Wall clock time and date at job start Tue Mar 31 2020 13:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47066 * 2 1 4 4 C 1.50701 * 109.47145 * 119.99324 * 2 1 3 5 5 N 1.34661 * 125.80416 * 300.17106 * 4 2 1 6 6 H 0.96999 * 124.85248 * 0.02562 * 5 4 2 7 7 C 1.36447 * 110.29461 * 180.29906 * 5 4 2 8 8 C 1.34484 * 108.86121 * 359.72840 * 7 5 4 9 9 C 1.36772 * 125.79872 * 120.00099 * 4 2 1 10 10 C 1.47266 * 126.94236 * 359.97438 * 9 4 2 11 11 O 1.21628 * 119.99601 * 359.70986 * 10 9 4 12 12 N 1.34774 * 120.00065 * 179.70677 * 10 9 4 13 13 C 1.46504 * 119.99981 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47036 * 180.02562 * 13 12 10 15 15 H 1.09000 * 110.64630 * 51.85295 * 14 13 12 16 16 C 1.54327 * 110.71739 * 288.52195 * 14 13 12 17 17 N 1.47014 * 107.27187 * 219.44553 * 16 14 13 18 18 C 1.36941 * 125.65028 * 178.98893 * 17 16 14 19 19 H 1.08001 * 119.99881 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00004 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46867 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47240 * 119.99641 * 22 20 18 25 25 H 1.48505 * 109.47038 * 240.00124 * 22 20 18 26 26 C 1.47419 * 108.70437 * 358.94082 * 17 16 14 27 27 C 1.54912 * 104.83306 * 24.12578 * 26 17 16 28 28 H 1.08995 * 111.03828 * 204.90274 * 27 26 17 29 29 O 1.42903 * 110.99758 * 81.06681 * 27 26 17 30 30 H 1.09005 * 109.47423 * 300.00318 * 1 2 3 31 31 H 1.09006 * 109.47313 * 60.00416 * 1 2 3 32 32 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47485 * 240.00254 * 2 1 3 34 34 H 1.09006 * 109.46715 * 299.99950 * 3 2 1 35 35 H 1.08995 * 109.47235 * 59.99570 * 3 2 1 36 36 H 1.09002 * 109.47243 * 179.97438 * 3 2 1 37 37 H 1.08004 * 125.56939 * 179.70620 * 7 5 4 38 38 H 1.07999 * 126.83898 * 180.02562 * 8 7 5 39 39 H 0.97000 * 119.99775 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.46660 * 60.00162 * 13 12 10 41 41 H 1.08998 * 109.47245 * 300.00289 * 13 12 10 42 42 H 1.08999 * 109.88583 * 338.86569 * 16 14 13 43 43 H 1.09001 * 109.88372 * 100.02571 * 16 14 13 44 44 H 0.96996 * 119.99935 * 179.97438 * 21 20 18 45 45 H 1.09009 * 110.36844 * 265.29198 * 26 17 16 46 46 H 1.09002 * 110.37005 * 142.96697 * 26 17 16 47 47 H 0.96700 * 114.00311 * 67.80834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7774 -0.3553 2.5043 6 1 1.2363 0.4046 2.7703 7 6 2.3940 -1.2137 3.3672 8 6 3.0550 -2.1445 2.6564 9 6 2.8219 -1.8269 1.2434 10 6 3.3388 -2.5590 0.0748 11 8 3.0650 -2.1820 -1.0487 12 7 4.1153 -3.6465 0.2503 13 6 4.6290 -4.3751 -0.9123 14 6 5.4749 -5.5590 -0.4392 15 1 4.9229 -6.1619 0.2818 16 6 6.8104 -5.0707 0.1604 17 7 7.8541 -6.0095 -0.2763 18 6 9.1866 -5.9186 0.0262 19 1 9.5478 -5.1031 0.6352 20 6 10.0732 -6.8747 -0.4500 21 7 9.6330 -7.8690 -1.1918 22 14 11.8910 -6.7505 -0.0380 23 1 12.1266 -5.5505 0.8045 24 1 12.3149 -7.9657 0.7027 25 1 12.6763 -6.6366 -1.2933 26 6 7.2285 -7.0655 -1.0927 27 6 5.9306 -6.4241 -1.6438 28 1 5.1879 -7.1858 -1.8809 29 8 6.2065 -5.6090 -2.7847 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 2.3574 -1.1550 4.4451 38 1 3.6406 -2.9631 3.0480 39 1 4.3333 -3.9473 1.1463 40 1 5.2432 -3.7077 -1.5168 41 1 3.7941 -4.7412 -1.5097 42 1 7.0366 -4.0689 -0.2047 43 1 6.7483 -5.0655 1.2487 44 1 10.2526 -8.5369 -1.5248 45 1 6.9910 -7.9318 -0.4752 46 1 7.8877 -7.3520 -1.9123 47 1 6.4949 -6.1058 -3.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958334726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:41 Heat of formation + Delta-G solvation = -25.276222 kcal Electronic energy + Delta-G solvation = -27324.237602 eV Core-core repulsion = 23508.058522 eV Total energy + Delta-G solvation = -3816.179080 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47205 -39.08614 -38.00218 -35.47278 -34.67372 -34.33788 -32.16881 -31.18096 -29.48560 -28.66690 -27.63256 -27.41743 -25.51028 -23.92447 -22.42130 -21.81201 -20.52736 -20.35039 -19.77939 -19.02746 -17.66170 -17.22643 -16.47165 -15.75343 -15.44130 -15.12292 -14.81241 -14.73716 -14.46644 -14.35787 -13.98491 -13.73612 -13.55518 -13.29519 -13.12796 -12.92939 -12.66556 -12.61619 -12.47956 -12.23349 -11.85555 -11.42054 -11.35153 -11.29267 -11.19771 -11.04234 -10.78543 -10.57490 -10.30090 -10.06889 -9.93404 -9.79145 -9.47882 -9.03861 -9.00248 -8.68629 -8.63882 -8.28746 -6.79389 -5.65205 -3.04759 1.74435 2.32121 2.96372 3.41037 3.46724 3.49109 3.64873 3.72395 4.44197 4.50243 4.68197 4.81209 4.85584 4.92931 5.13249 5.22365 5.28653 5.29146 5.29214 5.40688 5.48893 5.52237 5.57115 5.58674 5.70138 5.70774 5.79769 5.92367 5.99708 5.99930 6.15136 6.18687 6.26059 6.45905 6.52738 6.62335 6.67003 6.81526 6.85492 6.94711 7.27249 7.33387 7.62502 7.79638 7.87249 8.28925 8.42818 8.58740 9.22890 9.84349 10.48735 11.39825 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002651 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.280699 B =10561.324195 C =11153.698373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.053 4.053 3 C -0.144 4.144 4 C 0.115 3.885 5 N -0.552 5.552 6 H 0.413 0.587 7 C -0.020 4.020 8 C -0.166 4.166 9 C -0.231 4.231 10 C 0.588 3.412 11 O -0.555 6.555 12 N -0.722 5.722 13 C 0.143 3.857 14 C -0.106 4.106 15 H 0.085 0.915 16 C 0.145 3.855 17 N -0.598 5.598 18 C -0.215 4.215 19 H 0.078 0.922 20 C -0.014 4.014 21 N -0.926 5.926 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.126 3.874 27 C 0.082 3.918 28 H 0.054 0.946 29 O -0.557 6.557 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.128 0.872 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.060 0.940 37 H 0.168 0.832 38 H 0.146 0.854 39 H 0.399 0.601 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.029 0.971 43 H 0.019 0.981 44 H 0.251 0.749 45 H 0.018 0.982 46 H 0.111 0.889 47 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.226 13.101 6.306 24.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 C -0.201 4.201 4 C -0.003 4.003 5 N -0.147 5.147 6 H 0.249 0.751 7 C -0.147 4.147 8 C -0.191 4.191 9 C -0.241 4.241 10 C 0.377 3.623 11 O -0.435 6.435 12 N -0.372 5.372 13 C 0.020 3.980 14 C -0.125 4.125 15 H 0.103 0.897 16 C 0.019 3.981 17 N -0.324 5.324 18 C -0.344 4.344 19 H 0.096 0.904 20 C -0.209 4.209 21 N -0.576 5.576 22 Si 0.746 3.254 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.001 3.999 27 C 0.021 3.979 28 H 0.071 0.929 29 O -0.362 6.362 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.083 0.917 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.185 0.815 38 H 0.163 0.837 39 H 0.233 0.767 40 H 0.096 0.904 41 H 0.081 0.919 42 H 0.047 0.953 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.036 0.964 46 H 0.129 0.871 47 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.432 13.811 5.967 24.575 hybrid contribution 1.046 -0.400 0.774 1.362 sum -18.385 13.410 6.742 23.734 Atomic orbital electron populations 1.21824 0.94416 1.02238 1.01561 1.20260 0.95575 0.95874 0.95498 1.21829 1.01851 0.94884 1.01548 1.20247 0.98792 0.95888 0.85416 1.41516 1.41860 1.25846 1.05443 0.75112 1.21690 1.02587 0.94672 0.95736 1.22074 1.04194 1.01331 0.91475 1.20203 1.09673 1.00994 0.93197 1.17327 0.77684 0.79664 0.87609 1.90671 1.60008 1.67755 1.25111 1.45892 1.51623 1.29243 1.10436 1.21187 0.96828 0.92928 0.87062 1.22498 0.96641 0.96112 0.97246 0.89709 1.21316 0.87066 0.94021 0.95672 1.44362 1.02803 1.26219 1.59013 1.19142 0.81585 1.07773 1.25852 0.90444 1.24761 0.98299 0.97312 1.00511 1.69763 1.32675 1.15127 1.39992 0.85985 0.84795 0.77187 0.77475 1.20544 1.21843 1.21765 1.22581 0.90740 0.89555 0.97008 1.23204 0.97886 0.91303 0.85484 0.92858 1.86406 1.89891 1.37529 1.22366 0.93530 0.91750 0.92190 0.85427 0.91731 0.93533 0.92074 0.81479 0.83662 0.76740 0.90381 0.91921 0.95324 0.96329 0.93855 0.96383 0.87115 0.77928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.17 37.15 0.34 -0.81 16 2 C -0.05 -0.55 3.24 -91.77 -0.30 -0.84 16 3 C -0.14 -1.22 9.18 37.16 0.34 -0.88 16 4 C 0.11 1.27 5.68 -81.88 -0.47 0.81 16 5 N -0.55 -4.45 5.90 -9.10 -0.05 -4.50 16 6 H 0.41 2.07 8.96 -40.82 -0.37 1.71 16 7 C -0.02 -0.16 11.89 -16.83 -0.20 -0.36 16 8 C -0.17 -1.77 10.56 -37.50 -0.40 -2.17 16 9 C -0.23 -3.05 6.29 -103.35 -0.65 -3.70 16 10 C 0.59 9.36 7.81 -12.59 -0.10 9.26 16 11 O -0.56 -10.30 14.47 5.25 0.08 -10.23 16 12 N -0.72 -10.77 5.47 -61.43 -0.34 -11.11 16 13 C 0.14 2.41 4.50 -4.04 -0.02 2.39 16 14 C -0.11 -1.86 2.89 -88.79 -0.26 -2.12 16 15 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 16 C 0.15 3.09 6.75 -3.07 -0.02 3.07 16 17 N -0.60 -15.44 3.39 -170.07 -0.58 -16.02 16 18 C -0.22 -6.07 10.27 -15.06 -0.15 -6.22 16 19 H 0.08 2.13 7.83 -52.49 -0.41 1.72 16 20 C -0.01 -0.40 5.49 -17.43 -0.10 -0.49 16 21 N -0.93 -26.85 10.09 55.49 0.56 -26.29 16 22 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 C 0.13 3.01 5.62 -2.53 -0.01 3.00 16 27 C 0.08 1.55 4.17 -24.59 -0.10 1.45 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 O -0.56 -10.62 12.33 -35.23 -0.43 -11.05 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.13 1.71 5.50 -51.93 -0.29 1.42 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.17 0.84 8.06 -52.48 -0.42 0.42 16 38 H 0.15 1.33 7.70 -52.49 -0.40 0.92 16 39 H 0.40 5.15 7.59 -40.82 -0.31 4.84 16 40 H 0.08 1.53 7.52 -51.93 -0.39 1.14 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.65 7.68 -51.93 -0.40 0.25 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.71 16 45 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 46 H 0.11 2.95 5.88 -51.93 -0.31 2.64 16 47 H 0.37 5.83 9.12 45.56 0.42 6.25 16 LS Contribution 379.75 15.07 5.72 5.72 Total: -1.00 -34.54 379.75 -8.82 -43.36 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -6.66 Total: 10.49 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.09 Total: 2.37 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: -0.41 Total: -57.92 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.36 Total: -21.28 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.54 -8.82 -43.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958334726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.083 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds