Wall clock time and date at job start Tue Mar 31 2020 13:44:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.47241 * 2 1 4 4 C 1.50692 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.34659 * 125.80493 * 265.14385 * 4 3 2 6 6 H 0.97006 * 124.85237 * 0.04706 * 5 4 3 7 7 C 1.36451 * 110.30171 * 180.32162 * 5 4 3 8 8 C 1.34485 * 108.85068 * 359.72773 * 7 5 4 9 9 C 1.36772 * 125.80154 * 85.00186 * 4 3 2 10 10 C 1.47264 * 126.94154 * 359.96192 * 9 4 3 11 11 O 1.21623 * 120.00124 * 359.97438 * 10 9 4 12 12 N 1.34776 * 119.99877 * 179.71620 * 10 9 4 13 13 C 1.46501 * 119.99648 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46720 * 179.97438 * 13 12 10 15 15 H 1.08993 * 110.89109 * 302.57299 * 14 13 12 16 16 C 1.54912 * 111.00173 * 66.45790 * 14 13 12 17 17 N 1.47426 * 104.83051 * 155.08224 * 16 14 13 18 18 C 1.36938 * 125.64545 * 155.83590 * 17 16 14 19 19 H 1.07997 * 120.00159 * 353.89161 * 18 17 16 20 20 C 1.38814 * 119.99519 * 173.88894 * 18 17 16 21 21 N 1.31619 * 120.00501 * 6.82642 * 20 18 17 22 22 Si 1.86805 * 119.99637 * 186.82801 * 20 18 17 23 23 H 1.48494 * 109.47366 * 94.98582 * 22 20 18 24 24 H 1.48503 * 109.47073 * 214.98523 * 22 20 18 25 25 H 1.48500 * 109.47180 * 334.98469 * 22 20 18 26 26 C 1.47020 * 108.70433 * 335.86625 * 17 16 14 27 27 C 1.54324 * 107.27017 * 1.06283 * 26 17 16 28 28 H 1.08995 * 110.72131 * 263.82487 * 27 26 17 29 29 O 1.42899 * 110.71769 * 140.55580 * 27 26 17 30 30 H 1.08998 * 109.47329 * 60.00151 * 1 2 3 31 31 H 1.08999 * 109.47624 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47403 * 300.00267 * 1 2 3 33 33 H 1.08995 * 109.47195 * 239.99568 * 2 1 3 34 34 H 1.09001 * 109.46895 * 119.99600 * 2 1 3 35 35 H 1.09003 * 109.47140 * 59.99572 * 3 2 1 36 36 H 1.08998 * 109.46836 * 300.00151 * 3 2 1 37 37 H 1.07993 * 125.57260 * 179.77151 * 7 5 4 38 38 H 1.08005 * 126.82817 * 179.97438 * 8 7 5 39 39 H 0.97003 * 119.99983 * 359.97438 * 12 10 9 40 40 H 1.08998 * 109.47348 * 299.99612 * 13 12 10 41 41 H 1.08999 * 109.47070 * 59.99803 * 13 12 10 42 42 H 1.09007 * 110.36616 * 273.92008 * 16 14 13 43 43 H 1.09000 * 110.36797 * 36.13267 * 16 14 13 44 44 H 0.96997 * 119.99796 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.88121 * 120.47983 * 26 17 16 46 46 H 1.09001 * 109.88524 * 241.48916 * 26 17 16 47 47 H 0.96693 * 114.00254 * 66.47561 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4424 0.0006 5 7 4.3342 1.5350 1.0891 6 1 4.0126 1.6120 2.0011 7 6 5.6492 1.5112 0.7257 8 6 5.7283 1.3960 -0.6119 9 6 4.3475 1.3456 -1.1041 10 6 3.9112 1.2221 -2.5052 11 8 2.7250 1.1975 -2.7728 12 7 4.8263 1.1415 -3.4913 13 6 4.3923 1.0181 -4.8851 14 6 5.6190 0.9464 -5.7968 15 1 6.2531 1.8230 -5.6647 16 6 6.4172 -0.3584 -5.5518 17 7 7.1384 -0.6022 -6.8143 18 6 8.2907 -1.3300 -6.9475 19 1 8.8002 -1.6998 -6.0700 20 6 8.8037 -1.5925 -8.2103 21 7 8.2616 -1.0318 -9.2706 22 14 10.2636 -2.7416 -8.4050 23 1 9.7781 -4.1124 -8.7052 24 1 11.1229 -2.2658 -9.5188 25 1 11.0505 -2.7599 -7.1458 26 6 6.4159 0.0660 -7.9066 27 6 5.1995 0.7809 -7.2814 28 1 4.3053 0.1631 -7.3629 29 8 4.9926 2.0555 -7.8934 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 6.4891 1.5738 1.4017 38 1 6.6294 1.3503 -1.2056 39 1 5.7724 1.1653 -3.2782 40 1 3.7988 0.1113 -5.0019 41 1 3.7889 1.8846 -5.1558 42 1 7.1227 -0.2233 -4.7319 43 1 5.7385 -1.1834 -5.3353 44 1 8.6204 -1.2150 -10.1529 45 1 7.0664 0.7951 -8.3897 46 1 6.0809 -0.6719 -8.6355 47 1 4.7288 2.0075 -8.8224 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958334384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:18 Heat of formation + Delta-G solvation = -31.780946 kcal Electronic energy + Delta-G solvation = -27121.083734 eV Core-core repulsion = 23304.622588 eV Total energy + Delta-G solvation = -3816.461146 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.40803 -39.09591 -37.99961 -35.27590 -34.99015 -34.36564 -32.23232 -31.21035 -30.09545 -29.49214 -27.54110 -26.30305 -25.41734 -23.73649 -22.20744 -21.63415 -20.78444 -20.36192 -19.97612 -19.10649 -17.85405 -16.90484 -16.74743 -15.91311 -15.57264 -15.23954 -15.10409 -14.84953 -14.47129 -14.19901 -14.03119 -13.83892 -13.40675 -13.30176 -13.02094 -12.93787 -12.77828 -12.60322 -12.37051 -11.96700 -11.91772 -11.47446 -11.42930 -11.37523 -11.18006 -10.91040 -10.80818 -10.78312 -10.53800 -10.02251 -9.91534 -9.77575 -9.60103 -9.16724 -9.02196 -8.72427 -8.61543 -8.29019 -6.86933 -5.75148 -3.08307 1.71931 2.31117 2.94377 3.39245 3.44357 3.46423 3.60139 3.68971 4.45989 4.53174 4.75417 4.79123 4.85897 4.92865 5.06012 5.16715 5.20237 5.28061 5.31799 5.44272 5.46794 5.56079 5.59504 5.68732 5.73983 5.74590 5.84720 5.93709 5.98155 6.09743 6.11806 6.17718 6.19112 6.29029 6.43552 6.55521 6.62140 6.72686 6.80891 6.90030 7.25730 7.43120 7.51597 7.76787 7.84395 8.21397 8.23804 8.55158 9.17573 9.78458 10.43719 11.36921 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.016131 B = 0.002729 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.382617 B =10256.383972 C =11062.054941 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.113 4.113 3 C -0.057 4.057 4 C 0.105 3.895 5 N -0.554 5.554 6 H 0.414 0.586 7 C -0.020 4.020 8 C -0.166 4.166 9 C -0.230 4.230 10 C 0.588 3.412 11 O -0.554 6.554 12 N -0.720 5.720 13 C 0.137 3.863 14 C -0.107 4.107 15 H 0.088 0.912 16 C 0.142 3.858 17 N -0.603 5.603 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.151 3.849 27 C 0.083 3.917 28 H 0.057 0.943 29 O -0.566 6.566 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.104 0.896 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.401 0.599 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.024 0.976 44 H 0.253 0.747 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.882 5.989 20.085 23.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C -0.095 4.095 4 C -0.013 4.013 5 N -0.149 5.149 6 H 0.250 0.750 7 C -0.147 4.147 8 C -0.190 4.190 9 C -0.240 4.240 10 C 0.377 3.623 11 O -0.434 6.434 12 N -0.371 5.371 13 C 0.013 3.987 14 C -0.127 4.127 15 H 0.107 0.893 16 C 0.016 3.984 17 N -0.330 5.330 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.026 3.974 27 C 0.023 3.977 28 H 0.075 0.925 29 O -0.371 6.371 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.122 0.878 37 H 0.186 0.814 38 H 0.164 0.836 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.066 0.934 47 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -11.411 6.114 20.413 24.172 hybrid contribution 1.259 -0.806 -0.229 1.513 sum -10.152 5.308 20.184 23.208 Atomic orbital electron populations 1.21741 0.95462 1.01706 1.01798 1.21406 0.95876 0.95463 1.02321 1.20379 0.86670 0.98630 1.03837 1.20317 0.93372 1.01827 0.85741 1.41585 1.06268 1.58400 1.08639 0.74999 1.21707 0.85576 1.10797 0.96583 1.22107 0.95981 1.07129 0.93831 1.20190 0.93157 1.18187 0.92416 1.17324 0.85346 0.75725 0.83950 1.90721 1.16598 1.51813 1.84284 1.45801 1.09877 1.74752 1.06620 1.21303 0.96347 1.01856 0.79197 1.22603 0.96132 1.00574 0.93409 0.89345 1.21595 0.93639 0.92527 0.90640 1.44312 1.26449 1.60648 1.01572 1.19074 0.98909 1.25169 0.92636 0.90253 1.24835 0.99722 1.00367 0.95440 1.69959 1.43161 1.45885 0.97789 0.86099 0.81650 0.80688 0.77340 1.21593 1.21760 1.20584 1.21831 0.89845 0.95394 0.90356 1.23119 0.98282 0.84228 0.92073 0.92536 1.86425 1.91861 1.29663 1.29172 0.92134 0.92699 0.93160 0.90799 0.92855 0.91754 0.87760 0.81429 0.83600 0.76503 0.91585 0.91386 0.94013 0.95839 0.93707 0.92851 0.93365 0.77802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.11 -1.09 5.92 -26.73 -0.16 -1.25 16 3 C -0.06 -0.55 5.07 -27.89 -0.14 -0.70 16 4 C 0.11 1.13 6.43 -81.89 -0.53 0.60 16 5 N -0.55 -4.32 5.90 -9.11 -0.05 -4.38 16 6 H 0.41 1.85 8.96 -40.82 -0.37 1.48 16 7 C -0.02 -0.16 11.89 -16.82 -0.20 -0.36 16 8 C -0.17 -1.77 10.56 -37.50 -0.40 -2.17 16 9 C -0.23 -2.96 6.29 -103.35 -0.65 -3.61 16 10 C 0.59 8.99 7.81 -12.59 -0.10 8.89 16 11 O -0.55 -9.72 14.75 5.26 0.08 -9.64 16 12 N -0.72 -10.48 5.40 -61.43 -0.33 -10.81 16 13 C 0.14 2.18 5.12 -4.04 -0.02 2.16 16 14 C -0.11 -1.92 2.83 -88.47 -0.25 -2.17 16 15 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 16 C 0.14 2.88 6.41 -2.53 -0.02 2.87 16 17 N -0.60 -15.29 3.39 -170.07 -0.58 -15.86 16 18 C -0.23 -6.37 10.26 -15.06 -0.15 -6.52 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -26.89 10.36 55.49 0.57 -26.31 16 22 Si 0.91 21.99 29.56 -169.99 -5.02 16.97 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.15 3.64 5.16 -3.07 -0.02 3.62 16 27 C 0.08 1.58 3.80 -24.90 -0.09 1.49 16 28 H 0.06 1.01 8.04 -51.93 -0.42 0.59 16 29 O -0.57 -10.08 13.39 -35.23 -0.47 -10.55 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.07 0.91 7.96 -51.93 -0.41 0.50 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.10 1.24 6.75 -51.93 -0.35 0.89 16 37 H 0.17 0.85 8.06 -52.49 -0.42 0.43 16 38 H 0.15 1.37 7.70 -52.48 -0.40 0.96 16 39 H 0.40 5.22 7.46 -40.82 -0.30 4.92 16 40 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 41 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.02 0.48 8.00 -51.93 -0.42 0.07 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 46 H 0.05 1.27 7.36 -51.93 -0.38 0.89 16 47 H 0.38 5.19 9.12 45.56 0.42 5.60 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -34.24 383.26 -9.28 -43.52 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.80 Total: 9.60 kcal Atomic # 6 Polarization: 4.13 SS G_CDS: -2.45 Total: 1.68 kcal Atomic # 7 Polarization: -56.97 SS G_CDS: -0.39 Total: -57.36 kcal Atomic # 8 Polarization: -19.79 SS G_CDS: -0.39 Total: -20.18 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.24 -9.28 -43.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958334384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.741 kcal (2) G-P(sol) polarization free energy of solvation -34.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds