Wall clock time and date at job start Tue Mar 31 2020 13:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.47066 * 2 1 4 4 C 1.50701 * 109.47145 * 119.99324 * 2 1 3 5 5 N 1.34661 * 125.80416 * 300.17106 * 4 2 1 6 6 H 0.96999 * 124.85248 * 0.02562 * 5 4 2 7 7 C 1.36447 * 110.29461 * 180.29906 * 5 4 2 8 8 C 1.34484 * 108.86121 * 359.72840 * 7 5 4 9 9 C 1.36772 * 125.79872 * 120.00099 * 4 2 1 10 10 C 1.47266 * 126.94236 * 359.97438 * 9 4 2 11 11 O 1.21628 * 119.99601 * 359.70986 * 10 9 4 12 12 N 1.34774 * 120.00065 * 179.70677 * 10 9 4 13 13 C 1.46504 * 119.99981 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47036 * 180.02562 * 13 12 10 15 15 H 1.09000 * 110.64630 * 51.85295 * 14 13 12 16 16 C 1.54327 * 110.71739 * 288.52195 * 14 13 12 17 17 N 1.47014 * 107.27187 * 219.44553 * 16 14 13 18 18 C 1.36941 * 125.65028 * 178.98893 * 17 16 14 19 19 H 1.08001 * 119.99881 * 359.97438 * 18 17 16 20 20 C 1.38810 * 120.00004 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00364 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00071 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46867 * 0.02562 * 22 20 18 24 24 H 1.48498 * 109.47240 * 119.99641 * 22 20 18 25 25 H 1.48505 * 109.47038 * 240.00124 * 22 20 18 26 26 C 1.47419 * 108.70437 * 358.94082 * 17 16 14 27 27 C 1.54912 * 104.83306 * 24.12578 * 26 17 16 28 28 H 1.08995 * 111.03828 * 204.90274 * 27 26 17 29 29 O 1.42903 * 110.99758 * 81.06681 * 27 26 17 30 30 H 1.09005 * 109.47423 * 300.00318 * 1 2 3 31 31 H 1.09006 * 109.47313 * 60.00416 * 1 2 3 32 32 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 33 33 H 1.08995 * 109.47485 * 240.00254 * 2 1 3 34 34 H 1.09006 * 109.46715 * 299.99950 * 3 2 1 35 35 H 1.08995 * 109.47235 * 59.99570 * 3 2 1 36 36 H 1.09002 * 109.47243 * 179.97438 * 3 2 1 37 37 H 1.08004 * 125.56939 * 179.70620 * 7 5 4 38 38 H 1.07999 * 126.83898 * 180.02562 * 8 7 5 39 39 H 0.97000 * 119.99775 * 0.02562 * 12 10 9 40 40 H 1.08996 * 109.46660 * 60.00162 * 13 12 10 41 41 H 1.08998 * 109.47245 * 300.00289 * 13 12 10 42 42 H 1.08999 * 109.88583 * 338.86569 * 16 14 13 43 43 H 1.09001 * 109.88372 * 100.02571 * 16 14 13 44 44 H 0.96996 * 119.99935 * 179.97438 * 21 20 18 45 45 H 1.09009 * 110.36844 * 265.29198 * 26 17 16 46 46 H 1.09002 * 110.37005 * 142.96697 * 26 17 16 47 47 H 0.96700 * 114.00311 * 67.80834 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7774 -0.3553 2.5043 6 1 1.2363 0.4046 2.7703 7 6 2.3940 -1.2137 3.3672 8 6 3.0550 -2.1445 2.6564 9 6 2.8219 -1.8269 1.2434 10 6 3.3388 -2.5590 0.0748 11 8 3.0650 -2.1820 -1.0487 12 7 4.1153 -3.6465 0.2503 13 6 4.6290 -4.3751 -0.9123 14 6 5.4749 -5.5590 -0.4392 15 1 4.9229 -6.1619 0.2818 16 6 6.8104 -5.0707 0.1604 17 7 7.8541 -6.0095 -0.2763 18 6 9.1866 -5.9186 0.0262 19 1 9.5478 -5.1031 0.6352 20 6 10.0732 -6.8747 -0.4500 21 7 9.6330 -7.8690 -1.1918 22 14 11.8910 -6.7505 -0.0380 23 1 12.1266 -5.5505 0.8045 24 1 12.3149 -7.9657 0.7027 25 1 12.6763 -6.6366 -1.2933 26 6 7.2285 -7.0655 -1.0927 27 6 5.9306 -6.4241 -1.6438 28 1 5.1879 -7.1858 -1.8809 29 8 6.2065 -5.6090 -2.7847 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4426 0.0005 37 1 2.3574 -1.1550 4.4451 38 1 3.6406 -2.9631 3.0480 39 1 4.3333 -3.9473 1.1463 40 1 5.2432 -3.7077 -1.5168 41 1 3.7941 -4.7412 -1.5097 42 1 7.0366 -4.0689 -0.2047 43 1 6.7483 -5.0655 1.2487 44 1 10.2526 -8.5369 -1.5248 45 1 6.9910 -7.9318 -0.4752 46 1 7.8877 -7.3520 -1.9123 47 1 6.4949 -6.1058 -3.5626 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958334726.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:40 Heat of formation + Delta-G solvation = -51.300310 kcal Electronic energy + Delta-G solvation = -27325.366091 eV Core-core repulsion = 23508.058522 eV Total energy + Delta-G solvation = -3817.307569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 321.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.26357 -40.44197 -39.50538 -36.36111 -36.27930 -35.74232 -33.94269 -32.24613 -31.07255 -29.54049 -29.26676 -28.06431 -27.26614 -25.51410 -23.56124 -22.65157 -22.13939 -21.34798 -21.15534 -20.28153 -19.11026 -18.42533 -18.08349 -16.95035 -16.75202 -16.68762 -16.32299 -15.84276 -15.58175 -15.48692 -15.22113 -15.07280 -14.80602 -14.40543 -14.32349 -14.01643 -13.88122 -13.76471 -13.63818 -13.41689 -13.17093 -13.06822 -13.01039 -12.65185 -12.29565 -12.13280 -12.09831 -12.01937 -11.86019 -11.82926 -11.79994 -11.54557 -10.81385 -10.71079 -10.63333 -10.09170 -9.67628 -9.09149 -8.84828 -7.78113 -5.20388 0.78952 1.46329 1.47367 1.57514 1.59126 2.16157 2.49297 2.58457 2.62923 3.29373 3.37636 3.63065 3.71607 3.91390 3.96841 3.99770 4.00785 4.12726 4.21916 4.35180 4.46577 4.51594 4.57314 4.62128 4.67586 4.70644 4.83429 4.86676 4.89632 4.95426 5.00608 5.03283 5.12446 5.19348 5.33050 5.33439 5.40599 5.42383 5.50900 5.59095 5.78442 5.83090 6.03798 6.29655 6.64475 6.75718 6.98348 7.12109 7.40334 7.78531 8.41751 9.24351 Molecular weight = 321.18amu Principal moments of inertia in cm(-1) A = 0.020135 B = 0.002651 C = 0.002510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.280699 B =10561.324195 C =11153.698373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.056 4.056 3 C -0.139 4.139 4 C 0.114 3.886 5 N -0.535 5.535 6 H 0.430 0.570 7 C 0.000 4.000 8 C -0.189 4.189 9 C -0.270 4.270 10 C 0.581 3.419 11 O -0.592 6.592 12 N -0.716 5.716 13 C 0.160 3.840 14 C -0.090 4.090 15 H 0.113 0.887 16 C 0.144 3.856 17 N -0.621 5.621 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.066 4.066 21 N -0.948 5.948 22 Si 0.979 3.021 23 H -0.270 1.270 24 H -0.290 1.290 25 H -0.292 1.292 26 C 0.128 3.872 27 C 0.093 3.907 28 H 0.090 0.910 29 O -0.570 6.570 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.041 0.959 37 H 0.208 0.792 38 H 0.155 0.845 39 H 0.409 0.591 40 H 0.046 0.954 41 H 0.066 0.934 42 H 0.010 0.990 43 H 0.031 0.969 44 H 0.247 0.753 45 H 0.003 0.997 46 H 0.080 0.920 47 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.865 14.397 8.479 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.075 4.075 3 C -0.196 4.196 4 C -0.006 4.006 5 N -0.131 5.131 6 H 0.270 0.730 7 C -0.127 4.127 8 C -0.213 4.213 9 C -0.280 4.280 10 C 0.372 3.628 11 O -0.475 6.475 12 N -0.366 5.366 13 C 0.036 3.964 14 C -0.109 4.109 15 H 0.131 0.869 16 C 0.019 3.981 17 N -0.346 5.346 18 C -0.364 4.364 19 H 0.094 0.906 20 C -0.259 4.259 21 N -0.598 5.598 22 Si 0.807 3.193 23 H -0.194 1.194 24 H -0.217 1.217 25 H -0.219 1.219 26 C 0.003 3.997 27 C 0.032 3.968 28 H 0.107 0.893 29 O -0.377 6.377 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.225 0.775 38 H 0.173 0.827 39 H 0.245 0.755 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.029 0.971 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.020 0.980 46 H 0.098 0.902 47 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges -21.095 15.127 8.174 27.215 hybrid contribution 1.538 -0.751 0.114 1.716 sum -19.557 14.375 8.288 25.648 Atomic orbital electron populations 1.21781 0.92570 1.01842 1.03237 1.20188 0.97069 0.96378 0.93857 1.21796 1.00577 0.93980 1.03268 1.20311 0.98164 0.95350 0.86773 1.41506 1.41274 1.26108 1.04258 0.72988 1.22275 1.00244 0.92959 0.97240 1.22287 1.05703 1.02892 0.90376 1.20203 1.11867 1.02462 0.93454 1.17844 0.77225 0.79576 0.88142 1.90651 1.61396 1.68697 1.26762 1.45770 1.51400 1.29106 1.10363 1.20831 0.96168 0.91990 0.87422 1.22436 0.95027 0.96400 0.97043 0.86865 1.21411 0.87855 0.92412 0.96420 1.44666 1.03031 1.27368 1.59583 1.19454 0.83235 1.07822 1.25927 0.90637 1.25570 1.02282 0.97242 1.00758 1.69999 1.33622 1.15521 1.40662 0.84998 0.79806 0.77363 0.77095 1.19437 1.21655 1.21902 1.22443 0.92425 0.89276 0.95600 1.23120 0.96007 0.91962 0.85698 0.89268 1.86393 1.89920 1.38370 1.23005 0.91046 0.90886 0.93593 0.89156 0.90832 0.91003 0.94013 0.77534 0.82744 0.75484 0.93582 0.91538 0.97148 0.95059 0.94299 0.97961 0.90219 0.76338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.17 71.98 0.66 -1.34 16 2 C -0.06 -1.12 3.24 -11.54 -0.04 -1.16 16 3 C -0.14 -2.18 9.18 71.98 0.66 -1.52 16 4 C 0.11 2.40 5.68 41.78 0.24 2.63 16 5 N -0.54 -6.99 5.90 -182.72 -1.08 -8.07 16 6 H 0.43 2.57 8.96 -92.71 -0.83 1.74 16 7 C 0.00 0.00 11.89 83.12 0.99 0.99 16 8 C -0.19 -3.67 10.56 23.62 0.25 -3.42 16 9 C -0.27 -7.03 6.29 -19.04 -0.12 -7.15 16 10 C 0.58 18.95 7.81 86.62 0.68 19.63 16 11 O -0.59 -23.06 14.47 -4.12 -0.06 -23.12 16 12 N -0.72 -21.39 5.47 -466.52 -2.55 -23.94 16 13 C 0.16 5.39 4.50 86.38 0.39 5.78 16 14 C -0.09 -3.09 2.89 -9.61 -0.03 -3.12 16 15 H 0.11 3.30 8.14 -2.39 -0.02 3.28 16 16 C 0.14 6.16 6.75 86.73 0.59 6.74 16 17 N -0.62 -32.54 3.39 -691.99 -2.35 -34.89 16 18 C -0.24 -13.50 10.27 84.03 0.86 -12.64 16 19 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 20 C -0.07 -3.79 5.49 84.86 0.47 -3.32 16 21 N -0.95 -56.14 10.09 21.65 0.22 -55.92 16 22 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 23 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.13 6.18 5.62 86.86 0.49 6.67 16 27 C 0.09 3.44 4.17 31.98 0.13 3.57 16 28 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 29 O -0.57 -21.72 12.33 -148.98 -1.84 -23.55 16 30 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 32 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.09 2.55 5.50 -2.39 -0.01 2.54 16 34 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.21 1.01 8.06 -2.91 -0.02 0.99 16 38 H 0.15 2.55 7.70 -2.91 -0.02 2.53 16 39 H 0.41 10.30 7.59 -92.71 -0.70 9.59 16 40 H 0.05 1.86 7.52 -2.39 -0.02 1.84 16 41 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.01 0.48 7.68 -2.39 -0.02 0.47 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 45 H 0.00 0.13 8.14 -2.38 -0.02 0.11 16 46 H 0.08 4.37 5.88 -2.39 -0.01 4.36 16 47 H 0.39 12.09 9.12 -74.06 -0.68 11.42 16 Total: -1.00 -78.11 379.75 -0.62 -78.73 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: -1.21 Total: 30.11 kcal Atomic # 6 Polarization: 6.13 SS G_CDS: 6.21 Total: 12.34 kcal Atomic # 7 Polarization: -117.07 SS G_CDS: -5.76 Total: -122.83 kcal Atomic # 8 Polarization: -44.77 SS G_CDS: -1.90 Total: -46.67 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -78.11 -0.62 -78.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958334726.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.430 kcal (2) G-P(sol) polarization free energy of solvation -78.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds