Wall clock time and date at job start Tue Mar 31 2020 13:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52993 * 109.47158 * 2 1 4 4 C 1.50700 * 109.46922 * 179.97438 * 3 2 1 5 5 N 1.34667 * 125.80409 * 265.16317 * 4 3 2 6 6 H 0.96996 * 124.84912 * 0.02562 * 5 4 3 7 7 C 1.36440 * 110.29976 * 180.30452 * 5 4 3 8 8 C 1.34493 * 108.85683 * 359.72605 * 7 5 4 9 9 C 1.36772 * 125.80431 * 85.00180 * 4 3 2 10 10 C 1.47268 * 126.93902 * 359.97438 * 9 4 3 11 11 O 1.21624 * 120.00001 * 359.70922 * 10 9 4 12 12 N 1.34775 * 119.99657 * 179.71648 * 10 9 4 13 13 C 1.46500 * 119.99538 * 180.02562 * 12 10 9 14 14 C 1.53007 * 109.47149 * 179.97438 * 13 12 10 15 15 H 1.08999 * 110.77535 * 51.76040 * 14 13 12 16 16 C 1.54315 * 110.71722 * 288.52141 * 14 13 12 17 17 N 1.47023 * 107.27241 * 219.44307 * 16 14 13 18 18 C 1.36933 * 125.65507 * 178.99274 * 17 16 14 19 19 H 1.08004 * 119.99383 * 359.97438 * 18 17 16 20 20 C 1.38809 * 120.00263 * 179.97438 * 18 17 16 21 21 N 1.31615 * 120.00277 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99805 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47378 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.47332 * 120.00014 * 22 20 18 25 25 H 1.48503 * 109.47041 * 239.99753 * 22 20 18 26 26 C 1.47426 * 108.69981 * 358.93706 * 17 16 14 27 27 C 1.54907 * 104.82942 * 24.13288 * 26 17 16 28 28 H 1.09005 * 111.04094 * 81.08152 * 27 26 17 29 29 O 1.42903 * 111.00431 * 204.90944 * 27 26 17 30 30 H 1.09002 * 109.46848 * 300.00604 * 1 2 3 31 31 H 1.09003 * 109.47071 * 60.00269 * 1 2 3 32 32 H 1.08998 * 109.47064 * 180.02562 * 1 2 3 33 33 H 1.08994 * 109.47142 * 239.99246 * 2 1 3 34 34 H 1.09001 * 109.46556 * 119.99642 * 2 1 3 35 35 H 1.09002 * 109.47734 * 59.99938 * 3 2 1 36 36 H 1.09001 * 109.47095 * 299.99312 * 3 2 1 37 37 H 1.07997 * 125.57302 * 179.70633 * 7 5 4 38 38 H 1.08001 * 126.83521 * 180.02562 * 8 7 5 39 39 H 0.96993 * 120.00285 * 359.97438 * 12 10 9 40 40 H 1.09000 * 109.47659 * 59.99915 * 13 12 10 41 41 H 1.09007 * 109.46961 * 299.99408 * 13 12 10 42 42 H 1.09003 * 109.88697 * 338.85781 * 16 14 13 43 43 H 1.09000 * 109.88663 * 100.02422 * 16 14 13 44 44 H 0.96999 * 120.00355 * 179.97438 * 21 20 18 45 45 H 1.08994 * 110.37345 * 265.29076 * 26 17 16 46 46 H 1.09007 * 110.36591 * 142.96519 * 26 17 16 47 47 H 0.96700 * 114.00311 * 292.19952 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3344 1.5346 1.0892 6 1 4.0127 1.6116 2.0011 7 6 5.6493 1.5105 0.7258 8 6 5.7285 1.3955 -0.6118 9 6 4.3476 1.3455 -1.1040 10 6 3.9113 1.2223 -2.5052 11 8 2.7252 1.1931 -2.7725 12 7 4.8265 1.1417 -3.4913 13 6 4.3925 1.0197 -4.8852 14 6 5.6191 0.9476 -5.7969 15 1 6.3102 0.1771 -5.4550 16 6 6.3238 2.3183 -5.8733 17 7 6.7583 2.5089 -7.2648 18 6 7.4069 3.6109 -7.7548 19 1 7.6399 4.4364 -7.0985 20 6 7.7648 3.6670 -9.0947 21 7 7.4813 2.6608 -9.8944 22 14 8.6489 5.1707 -9.7631 23 1 8.8484 6.1548 -8.6690 24 1 9.9680 4.7661 -10.3121 25 1 7.8327 5.7870 -10.8398 26 6 6.3812 1.3163 -8.0453 27 6 5.1959 0.6920 -7.2675 28 1 4.2621 1.2041 -7.5000 29 8 5.0889 -0.7079 -7.5339 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6768 1.9562 -0.8901 37 1 6.4892 1.5738 1.4018 38 1 6.6295 1.3489 -1.2055 39 1 5.7725 1.1652 -3.2782 40 1 3.7899 1.8868 -5.1554 41 1 3.7983 0.1133 -5.0027 42 1 5.6287 3.1089 -5.5904 43 1 7.1889 2.3279 -5.2102 44 1 7.7311 2.7001 -10.8308 45 1 7.2144 0.6154 -8.0936 46 1 6.0671 1.6034 -9.0489 47 1 4.8268 -0.9168 -8.4409 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958334383.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:14 Heat of formation + Delta-G solvation = -30.492895 kcal Electronic energy + Delta-G solvation = -27087.313937 eV Core-core repulsion = 23270.908645 eV Total energy + Delta-G solvation = -3816.405292 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.41372 -39.09408 -37.98108 -35.27470 -34.99780 -34.37943 -32.26390 -31.21491 -30.10076 -29.49274 -27.52590 -26.30480 -25.41540 -23.73773 -22.19839 -21.63799 -20.78703 -20.44524 -19.88054 -19.06757 -17.85791 -16.96815 -16.79550 -15.89149 -15.54128 -15.22074 -15.11248 -14.92351 -14.49314 -14.20825 -13.88134 -13.79609 -13.47599 -13.31283 -12.99455 -12.95987 -12.79393 -12.66779 -12.32846 -11.97672 -11.87847 -11.49967 -11.46269 -11.38401 -11.21324 -10.91052 -10.81008 -10.77609 -10.56083 -10.01061 -9.92589 -9.73757 -9.55468 -9.10489 -9.02661 -8.72364 -8.69014 -8.29538 -6.88084 -5.69346 -3.11546 1.71764 2.30192 2.93878 3.38318 3.43871 3.46411 3.60071 3.69316 4.43774 4.52653 4.74486 4.77845 4.84982 4.92219 5.05603 5.16145 5.22496 5.27756 5.31989 5.43649 5.47513 5.58802 5.59284 5.68329 5.73014 5.73172 5.84432 5.97431 6.02075 6.10518 6.12486 6.16371 6.19517 6.30014 6.46366 6.59681 6.61831 6.74005 6.80967 6.89319 7.25139 7.38987 7.57484 7.76847 7.84330 8.19917 8.31920 8.55451 9.17219 9.78102 10.41685 11.34789 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.017691 B = 0.002660 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.325209 B =10525.356789 C =11397.444441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.058 4.058 4 C 0.105 3.895 5 N -0.554 5.554 6 H 0.414 0.586 7 C -0.019 4.019 8 C -0.167 4.167 9 C -0.229 4.229 10 C 0.588 3.412 11 O -0.553 6.553 12 N -0.721 5.721 13 C 0.136 3.864 14 C -0.104 4.104 15 H 0.085 0.915 16 C 0.142 3.858 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.080 0.920 20 C -0.012 4.012 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.280 1.280 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.129 3.871 27 C 0.081 3.919 28 H 0.060 0.940 29 O -0.569 6.569 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.400 0.600 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.030 0.970 43 H 0.025 0.975 44 H 0.252 0.748 45 H 0.022 0.978 46 H 0.109 0.891 47 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.451 -5.268 21.710 23.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.096 4.096 4 C -0.012 4.012 5 N -0.149 5.149 6 H 0.250 0.750 7 C -0.147 4.147 8 C -0.191 4.191 9 C -0.239 4.239 10 C 0.376 3.624 11 O -0.433 6.433 12 N -0.371 5.371 13 C 0.013 3.987 14 C -0.124 4.124 15 H 0.103 0.897 16 C 0.016 3.984 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.098 0.902 20 C -0.207 4.207 21 N -0.572 5.572 22 Si 0.747 3.253 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.003 3.997 27 C 0.020 3.980 28 H 0.078 0.922 29 O -0.374 6.374 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.234 0.766 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.040 0.960 46 H 0.126 0.874 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -9.026 -5.228 22.061 24.403 hybrid contribution 1.010 0.862 -0.371 1.379 sum -8.015 -4.366 21.690 23.532 Atomic orbital electron populations 1.21745 0.95451 1.01679 1.01856 1.21401 0.95892 0.95477 1.02237 1.20385 0.86664 0.98610 1.03906 1.20323 0.93381 1.01802 0.85732 1.41581 1.06263 1.58396 1.08646 0.74995 1.21702 0.85588 1.10794 0.96579 1.22096 0.95965 1.07228 0.93808 1.20195 0.93154 1.18154 0.92415 1.17327 0.85365 0.75749 0.83945 1.90725 1.16589 1.51722 1.84290 1.45809 1.09805 1.74817 1.06645 1.21375 0.96341 1.01924 0.79094 1.22396 0.96471 0.99019 0.94466 0.89658 1.21378 0.95754 0.92690 0.88611 1.44340 1.68081 1.17321 1.03159 1.19143 1.28867 0.93965 0.93001 0.90235 1.24802 1.01473 0.98238 0.96225 1.69776 1.52165 1.30441 1.04815 0.85973 0.78924 0.81708 0.78743 1.20480 1.21728 1.21702 1.22534 0.92197 0.87408 0.97552 1.23312 0.99310 0.80858 0.94472 0.92158 1.86373 1.92522 1.23981 1.34498 0.93135 0.92099 0.92723 0.90846 0.92891 0.91719 0.87720 0.81439 0.83639 0.76599 0.91421 0.91356 0.95258 0.95757 0.93713 0.96043 0.87381 0.77715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.07 5.92 -26.73 -0.16 -1.23 16 3 C -0.06 -0.57 5.07 -27.89 -0.14 -0.71 16 4 C 0.11 1.14 6.43 -81.88 -0.53 0.61 16 5 N -0.55 -4.32 5.90 -9.11 -0.05 -4.37 16 6 H 0.41 1.85 8.96 -40.82 -0.37 1.48 16 7 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16 8 C -0.17 -1.76 10.56 -37.50 -0.40 -2.16 16 9 C -0.23 -2.97 6.29 -103.35 -0.65 -3.62 16 10 C 0.59 9.08 7.81 -12.59 -0.10 8.98 16 11 O -0.55 -9.85 14.74 5.26 0.08 -9.77 16 12 N -0.72 -10.58 5.47 -61.43 -0.34 -10.91 16 13 C 0.14 2.22 5.02 -4.04 -0.02 2.20 16 14 C -0.10 -1.87 2.70 -88.79 -0.24 -2.11 16 15 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 16 C 0.14 2.93 6.75 -3.07 -0.02 2.90 16 17 N -0.60 -15.34 3.39 -170.08 -0.58 -15.92 16 18 C -0.22 -6.14 10.27 -15.06 -0.15 -6.30 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 21 N -0.92 -26.64 10.09 55.49 0.56 -26.08 16 22 Si 0.92 21.96 29.55 -169.99 -5.02 16.93 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 26 C 0.13 3.10 5.62 -2.53 -0.01 3.09 16 27 C 0.08 1.57 3.88 -24.59 -0.10 1.47 16 28 H 0.06 1.15 8.05 -51.93 -0.42 0.73 16 29 O -0.57 -10.06 13.47 -35.23 -0.47 -10.54 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.10 1.27 6.76 -51.93 -0.35 0.92 16 37 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.15 1.33 7.70 -52.49 -0.40 0.93 16 39 H 0.40 5.17 7.59 -40.82 -0.31 4.86 16 40 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 41 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.03 0.61 7.68 -51.93 -0.40 0.21 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.11 2.89 5.88 -51.92 -0.31 2.58 16 47 H 0.38 5.18 9.12 45.56 0.42 5.60 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -33.92 382.62 -9.24 -43.16 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -6.73 Total: 10.27 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -2.44 Total: 1.47 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.41 Total: -57.29 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: -0.40 Total: -20.31 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.92 -9.24 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958334383.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.665 kcal (2) G-P(sol) polarization free energy of solvation -33.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds