Wall clock time and date at job start Tue Mar 31 2020 13:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47333 * 2 1 4 4 C 1.50700 * 109.47342 * 179.97438 * 3 2 1 5 5 N 1.34665 * 125.80128 * 264.97711 * 4 3 2 6 6 H 0.96997 * 124.85121 * 0.05347 * 5 4 3 7 7 C 1.36446 * 110.29422 * 180.02562 * 5 4 3 8 8 C 1.34485 * 108.86008 * 359.97438 * 7 5 4 9 9 C 1.36761 * 125.80257 * 85.30181 * 4 3 2 10 10 C 1.47269 * 126.94357 * 359.97106 * 9 4 3 11 11 O 1.21628 * 119.99414 * 0.17111 * 10 9 4 12 12 N 1.34773 * 120.00107 * 180.16793 * 10 9 4 13 13 C 1.46504 * 119.99854 * 179.97438 * 12 10 9 14 14 C 1.52994 * 109.47040 * 180.02562 * 13 12 10 15 15 H 1.09005 * 110.63970 * 56.69223 * 14 13 12 16 16 C 1.54322 * 110.72298 * 293.54595 * 14 13 12 17 17 N 1.47024 * 107.27029 * 219.44364 * 16 14 13 18 18 C 1.36935 * 125.64434 * 178.90594 * 17 16 14 19 19 H 1.08002 * 120.00352 * 359.97438 * 18 17 16 20 20 C 1.38812 * 119.99955 * 179.97438 * 18 17 16 21 21 N 1.31617 * 119.99952 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 120.00294 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47005 * 89.99968 * 22 20 18 24 24 H 1.48497 * 109.47419 * 210.00387 * 22 20 18 25 25 H 1.48503 * 109.46736 * 330.00594 * 22 20 18 26 26 C 1.47422 * 108.70455 * 358.94085 * 17 16 14 27 27 C 1.54901 * 104.83079 * 24.12833 * 26 17 16 28 28 H 1.09005 * 111.00317 * 204.91497 * 27 26 17 29 29 O 1.42896 * 111.00796 * 81.06644 * 27 26 17 30 30 H 1.09002 * 109.47263 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47406 * 299.99623 * 1 2 3 32 32 H 1.09000 * 109.47426 * 60.00193 * 1 2 3 33 33 H 1.08996 * 109.47007 * 239.99743 * 2 1 3 34 34 H 1.09007 * 109.46831 * 120.00083 * 2 1 3 35 35 H 1.09009 * 109.47060 * 60.00159 * 3 2 1 36 36 H 1.08997 * 109.47425 * 300.00364 * 3 2 1 37 37 H 1.08003 * 125.56724 * 179.97438 * 7 5 4 38 38 H 1.08002 * 126.83113 * 179.97438 * 8 7 5 39 39 H 0.96998 * 120.00270 * 0.02562 * 12 10 9 40 40 H 1.09004 * 109.46774 * 300.00266 * 13 12 10 41 41 H 1.09000 * 109.46834 * 60.00332 * 13 12 10 42 42 H 1.09002 * 109.88033 * 338.86149 * 16 14 13 43 43 H 1.09000 * 109.88218 * 100.02561 * 16 14 13 44 44 H 0.97006 * 120.00044 * 179.97438 * 21 20 18 45 45 H 1.09000 * 110.36579 * 142.96720 * 26 17 16 46 46 H 1.08998 * 110.36478 * 265.18021 * 26 17 16 47 47 H 0.96704 * 114.00447 * 67.80180 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 7 4.3343 1.5382 1.0890 6 1 4.0126 1.6177 2.0006 7 6 5.6492 1.5068 0.7261 8 6 5.7285 1.3889 -0.6113 9 6 4.3475 1.3514 -1.1045 10 6 3.9113 1.2354 -2.5063 11 8 2.7251 1.2160 -2.7743 12 7 4.8265 1.1509 -3.4920 13 6 4.3925 1.0349 -4.8865 14 6 5.6191 0.9553 -5.7974 15 1 6.2598 0.1226 -5.5073 16 6 6.4048 2.2833 -5.7725 17 7 6.8598 2.5471 -7.1454 18 6 7.5750 3.6415 -7.5527 19 1 7.8509 4.4029 -6.8381 20 6 7.9455 3.7724 -8.8840 21 7 7.6089 2.8449 -9.7550 22 14 8.9205 5.2657 -9.4398 23 1 10.3731 4.9804 -9.3217 24 1 8.5900 5.5744 -10.8543 25 1 8.5736 6.4295 -8.5851 26 6 6.4178 1.4387 -8.0112 27 6 5.1919 0.8323 -7.2840 28 1 5.0483 -0.2113 -7.5641 29 8 4.0127 1.5967 -7.5430 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8901 36 1 1.6767 1.9563 -0.8899 37 1 6.4892 1.5668 1.4024 38 1 6.6295 1.3373 -1.2044 39 1 5.7725 1.1661 -3.2782 40 1 3.7921 0.1330 -5.0063 41 1 3.7960 1.9068 -5.1550 42 1 5.7560 3.0916 -5.4352 43 1 7.2642 2.1931 -5.1081 44 1 7.8675 2.9365 -10.6855 45 1 6.1287 1.8157 -8.9922 46 1 7.2089 0.6953 -8.1092 47 1 3.7074 1.5507 -8.4594 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958334385.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:22 Heat of formation + Delta-G solvation = -27.663093 kcal Electronic energy + Delta-G solvation = -27256.549358 eV Core-core repulsion = 23440.266776 eV Total energy + Delta-G solvation = -3816.282582 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38865 -39.06337 -37.98519 -35.21973 -34.65559 -34.30707 -32.16517 -31.17883 -30.08077 -29.45163 -27.66529 -26.27651 -25.36613 -23.74796 -22.18750 -21.62061 -20.76770 -20.37274 -19.68559 -19.00362 -17.83561 -17.23383 -16.48648 -15.75026 -15.43355 -15.09966 -15.08805 -14.78921 -14.45522 -14.18744 -13.98630 -13.74651 -13.53710 -13.35345 -13.06928 -12.88999 -12.77113 -12.59279 -12.22308 -11.95106 -11.84254 -11.45271 -11.37105 -11.28094 -11.19300 -10.79528 -10.76701 -10.57314 -10.29675 -10.09761 -9.95424 -9.78571 -9.52178 -9.03883 -8.99499 -8.66740 -8.63345 -8.26642 -6.79497 -5.64998 -3.04564 1.74901 2.32468 2.96453 3.41307 3.46426 3.48527 3.66089 3.74176 4.50376 4.54789 4.77232 4.82135 4.86828 4.93591 5.14210 5.17920 5.28191 5.29738 5.40620 5.45158 5.50804 5.57722 5.60174 5.69686 5.70373 5.75115 5.86716 5.99108 6.00212 6.14563 6.17220 6.18837 6.22991 6.46619 6.52947 6.63830 6.66984 6.78889 6.86890 6.95302 7.27359 7.33634 7.62094 7.79742 7.89670 8.29094 8.42921 8.61208 9.22955 9.84461 10.48950 11.39949 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.018955 B = 0.002714 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.851109 B =10314.898958 C =11254.750172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.058 4.058 4 C 0.105 3.895 5 N -0.554 5.554 6 H 0.414 0.586 7 C -0.020 4.020 8 C -0.167 4.167 9 C -0.229 4.229 10 C 0.587 3.413 11 O -0.553 6.553 12 N -0.723 5.723 13 C 0.143 3.857 14 C -0.106 4.106 15 H 0.084 0.916 16 C 0.145 3.855 17 N -0.598 5.598 18 C -0.216 4.216 19 H 0.077 0.923 20 C -0.014 4.014 21 N -0.926 5.926 22 Si 0.915 3.085 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.126 3.874 27 C 0.082 3.918 28 H 0.054 0.946 29 O -0.557 6.557 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.105 0.895 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.398 0.602 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.029 0.971 43 H 0.019 0.981 44 H 0.251 0.749 45 H 0.111 0.889 46 H 0.019 0.981 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 -7.214 21.135 23.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.096 4.096 4 C -0.013 4.013 5 N -0.149 5.149 6 H 0.250 0.750 7 C -0.147 4.147 8 C -0.191 4.191 9 C -0.239 4.239 10 C 0.375 3.625 11 O -0.432 6.432 12 N -0.373 5.373 13 C 0.020 3.980 14 C -0.125 4.125 15 H 0.102 0.898 16 C 0.019 3.981 17 N -0.324 5.324 18 C -0.344 4.344 19 H 0.095 0.905 20 C -0.208 4.208 21 N -0.576 5.576 22 Si 0.746 3.254 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.001 3.999 27 C 0.022 3.978 28 H 0.071 0.929 29 O -0.362 6.362 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.232 0.768 40 H 0.079 0.921 41 H 0.097 0.903 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.062 0.938 45 H 0.129 0.871 46 H 0.036 0.964 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -8.962 -6.971 21.494 24.308 hybrid contribution 1.226 0.632 -0.333 1.419 sum -7.736 -6.339 21.161 23.405 Atomic orbital electron populations 1.21745 0.95458 1.01653 1.01887 1.21396 0.95884 0.95499 1.02179 1.20389 0.86685 0.98586 1.03946 1.20316 0.93377 1.01875 0.85729 1.41580 1.06258 1.58402 1.08678 0.75018 1.21697 0.85585 1.10812 0.96604 1.22094 0.95975 1.07272 0.93784 1.20222 0.93126 1.18064 0.92446 1.17321 0.85405 0.75840 0.83927 1.90728 1.16581 1.51660 1.84276 1.45880 1.09694 1.74820 1.06907 1.21173 0.96148 1.02482 0.78221 1.22499 0.96105 0.99617 0.94317 0.89751 1.21305 0.94761 0.93271 0.88750 1.44351 1.63546 1.22269 1.02204 1.19093 1.25207 0.97124 0.93015 0.90503 1.24758 1.01491 0.98663 0.95936 1.69752 1.51252 1.34044 1.02525 0.86056 0.79555 0.82008 0.77808 1.21712 1.21681 1.20711 1.22576 0.90904 0.89206 0.97215 1.23185 0.87397 0.92951 0.94301 0.92859 1.86403 1.43617 1.73381 1.32780 0.92748 0.93132 0.92072 0.90895 0.92911 0.91739 0.87661 0.81465 0.83662 0.76773 0.92053 0.90281 0.95317 0.96361 0.93803 0.87133 0.96365 0.77931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 37.16 0.37 -0.90 16 2 C -0.11 -1.08 5.92 -26.74 -0.16 -1.24 16 3 C -0.06 -0.59 5.08 -27.89 -0.14 -0.73 16 4 C 0.10 1.16 6.43 -81.88 -0.53 0.63 16 5 N -0.55 -4.44 5.90 -9.11 -0.05 -4.49 16 6 H 0.41 1.92 8.96 -40.82 -0.37 1.56 16 7 C -0.02 -0.17 11.89 -16.83 -0.20 -0.37 16 8 C -0.17 -1.80 10.56 -37.50 -0.40 -2.20 16 9 C -0.23 -3.02 6.29 -103.35 -0.65 -3.67 16 10 C 0.59 9.30 7.81 -12.59 -0.10 9.20 16 11 O -0.55 -10.13 14.80 5.25 0.08 -10.05 16 12 N -0.72 -10.86 5.40 -61.43 -0.33 -11.19 16 13 C 0.14 2.41 4.59 -4.04 -0.02 2.39 16 14 C -0.11 -1.88 2.95 -88.79 -0.26 -2.14 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.15 3.08 6.52 -3.06 -0.02 3.06 16 17 N -0.60 -15.44 3.39 -170.08 -0.58 -16.02 16 18 C -0.22 -6.10 10.27 -15.06 -0.15 -6.25 16 19 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 21 N -0.93 -26.87 10.09 55.49 0.56 -26.31 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.25 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 C 0.13 3.01 5.62 -2.53 -0.01 3.00 16 27 C 0.08 1.56 4.17 -24.59 -0.10 1.46 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 O -0.56 -10.62 12.22 -35.23 -0.43 -11.05 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.89 8.01 -51.93 -0.42 0.47 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.11 1.32 6.73 -51.93 -0.35 0.97 16 37 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 38 H 0.15 1.36 7.70 -52.49 -0.40 0.96 16 39 H 0.40 5.25 7.45 -40.82 -0.30 4.94 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 1.55 7.44 -51.93 -0.39 1.17 16 42 H 0.03 0.65 7.77 -51.93 -0.40 0.25 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.11 2.95 5.87 -51.93 -0.31 2.64 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.37 5.83 9.12 45.56 0.42 6.25 16 LS Contribution 380.83 15.07 5.74 5.74 Total: -1.00 -34.56 380.83 -9.22 -43.78 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -6.71 Total: 10.56 kcal Atomic # 6 Polarization: 4.25 SS G_CDS: -2.47 Total: 1.78 kcal Atomic # 7 Polarization: -57.61 SS G_CDS: -0.40 Total: -58.01 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.35 Total: -21.10 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.56 -9.22 -43.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958334385.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.118 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds