867 2.8768 9 6 2.7689 3.0083 3.4610 10 6 3.6723 5.3628 3.7416 11 1 3.8857 6.2334 3.1215 12 6 4.9724 4.9020 4.3935 13 6 5.8128 6.1064 4.7394 14 6 5.5128 6.5706 6.1799 15 7 4.0727 6.4969 6.4945 16 6 3.6919 6.0137 7.7179 17 1 2.7323 5.5318 7.8334 18 6 4.5393 6.1433 8.8097 19 7 5.4751 7.0689 8.8103 20 14 4.3517 5.0039 10.2781 21 1 5.2856 3.8579 10.1380 22 1 4.6643 5.7477 11.5248 23 1 2.9560 4.5005 10.3388 24 6 3.0475 6.9194 5.5666 25 6 2.6091 5.7173 4.6943 26 6 2.7138 3.3637 -0.6970 27 8 2.2917 2.1523 -1.0929 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5137 0.8900 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5137 0.8901 33 1 1.6913 3.0153 3.6253 34 1 3.0273 2.1973 2.7802 35 1 3.2804 2.8612 4.4122 36 1 4.7457 4.3438 5.3019 37 1 5.5199 4.2627 3.7010 38 1 6.8682 5.8469 4.6555 39 1 5.5840 6.9173 4.0479 40 1 5.8493 7.6003 6.3009 41 1 6.0605 5.9369 6.8775 42 1 6.0670 7.1597 9.5734 43 1 2.1889 7.2973 6.1217 44 1 3.4411 7.7083 4.9255 45 1 2.4008 4.8620 5.3370 46 1 1.7055 5.9809 4.1447 47 1 2.9990 4.1858 -1.3368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000948309587.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:35:55 Heat of formation + Delta-G solvation = -1.771209 kcal Electronic energy + Delta-G solvation = -28081.132415 eV Core-core repulsion = 24265.972589 eV Total energy + Delta-G solvation = -3815.159826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.50124 -41.29387 -39.23241 -36.91177 -36.11629 -34.94498 -34.35599 -33.33710 -32.10296 -30.47759 -28.12339 -27.73129 -26.29918 -25.44148 -25.22748 -24.24288 -22.35462 -21.34303 -21.06051 -20.42302 -18.72342 -18.54976 -17.89576 -17.78057 -17.25009 -16.92347 -16.35415 -15.93629 -15.72782 -15.42474 -15.35737 -15.29004 -14.85058 -14.51388 -14.29355 -14.12966 -13.98279 -13.70918 -13.56092 -13.34305 -13.21218 -12.98534 -12.71604 -12.61570 -12.39336 -12.34196 -12.14850 -12.01927 -11.97921 -11.85906 -11.67053 -11.46554 -11.44596 -11.35407 -11.00501 -10.44697 -10.13865 -9.64192 -8.66031 -7.85617 -5.30609 0.04768 0.93754 1.46988 1.49287 1.55963 1.57923 1.89383 2.16091 2.53311 2.80195 3.26256 3.49280 3.65458 3.77035 3.78792 4.06186 4.20052 4.23159 4.27460 4.35843 4.38561 4.40876 4.42850 4.57154 4.58408 4.67198 4.71832 4.75165 4.90892 4.93832 4.95725 5.01009 5.06385 5.08760 5.11786 5.20524 5.24181 5.30227 5.37933 5.43160 5.52936 5.58966 5.68170 5.75261 6.27199 6.41896 6.48754 6.99023 7.18702 7.93968 8.36148 9.19506 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.003069 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.659329 B = 9122.575983 C = 9963.205759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.027 4.027 3 C 0.201 3.799 4 N -0.476 5.476 5 C -0.095 4.095 6 C 0.590 3.410 7 O -0.576 6.576 8 N -0.594 5.594 9 C 0.078 3.922 10 C 0.161 3.839 11 H 0.075 0.925 12 C -0.097 4.097 13 C -0.128 4.128 14 C 0.189 3.811 15 N -0.599 5.599 16 C -0.266 4.266 17 H 0.064 0.936 18 C -0.043 4.043 19 N -0.930 5.930 20 Si 0.958 3.042 21 H -0.286 1.286 22 H -0.298 1.298 23 H -0.268 1.268 24 C 0.160 3.840 25 C -0.133 4.133 26 C 0.026 3.974 27 O -0.193 6.193 28 H 0.057 0.943 29 H 0.095 0.905 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.053 0.947 34 H 0.111 0.889 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.054 0.946 40 H -0.003 1.003 41 H 0.036 0.964 42 H 0.249 0.751 43 H 0.044 0.956 44 H 0.037 0.963 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -16.099 -21.013 27.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.008 4.008 4 N -0.206 5.206 5 C -0.213 4.213 6 C 0.379 3.621 7 O -0.457 6.457 8 N -0.323 5.323 9 C -0.064 4.064 10 C 0.059 3.941 11 H 0.093 0.907 12 C -0.136 4.136 13 C -0.167 4.167 14 C 0.064 3.936 15 N -0.321 5.321 16 C -0.396 4.396 17 H 0.082 0.918 18 C -0.239 4.239 19 N -0.575 5.575 20 Si 0.786 3.214 21 H -0.213 1.213 22 H -0.225 1.225 23 H -0.192 1.192 24 C 0.033 3.967 25 C -0.174 4.174 26 C -0.048 4.048 27 O -0.079 6.079 28 H 0.076 0.924 29 H 0.114 0.886 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.092 0.908 39 H 0.073 0.927 40 H 0.015 0.985 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.079 0.921 47 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -7.293 -15.703 -20.512 26.842 hybrid contribution 0.286 0.405 0.662 0.827 sum -7.007 -15.298 -19.850 26.022 Atomic orbital electron populations 1.21781 0.92421 1.04266 1.02158 1.20419 0.97198 0.81640 1.07172 1.27395 0.97532 0.98021 0.77821 1.70891 1.17145 1.02573 1.29958 1.21605 1.11784 0.94349 0.93603 1.17207 0.77008 0.85857 0.82062 1.90768 1.53137 1.26165 1.75594 1.48116 1.62409 1.16364 1.05445 1.22208 0.99730 0.84677 0.99779 1.19981 0.93857 0.89347 0.90915 0.90711 1.21135 0.94575 0.97946 0.99916 1.21869 0.99771 0.97480 0.97561 1.20806 0.83797 0.96700 0.92327 1.43839 1.01061 1.73889 1.13316 1.19421 1.03566 1.30150 0.86477 0.91796 1.25714 0.99757 0.98675 0.99733 1.70264 1.23392 1.32400 1.31492 0.85402 0.78156 0.78840 0.78991 1.21305 1.22467 1.19225 1.20667 0.91602 0.93272 0.91203 1.21579 0.97216 1.00974 0.97624 1.25678 0.97077 0.86983 0.95060 1.84421 1.63325 1.22171 1.38018 0.92414 0.88580 0.93199 0.86250 0.86324 0.92841 0.87166 0.91720 0.92075 0.91937 0.90776 0.92708 0.98479 0.94496 0.94185 0.93757 0.94444 0.92267 0.92119 0.73115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.89 71.98 0.71 -0.37 16 2 C -0.03 -0.21 6.56 29.85 0.20 -0.01 16 3 C 0.20 3.37 7.56 88.39 0.67 4.04 16 4 N -0.48 -10.75 7.82 -293.05 -2.29 -13.04 16 5 C -0.09 -2.44 6.68 40.41 0.27 -2.17 16 6 C 0.59 18.99 7.66 86.66 0.66 19.65 16 7 O -0.58 -21.43 16.20 -4.07 -0.07 -21.49 16 8 N -0.59 -18.87 2.58 -837.70 -2.16 -21.04 16 9 C 0.08 2.13 8.64 127.77 1.10 3.24 16 10 C 0.16 5.70 1.95 43.01 0.08 5.78 16 11 H 0.07 2.89 6.04 -2.39 -0.01 2.88 16 12 C -0.10 -3.50 4.36 29.76 0.13 -3.37 16 13 C -0.13 -4.90 5.71 30.35 0.17 -4.73 16 14 C 0.19 9.18 4.75 86.61 0.41 9.59 16 15 N -0.60 -29.85 2.25 -697.69 -1.57 -31.42 16 16 C -0.27 -14.46 9.37 84.03 0.79 -13.68 16 17 H 0.06 3.42 7.92 -2.91 -0.02 3.40 16 18 C -0.04 -2.37 4.68 84.86 0.40 -1.97 16 19 N -0.93 -55.24 11.55 21.65 0.25 -54.99 16 20 Si 0.96 44.74 29.61 68.60 2.03 46.77 16 21 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 C 0.16 6.87 5.65 87.37 0.49 7.36 16 25 C -0.13 -4.90 4.89 29.39 0.14 -4.76 16 26 C 0.03 0.51 11.95 67.32 0.80 1.31 16 27 O -0.19 -3.33 10.73 0.46 0.00 -3.32 16 28 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.11 2.80 5.13 -2.39 -0.01 2.79 16 35 H 0.06 1.81 7.20 -2.39 -0.02 1.79 16 36 H 0.06 2.44 7.20 -2.39 -0.02 2.43 16 37 H 0.06 2.07 8.04 -2.39 -0.02 2.05 16 38 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 39 H 0.05 2.05 7.32 -2.39 -0.02 2.04 16 40 H 0.00 -0.15 8.04 -2.39 -0.02 -0.17 16 41 H 0.04 1.98 6.62 -2.38 -0.02 1.96 16 42 H 0.25 14.35 8.31 -92.71 -0.77 13.58 16 43 H 0.04 1.93 7.99 -2.38 -0.02 1.91 16 44 H 0.04 1.56 8.06 -2.39 -0.02 1.54 16 45 H 0.06 2.27 7.59 -2.39 -0.02 2.25 16 46 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 47 H 0.25 3.43 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -69.67 371.03 4.20 -65.47 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.96 Total: 13.14 kcal Atomic # 6 Polarization: 12.89 SS G_CDS: 7.04 Total: 19.93 kcal Atomic # 7 Polarization: -114.72 SS G_CDS: -5.77 Total: -120.50 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.06 Total: -24.82 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.67 4.20 -65.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948309587.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.701 kcal (2) G-P(sol) polarization free energy of solvation -69.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds